9-8389185-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389185
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389185
    reference: chr 9
allele count: 1
allele frequency: 8.967805577975069e-6
allele num: 111510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+47A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+47A>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48123
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

9-8389186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389186
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389186
    reference: chr 9
allele count: 1
allele frequency: 8.967805577975069e-6
allele num: 111510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+46G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+46G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

9-8389187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389187
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389187
    reference: chr 9
allele count: 64
allele frequency: 5.737646130674891e-4
allele num: 111544
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+45A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+45A>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

9-8389193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389193
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389193
    reference: chr 9
allele count: 1
allele frequency: 8.956881572111853e-6
allele num: 111646
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+39T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+39T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-8389196-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389196
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389197
    reference: chr 9
allele count: 1
allele frequency: 8.952872081363702e-6
allele num: 111696
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+35_4320+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+35_4386+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+35_4347+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+35_4386+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+35_3168+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+35_4386+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+35_3165+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+35_3156+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+35_3165+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+35_3156+36insG
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+35_3165+36insG
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

9-8389196-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389196
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389196
    reference: chr 9
allele count: 4
allele frequency: 3.581148832545481e-5
allele num: 111696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+36T>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+36T>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

9-8389198-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389198
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389198
    reference: chr 9
allele count: 1
allele frequency: 8.944383821398544e-6
allele num: 111802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+34A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+34A>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-8389206-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389206
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389206
    reference: chr 9
allele count: 83
allele frequency: 7.404103479036574e-4
allele num: 112100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+26C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+26C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

9-8389207-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389207
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389208
    reference: chr 9
allele count: 1
allele frequency: 8.915039671926539e-6
allele num: 112170
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+24dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+24dupT
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

9-8389208-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389208
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389208
    reference: chr 9
allele count: 1
allele frequency: 8.910432334176854e-6
allele num: 112228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+24T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+24T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-8389213-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389213
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389213
    reference: chr 9
allele count: 8
allele frequency: 7.106689171182375e-5
allele num: 112570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+19C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+19C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

9-8389215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389215
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389215
    reference: chr 9
allele count: 30
allele frequency: 2.662454072667247e-4
allele num: 112678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+17A>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+17A>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-8389216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389216
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389216
    reference: chr 9
allele count: 3
allele frequency: 2.658254767136882e-5
allele num: 112856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+16C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+16C>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-8389217-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389217
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389217
    reference: chr 9
allele count: 1
allele frequency: 8.853004709798506e-6
allele num: 112956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4386+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4386+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3165+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3156+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3165+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4347+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4320+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3168+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3165+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3156+15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4386+15C>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

9-8389259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389259
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389259
    reference: chr 9
allele count: 1
allele frequency: 8.371563473194253e-6
allele num: 119452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3138G>A
  hgvsp: ENSP00000380731.3:p.Met1046Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3129G>A
  hgvsp: ENSP00000380735.3:p.Met1043Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4359G>A
  hgvsp: ENSP00000348812.5:p.Met1453Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3138G>A
  hgvsp: ENSP00000417093.1:p.Met1046Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3129G>A
  hgvsp: ENSP00000440515.1:p.Met1043Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4320G>A
  hgvsp: ENSP00000353187.4:p.Met1440Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4293G>A
  hgvsp: ENSP00000351293.5:p.Met1431Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3141G>A
  hgvsp: ENSP00000347373.5:p.Met1047Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4359G>A
  hgvsp: ENSP00000370593.3:p.Met1453Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3138G>A
  hgvsp: ENSP00000380741.3:p.Met1046Ile
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4359G>A
  hgvsp: ENSP00000438164.1:p.Met1453Ile
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1453Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

9-8389265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389265
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389265
    reference: chr 9
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4287T>C
  hgvsp: ENST00000358503.5:c.4287T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3123T>C
  hgvsp: ENST00000537002.1:c.3123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3132T>C
  hgvsp: ENST00000397617.3:c.3132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3132T>C
  hgvsp: ENST00000486161.1:c.3132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4353T>C
  hgvsp: ENST00000381196.4:c.4353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4353T>C
  hgvsp: ENST00000356435.5:c.4353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3132T>C
  hgvsp: ENST00000397606.3:c.3132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3135T>C
  hgvsp: ENST00000355233.5:c.3135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4314T>C
  hgvsp: ENST00000360074.4:c.4314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4353T>C
  hgvsp: ENST00000540109.1:c.4353T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3123T>C
  hgvsp: ENST00000397611.3:c.3123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1451Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

9-8389266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389266
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389266
    reference: chr 9
allele count: 2
allele frequency: 1.663450662053363e-5
allele num: 120232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4352T>C
  hgvsp: ENSP00000348812.5:p.Val1451Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3131T>C
  hgvsp: ENSP00000380731.3:p.Val1044Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3134T>C
  hgvsp: ENSP00000347373.5:p.Val1045Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3131T>C
  hgvsp: ENSP00000417093.1:p.Val1044Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3122T>C
  hgvsp: ENSP00000440515.1:p.Val1041Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4352T>C
  hgvsp: ENSP00000370593.3:p.Val1451Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4286T>C
  hgvsp: ENSP00000351293.5:p.Val1429Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4313T>C
  hgvsp: ENSP00000353187.4:p.Val1438Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3122T>C
  hgvsp: ENSP00000380735.3:p.Val1041Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4352T>C
  hgvsp: ENSP00000438164.1:p.Val1451Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3131T>C
  hgvsp: ENSP00000380741.3:p.Val1044Ala
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1451Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

9-8389270-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389270
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389270
    reference: chr 9
allele count: 2
allele frequency: 1.660191918185742e-5
allele num: 120468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3118A>G
  hgvsp: ENSP00000380735.3:p.Thr1040Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3118A>G
  hgvsp: ENSP00000440515.1:p.Thr1040Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4309A>G
  hgvsp: ENSP00000353187.4:p.Thr1437Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4282A>G
  hgvsp: ENSP00000351293.5:p.Thr1428Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3127A>G
  hgvsp: ENSP00000380731.3:p.Thr1043Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3130A>G
  hgvsp: ENSP00000347373.5:p.Thr1044Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3127A>G
  hgvsp: ENSP00000417093.1:p.Thr1043Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4348A>G
  hgvsp: ENSP00000370593.3:p.Thr1450Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4348A>G
  hgvsp: ENSP00000438164.1:p.Thr1450Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4348A>G
  hgvsp: ENSP00000348812.5:p.Thr1450Ala
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3127A>G
  hgvsp: ENSP00000380741.3:p.Thr1043Ala
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1450Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

9-8389275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389275
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389275
    reference: chr 9
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4343G>A
  hgvsp: ENSP00000370593.3:p.Ser1448Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3122G>A
  hgvsp: ENSP00000417093.1:p.Ser1041Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3122G>A
  hgvsp: ENSP00000380741.3:p.Ser1041Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3125G>A
  hgvsp: ENSP00000347373.5:p.Ser1042Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3113G>A
  hgvsp: ENSP00000380735.3:p.Ser1038Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3122G>A
  hgvsp: ENSP00000380731.3:p.Ser1041Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4304G>A
  hgvsp: ENSP00000353187.4:p.Ser1435Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4277G>A
  hgvsp: ENSP00000351293.5:p.Ser1426Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3113G>A
  hgvsp: ENSP00000440515.1:p.Ser1038Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4343G>A
  hgvsp: ENSP00000348812.5:p.Ser1448Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4343G>A
  hgvsp: ENSP00000438164.1:p.Ser1448Asn
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1448Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

9-8389278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389278
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389278
    reference: chr 9
allele count: 3
allele frequency: 2.48216974731512e-5
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4301G>A
  hgvsp: ENSP00000353187.4:p.Arg1434Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3119G>A
  hgvsp: ENSP00000380741.3:p.Arg1040Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4340G>A
  hgvsp: ENSP00000438164.1:p.Arg1447Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3119G>A
  hgvsp: ENSP00000417093.1:p.Arg1040Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3122G>A
  hgvsp: ENSP00000347373.5:p.Arg1041Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4340G>A
  hgvsp: ENSP00000348812.5:p.Arg1447Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3119G>A
  hgvsp: ENSP00000380731.3:p.Arg1040Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3110G>A
  hgvsp: ENSP00000440515.1:p.Arg1037Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4274G>A
  hgvsp: ENSP00000351293.5:p.Arg1425Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4340G>A
  hgvsp: ENSP00000370593.3:p.Arg1447Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3110G>A
  hgvsp: ENSP00000380735.3:p.Arg1037Gln
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1447Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

9-8389279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389279
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389279
    reference: chr 9
allele count: 1
allele frequency: 8.268289456277286e-6
allele num: 120944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3118C>T
  hgvsp: ENSP00000417093.1:p.Arg1040Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3109C>T
  hgvsp: ENSP00000440515.1:p.Arg1037Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3109C>T
  hgvsp: ENSP00000380735.3:p.Arg1037Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4339C>T
  hgvsp: ENSP00000348812.5:p.Arg1447Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4273C>T
  hgvsp: ENSP00000351293.5:p.Arg1425Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4339C>T
  hgvsp: ENSP00000438164.1:p.Arg1447Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4300C>T
  hgvsp: ENSP00000353187.4:p.Arg1434Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3118C>T
  hgvsp: ENSP00000380741.3:p.Arg1040Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4339C>T
  hgvsp: ENSP00000370593.3:p.Arg1447Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3121C>T
  hgvsp: ENSP00000347373.5:p.Arg1041Trp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3118C>T
  hgvsp: ENSP00000380731.3:p.Arg1040Trp
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1447Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

9-8389295-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389295
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389295
    reference: chr 9
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3102A>C
  hgvsp: ENSP00000380731.3:p.Arg1034Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4257A>C
  hgvsp: ENSP00000351293.5:p.Arg1419Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4323A>C
  hgvsp: ENSP00000370593.3:p.Arg1441Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3105A>C
  hgvsp: ENSP00000347373.5:p.Arg1035Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3093A>C
  hgvsp: ENSP00000440515.1:p.Arg1031Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4284A>C
  hgvsp: ENSP00000353187.4:p.Arg1428Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4323A>C
  hgvsp: ENSP00000348812.5:p.Arg1441Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3102A>C
  hgvsp: ENSP00000417093.1:p.Arg1034Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3093A>C
  hgvsp: ENSP00000380735.3:p.Arg1031Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3102A>C
  hgvsp: ENSP00000380741.3:p.Arg1034Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4323A>C
  hgvsp: ENSP00000438164.1:p.Arg1441Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1441Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

9-8389311-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389311
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389311
    reference: chr 9
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3077T>A
  hgvsp: ENSP00000440515.1:p.Phe1026Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3077T>A
  hgvsp: ENSP00000380735.3:p.Phe1026Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4268T>A
  hgvsp: ENSP00000353187.4:p.Phe1423Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3086T>A
  hgvsp: ENSP00000380731.3:p.Phe1029Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4241T>A
  hgvsp: ENSP00000351293.5:p.Phe1414Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3086T>A
  hgvsp: ENSP00000417093.1:p.Phe1029Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3089T>A
  hgvsp: ENSP00000347373.5:p.Phe1030Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4307T>A
  hgvsp: ENSP00000438164.1:p.Phe1436Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3086T>A
  hgvsp: ENSP00000380741.3:p.Phe1029Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4307T>A
  hgvsp: ENSP00000370593.3:p.Phe1436Tyr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4307T>A
  hgvsp: ENSP00000348812.5:p.Phe1436Tyr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe1436Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

9-8389319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389319
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389319
    reference: chr 9
allele count: 4
allele frequency: 3.298261816022956e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4299C>T
  hgvsp: ENST00000356435.5:c.4299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3078C>T
  hgvsp: ENST00000397606.3:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3081C>T
  hgvsp: ENST00000355233.5:c.3081C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4233C>T
  hgvsp: ENST00000358503.5:c.4233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3078C>T
  hgvsp: ENST00000486161.1:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3069C>T
  hgvsp: ENST00000397611.3:c.3069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4260C>T
  hgvsp: ENST00000360074.4:c.4260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3078C>T
  hgvsp: ENST00000397617.3:c.3078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3069C>T
  hgvsp: ENST00000537002.1:c.3069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4299C>T
  hgvsp: ENST00000540109.1:c.4299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4299C>T
  hgvsp: ENST00000381196.4:c.4299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1433Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

9-8389328-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389328
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389328
    reference: chr 9
allele count: 49
allele frequency: 4.040037597084577e-4
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3072A>T
  hgvsp: ENST00000355233.5:c.3072A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3069A>T
  hgvsp: ENST00000486161.1:c.3069A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3069A>T
  hgvsp: ENST00000397617.3:c.3069A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4290A>T
  hgvsp: ENST00000381196.4:c.4290A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4251A>T
  hgvsp: ENST00000360074.4:c.4251A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4290A>T
  hgvsp: ENST00000356435.5:c.4290A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3060A>T
  hgvsp: ENST00000397611.3:c.3060A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3060A>T
  hgvsp: ENST00000537002.1:c.3060A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4224A>T
  hgvsp: ENST00000358503.5:c.4224A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4290A>T
  hgvsp: ENST00000540109.1:c.4290A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3069A>T
  hgvsp: ENST00000397606.3:c.3069A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1430Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-8389343-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389343
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389343
    reference: chr 9
allele count: 557
allele frequency: 4.593208318902248e-3
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3054T>C
  hgvsp: ENST00000486161.1:c.3054T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4236T>C
  hgvsp: ENST00000360074.4:c.4236T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3057T>C
  hgvsp: ENST00000355233.5:c.3057T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3054T>C
  hgvsp: ENST00000397617.3:c.3054T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3045T>C
  hgvsp: ENST00000537002.1:c.3045T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4209T>C
  hgvsp: ENST00000358503.5:c.4209T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4275T>C
  hgvsp: ENST00000356435.5:c.4275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3054T>C
  hgvsp: ENST00000397606.3:c.3054T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4275T>C
  hgvsp: ENST00000540109.1:c.4275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4275T>C
  hgvsp: ENST00000381196.4:c.4275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3045T>C
  hgvsp: ENST00000397611.3:c.3045T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 9.75e1
  variant carriers: 458
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Tyr1425Tyr
num of homozygotes: 9
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

9-8389344-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389344
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389344
    reference: chr 9
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3044A>G
  hgvsp: ENSP00000440515.1:p.Tyr1015Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4208A>G
  hgvsp: ENSP00000351293.5:p.Tyr1403Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4274A>G
  hgvsp: ENSP00000438164.1:p.Tyr1425Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3056A>G
  hgvsp: ENSP00000347373.5:p.Tyr1019Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3044A>G
  hgvsp: ENSP00000380735.3:p.Tyr1015Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4274A>G
  hgvsp: ENSP00000348812.5:p.Tyr1425Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4274A>G
  hgvsp: ENSP00000370593.3:p.Tyr1425Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3053A>G
  hgvsp: ENSP00000417093.1:p.Tyr1018Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4235A>G
  hgvsp: ENSP00000353187.4:p.Tyr1412Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3053A>G
  hgvsp: ENSP00000380741.3:p.Tyr1018Cys
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3053A>G
  hgvsp: ENSP00000380731.3:p.Tyr1018Cys
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1425Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

9-8389346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389346
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389346
    reference: chr 9
allele count: 3
allele frequency: 2.47390035129385e-5
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4272C>T
  hgvsp: ENST00000540109.1:c.4272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3042C>T
  hgvsp: ENST00000537002.1:c.3042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3051C>T
  hgvsp: ENST00000397617.3:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3054C>T
  hgvsp: ENST00000355233.5:c.3054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4272C>T
  hgvsp: ENST00000381196.4:c.4272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3051C>T
  hgvsp: ENST00000486161.1:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4233C>T
  hgvsp: ENST00000360074.4:c.4233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4206C>T
  hgvsp: ENST00000358503.5:c.4206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3051C>T
  hgvsp: ENST00000397606.3:c.3051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4272C>T
  hgvsp: ENST00000356435.5:c.4272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3042C>T
  hgvsp: ENST00000397611.3:c.3042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1424Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

9-8389364-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389364
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389364
    reference: chr 9
allele count: 60494
allele frequency: 4.991665979041175e-1
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3024G>C
  hgvsp: ENST00000537002.1:c.3024G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4215G>C
  hgvsp: ENST00000360074.4:c.4215G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3024G>C
  hgvsp: ENST00000397611.3:c.3024G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3036G>C
  hgvsp: ENST00000355233.5:c.3036G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3033G>C
  hgvsp: ENST00000486161.1:c.3033G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4254G>C
  hgvsp: ENST00000381196.4:c.4254G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3033G>C
  hgvsp: ENST00000397606.3:c.3033G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4254G>C
  hgvsp: ENST00000540109.1:c.4254G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4188G>C
  hgvsp: ENST00000358503.5:c.4188G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4254G>C
  hgvsp: ENST00000356435.5:c.4254G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3033G>C
  hgvsp: ENST00000397617.3:c.3033G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37007
  bin: 9.75e1
  variant carriers: 35942
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 8.25e1
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.25e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 720
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 823
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 4.75e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 4.25e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 6.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.25e1
  variant carriers: 1111
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 6.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 8.75e1
  variant carriers: 932
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 5.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.25e1
  variant carriers: 453
genotype quality: GenotypeQuality
hgvs: p.Gly1418Gly
num of homozygotes: 15446
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

9-8389369-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389369
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389369
    reference: chr 9
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3031G>C
  hgvsp: ENSP00000347373.5:p.Asp1011His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3028G>C
  hgvsp: ENSP00000417093.1:p.Asp1010His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3019G>C
  hgvsp: ENSP00000380735.3:p.Asp1007His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4210G>C
  hgvsp: ENSP00000353187.4:p.Asp1404His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4183G>C
  hgvsp: ENSP00000351293.5:p.Asp1395His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3019G>C
  hgvsp: ENSP00000440515.1:p.Asp1007His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4249G>C
  hgvsp: ENSP00000438164.1:p.Asp1417His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3028G>C
  hgvsp: ENSP00000380731.3:p.Asp1010His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4249G>C
  hgvsp: ENSP00000370593.3:p.Asp1417His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3028G>C
  hgvsp: ENSP00000380741.3:p.Asp1010His
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4249G>C
  hgvsp: ENSP00000348812.5:p.Asp1417His
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1417His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

9-8389372-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389372
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389372
    reference: chr 9
allele count: 1
allele frequency: 8.30592378484335e-6
allele num: 120396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3016A>G
  hgvsp: ENSP00000380735.3:p.Ile1006Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3025A>G
  hgvsp: ENSP00000380741.3:p.Ile1009Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3028A>G
  hgvsp: ENSP00000347373.5:p.Ile1010Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4180A>G
  hgvsp: ENSP00000351293.5:p.Ile1394Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4246A>G
  hgvsp: ENSP00000370593.3:p.Ile1416Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4207A>G
  hgvsp: ENSP00000353187.4:p.Ile1403Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3025A>G
  hgvsp: ENSP00000380731.3:p.Ile1009Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4246A>G
  hgvsp: ENSP00000348812.5:p.Ile1416Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3016A>G
  hgvsp: ENSP00000440515.1:p.Ile1006Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4246A>G
  hgvsp: ENSP00000438164.1:p.Ile1416Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3025A>G
  hgvsp: ENSP00000417093.1:p.Ile1009Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile1416Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-8389377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389377
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389377
    reference: chr 9
allele count: 1
allele frequency: 8.326810664979099e-6
allele num: 120094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3011A>G
  hgvsp: ENSP00000440515.1:p.Asn1004Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3020A>G
  hgvsp: ENSP00000380741.3:p.Asn1007Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4175A>G
  hgvsp: ENSP00000351293.5:p.Asn1392Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4241A>G
  hgvsp: ENSP00000370593.3:p.Asn1414Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3020A>G
  hgvsp: ENSP00000380731.3:p.Asn1007Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4202A>G
  hgvsp: ENSP00000353187.4:p.Asn1401Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3023A>G
  hgvsp: ENSP00000347373.5:p.Asn1008Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3020A>G
  hgvsp: ENSP00000417093.1:p.Asn1007Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4241A>G
  hgvsp: ENSP00000348812.5:p.Asn1414Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3011A>G
  hgvsp: ENSP00000380735.3:p.Asn1004Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4241A>G
  hgvsp: ENSP00000438164.1:p.Asn1414Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1414Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

9-8389384-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389384
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389384
    reference: chr 9
allele count: 2
allele frequency: 1.676024469957262e-5
allele num: 119330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3013A>G
  hgvsp: ENSP00000380741.3:p.Asn1005Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4234A>G
  hgvsp: ENSP00000348812.5:p.Asn1412Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4234A>G
  hgvsp: ENSP00000438164.1:p.Asn1412Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4195A>G
  hgvsp: ENSP00000353187.4:p.Asn1399Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3016A>G
  hgvsp: ENSP00000347373.5:p.Asn1006Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.3004A>G
  hgvsp: ENSP00000380735.3:p.Asn1002Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4168A>G
  hgvsp: ENSP00000351293.5:p.Asn1390Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.3004A>G
  hgvsp: ENSP00000440515.1:p.Asn1002Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3013A>G
  hgvsp: ENSP00000417093.1:p.Asn1005Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3013A>G
  hgvsp: ENSP00000380731.3:p.Asn1005Asp
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4234A>G
  hgvsp: ENSP00000370593.3:p.Asn1412Asp
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1412Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-8389397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389397
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389397
    reference: chr 9
allele count: 1
allele frequency: 8.466396870819716e-6
allele num: 118114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2991A>G
  hgvsp: ENST00000397611.3:c.2991A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4221A>G
  hgvsp: ENST00000356435.5:c.4221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4155A>G
  hgvsp: ENST00000358503.5:c.4155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4221A>G
  hgvsp: ENST00000540109.1:c.4221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4221A>G
  hgvsp: ENST00000381196.4:c.4221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.3000A>G
  hgvsp: ENST00000397617.3:c.3000A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2991A>G
  hgvsp: ENST00000537002.1:c.2991A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.3000A>G
  hgvsp: ENST00000486161.1:c.3000A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.3000A>G
  hgvsp: ENST00000397606.3:c.3000A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4182A>G
  hgvsp: ENST00000360074.4:c.4182A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.3003A>G
  hgvsp: ENST00000355233.5:c.3003A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1407Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

9-8389404-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389404
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389404
    reference: chr 9
allele count: 1
allele frequency: 8.50933474021001e-6
allele num: 117518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4148T>A
  hgvsp: ENSP00000351293.5:p.Ile1383Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4214T>A
  hgvsp: ENSP00000348812.5:p.Ile1405Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2984T>A
  hgvsp: ENSP00000440515.1:p.Ile995Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2996T>A
  hgvsp: ENSP00000347373.5:p.Ile999Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4214T>A
  hgvsp: ENSP00000370593.3:p.Ile1405Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2993T>A
  hgvsp: ENSP00000380741.3:p.Ile998Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2993T>A
  hgvsp: ENSP00000417093.1:p.Ile998Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4175T>A
  hgvsp: ENSP00000353187.4:p.Ile1392Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2993T>A
  hgvsp: ENSP00000380731.3:p.Ile998Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2984T>A
  hgvsp: ENSP00000380735.3:p.Ile995Asn
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4214T>A
  hgvsp: ENSP00000438164.1:p.Ile1405Asn
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile1405Asn
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-8389415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389415
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389415
    reference: chr 9
allele count: 1
allele frequency: 8.575593859874796e-6
allele num: 116610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-8T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-8T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.4211-8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

9-8389419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389419
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389419
    reference: chr 9
allele count: 2
allele frequency: 1.720696537958566e-5
allele num: 116232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-12C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-12C>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

9-8389420-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389420
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389420
    reference: chr 9
allele count: 1
allele frequency: 8.606000103272e-6
allele num: 116198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-13C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-13C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-8389422-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389422
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389422
    reference: chr 9
allele count: 2
allele frequency: 1.723187207058175e-5
allele num: 116064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-15C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-15C>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

9-8389424-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389424
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389424
    reference: chr 9
allele count: 1
allele frequency: 8.629616845012081e-6
allele num: 115880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-17C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-17C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-8389425-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389425
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389425
    reference: chr 9
allele count: 3
allele frequency: 2.591479216336685e-5
allele num: 115764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-18A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-18A>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

9-8389426-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389426
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389427
    reference: chr 9
allele count: 3
allele frequency: 2.593764589925818e-5
allele num: 115662
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-20dupT
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-20dupT
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

9-8389427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389427
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389427
    reference: chr 9
allele count: 18
allele frequency: 1.557497620489747e-4
allele num: 115570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-20T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-20T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-8389434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389434
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389434
    reference: chr 9
allele count: 1
allele frequency: 8.732404205525866e-6
allele num: 114516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-27G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-27G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-8389435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389435
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389435
    reference: chr 9
allele count: 1
allele frequency: 8.727221950708651e-6
allele num: 114584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-28T>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-28T>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

9-8389437-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389437
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389437
    reference: chr 9
allele count: 6
allele frequency: 5.241273279988819e-5
allele num: 114476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-30C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-30C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

9-8389439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389439
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389439
    reference: chr 9
allele count: 1
allele frequency: 8.751662815935028e-6
allele num: 114264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-32C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-32C>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-8389459-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8389459
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8389459
    reference: chr 9
allele count: 1
allele frequency: 8.903926631644555e-6
allele num: 112310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4211-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2993-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4145-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2990-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4211-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2981-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2981-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2990-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4172-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2990-52G>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4211-52G>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-8404497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404497
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404497
    reference: chr 9
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2980+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4210+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4144+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2992+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2989+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4171+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4210+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2989+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2989+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2980+40G>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4210+40G>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-8404510-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404510
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404510
    reference: chr 9
allele count: 2
allele frequency: 1.670955452327641e-5
allele num: 119692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2989+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4144+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2989+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2980+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2992+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4171+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2989+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2980+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4210+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4210+27C>G
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4210+27C>G
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-8404510-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404510
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404510
    reference: chr 9
allele count: 6
allele frequency: 5.012866356982923e-5
allele num: 119692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4144+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2989+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2989+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2980+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2989+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4210+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2992+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2980+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4210+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4210+27C>A
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4171+27C>A
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

9-8404517-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404517
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404517
    reference: chr 9
allele count: 2
allele frequency: 1.666972278251013e-5
allele num: 119978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4210+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4171+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2980+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2980+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2989+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4144+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4210+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2992+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4210+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2989+20A>C
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2989+20A>C
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7484
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

9-8404518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404518
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404518
    reference: chr 9
allele count: 2
allele frequency: 1.665889251682548e-5
allele num: 120056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2989+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4210+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2989+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4210+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4171+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4210+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4144+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2980+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2992+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2980+19C>T
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2989+19C>T
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-8404542-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404542
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404542
    reference: chr 9
allele count: 2
allele frequency: 1.654506047219603e-5
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2984T>C
  hgvsp: ENSP00000380731.3:p.Ile995Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4166T>C
  hgvsp: ENSP00000353187.4:p.Ile1389Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2984T>C
  hgvsp: ENSP00000380741.3:p.Ile995Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2975T>C
  hgvsp: ENSP00000440515.1:p.Ile992Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2987T>C
  hgvsp: ENSP00000347373.5:p.Ile996Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4205T>C
  hgvsp: ENSP00000438164.1:p.Ile1402Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2984T>C
  hgvsp: ENSP00000417093.1:p.Ile995Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4139T>C
  hgvsp: ENSP00000351293.5:p.Ile1380Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2975T>C
  hgvsp: ENSP00000380735.3:p.Ile992Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4205T>C
  hgvsp: ENSP00000348812.5:p.Ile1402Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4205T>C
  hgvsp: ENSP00000370593.3:p.Ile1402Thr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile1402Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-8404546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404546
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404546
    reference: chr 9
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4162G>A
  hgvsp: ENSP00000353187.4:p.Ala1388Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4201G>A
  hgvsp: ENSP00000370593.3:p.Ala1401Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2971G>A
  hgvsp: ENSP00000380735.3:p.Ala991Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4135G>A
  hgvsp: ENSP00000351293.5:p.Ala1379Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2980G>A
  hgvsp: ENSP00000417093.1:p.Ala994Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2980G>A
  hgvsp: ENSP00000380731.3:p.Ala994Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2971G>A
  hgvsp: ENSP00000440515.1:p.Ala991Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2980G>A
  hgvsp: ENSP00000380741.3:p.Ala994Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2983G>A
  hgvsp: ENSP00000347373.5:p.Ala995Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4201G>A
  hgvsp: ENSP00000438164.1:p.Ala1401Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4201G>A
  hgvsp: ENSP00000348812.5:p.Ala1401Thr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1401Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-8404547-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404547
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404547
    reference: chr 9
allele count: 5
allele frequency: 4.133871287783583e-5
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2979A>T
  hgvsp: ENST00000397606.3:c.2979A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2979A>T
  hgvsp: ENST00000486161.1:c.2979A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4200A>T
  hgvsp: ENST00000540109.1:c.4200A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4200A>T
  hgvsp: ENST00000381196.4:c.4200A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2970A>T
  hgvsp: ENST00000537002.1:c.2970A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2979A>T
  hgvsp: ENST00000397617.3:c.2979A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4161A>T
  hgvsp: ENST00000360074.4:c.4161A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4134A>T
  hgvsp: ENST00000358503.5:c.4134A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2970A>T
  hgvsp: ENST00000397611.3:c.2970A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4200A>T
  hgvsp: ENST00000356435.5:c.4200A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2982A>T
  hgvsp: ENST00000355233.5:c.2982A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1400Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-8404547-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404547
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404547
    reference: chr 9
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2979A>C
  hgvsp: ENST00000486161.1:c.2979A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2970A>C
  hgvsp: ENST00000537002.1:c.2970A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4200A>C
  hgvsp: ENST00000381196.4:c.4200A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2979A>C
  hgvsp: ENST00000397606.3:c.2979A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4200A>C
  hgvsp: ENST00000356435.5:c.4200A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2970A>C
  hgvsp: ENST00000397611.3:c.2970A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4134A>C
  hgvsp: ENST00000358503.5:c.4134A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4161A>C
  hgvsp: ENST00000360074.4:c.4161A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2979A>C
  hgvsp: ENST00000397617.3:c.2979A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4200A>C
  hgvsp: ENST00000540109.1:c.4200A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2982A>C
  hgvsp: ENST00000355233.5:c.2982A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1400Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

9-8404552-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404552
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404552
    reference: chr 9
allele count: 2
allele frequency: 1.653466492501529e-5
allele num: 120958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2965C>G
  hgvsp: ENSP00000380735.3:p.Leu989Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2965C>G
  hgvsp: ENSP00000440515.1:p.Leu989Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2977C>G
  hgvsp: ENSP00000347373.5:p.Leu993Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4195C>G
  hgvsp: ENSP00000348812.5:p.Leu1399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4156C>G
  hgvsp: ENSP00000353187.4:p.Leu1386Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2974C>G
  hgvsp: ENSP00000380741.3:p.Leu992Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2974C>G
  hgvsp: ENSP00000417093.1:p.Leu992Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4129C>G
  hgvsp: ENSP00000351293.5:p.Leu1377Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4195C>G
  hgvsp: ENSP00000438164.1:p.Leu1399Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2974C>G
  hgvsp: ENSP00000380731.3:p.Leu992Val
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4195C>G
  hgvsp: ENSP00000370593.3:p.Leu1399Val
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1399Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

9-8404553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404553
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404553
    reference: chr 9
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4194C>T
  hgvsp: ENST00000356435.5:c.4194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4194C>T
  hgvsp: ENST00000381196.4:c.4194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2973C>T
  hgvsp: ENST00000397606.3:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4155C>T
  hgvsp: ENST00000360074.4:c.4155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2973C>T
  hgvsp: ENST00000486161.1:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4128C>T
  hgvsp: ENST00000358503.5:c.4128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2973C>T
  hgvsp: ENST00000397617.3:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2964C>T
  hgvsp: ENST00000537002.1:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2964C>T
  hgvsp: ENST00000397611.3:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4194C>T
  hgvsp: ENST00000540109.1:c.4194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2976C>T
  hgvsp: ENST00000355233.5:c.2976C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1398Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

9-8404560-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404560
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404560
    reference: chr 9
allele count: 8
allele frequency: 6.613100552193897e-5
allele num: 120972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2969G>A
  hgvsp: ENSP00000347373.5:p.Arg990Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4187G>A
  hgvsp: ENSP00000370593.3:p.Arg1396Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2966G>A
  hgvsp: ENSP00000417093.1:p.Arg989Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2966G>A
  hgvsp: ENSP00000380741.3:p.Arg989Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2966G>A
  hgvsp: ENSP00000380731.3:p.Arg989Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2957G>A
  hgvsp: ENSP00000440515.1:p.Arg986Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4121G>A
  hgvsp: ENSP00000351293.5:p.Arg1374Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4187G>A
  hgvsp: ENSP00000348812.5:p.Arg1396Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4187G>A
  hgvsp: ENSP00000438164.1:p.Arg1396Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4148G>A
  hgvsp: ENSP00000353187.4:p.Arg1383Gln
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2957G>A
  hgvsp: ENSP00000380735.3:p.Arg986Gln
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1396Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

9-8404561-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404561
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404561
    reference: chr 9
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4186C>A
  hgvsp: ENST00000381196.4:c.4186C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2968C>A
  hgvsp: ENST00000355233.5:c.2968C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2965C>A
  hgvsp: ENST00000486161.1:c.2965C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4186C>A
  hgvsp: ENST00000540109.1:c.4186C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2956C>A
  hgvsp: ENST00000537002.1:c.2956C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4186C>A
  hgvsp: ENST00000356435.5:c.4186C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2965C>A
  hgvsp: ENST00000397606.3:c.2965C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4120C>A
  hgvsp: ENST00000358503.5:c.4120C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4147C>A
  hgvsp: ENST00000360074.4:c.4147C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2965C>A
  hgvsp: ENST00000397617.3:c.2965C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2956C>A
  hgvsp: ENST00000397611.3:c.2956C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1396Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-8404565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404565
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404565
    reference: chr 9
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4182T>C
  hgvsp: ENST00000356435.5:c.4182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2961T>C
  hgvsp: ENST00000486161.1:c.2961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4116T>C
  hgvsp: ENST00000358503.5:c.4116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2952T>C
  hgvsp: ENST00000397611.3:c.2952T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2961T>C
  hgvsp: ENST00000397606.3:c.2961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2964T>C
  hgvsp: ENST00000355233.5:c.2964T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2952T>C
  hgvsp: ENST00000537002.1:c.2952T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4182T>C
  hgvsp: ENST00000540109.1:c.4182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4143T>C
  hgvsp: ENST00000360074.4:c.4143T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4182T>C
  hgvsp: ENST00000381196.4:c.4182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2961T>C
  hgvsp: ENST00000397617.3:c.2961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His1394His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

9-8404574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404574
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404574
    reference: chr 9
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4173A>G
  hgvsp: ENST00000381196.4:c.4173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4134A>G
  hgvsp: ENST00000360074.4:c.4134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2952A>G
  hgvsp: ENST00000397617.3:c.2952A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2943A>G
  hgvsp: ENST00000397611.3:c.2943A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2955A>G
  hgvsp: ENST00000355233.5:c.2955A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4173A>G
  hgvsp: ENST00000540109.1:c.4173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4107A>G
  hgvsp: ENST00000358503.5:c.4107A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2952A>G
  hgvsp: ENST00000397606.3:c.2952A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4173A>G
  hgvsp: ENST00000356435.5:c.4173A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2943A>G
  hgvsp: ENST00000537002.1:c.2943A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2952A>G
  hgvsp: ENST00000486161.1:c.2952A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1391Ala
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

9-8404576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404576
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404576
    reference: chr 9
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4171G>A
  hgvsp: ENSP00000370593.3:p.Ala1391Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2953G>A
  hgvsp: ENSP00000347373.5:p.Ala985Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2941G>A
  hgvsp: ENSP00000380735.3:p.Ala981Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2941G>A
  hgvsp: ENSP00000440515.1:p.Ala981Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2950G>A
  hgvsp: ENSP00000380731.3:p.Ala984Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4132G>A
  hgvsp: ENSP00000353187.4:p.Ala1378Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2950G>A
  hgvsp: ENSP00000417093.1:p.Ala984Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4171G>A
  hgvsp: ENSP00000348812.5:p.Ala1391Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4171G>A
  hgvsp: ENSP00000438164.1:p.Ala1391Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4105G>A
  hgvsp: ENSP00000351293.5:p.Ala1369Thr
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2950G>A
  hgvsp: ENSP00000380741.3:p.Ala984Thr
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1391Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

9-8404577-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404577
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404577
    reference: chr 9
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2949C>T
  hgvsp: ENST00000486161.1:c.2949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2952C>T
  hgvsp: ENST00000355233.5:c.2952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4170C>T
  hgvsp: ENST00000540109.1:c.4170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4170C>T
  hgvsp: ENST00000381196.4:c.4170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2949C>T
  hgvsp: ENST00000397617.3:c.2949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2949C>T
  hgvsp: ENST00000397606.3:c.2949C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2940C>T
  hgvsp: ENST00000537002.1:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4131C>T
  hgvsp: ENST00000360074.4:c.4131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2940C>T
  hgvsp: ENST00000397611.3:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4104C>T
  hgvsp: ENST00000358503.5:c.4104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4170C>T
  hgvsp: ENST00000356435.5:c.4170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile1390Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-8404584-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404584
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404584
    reference: chr 9
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4097A>G
  hgvsp: ENSP00000351293.5:p.Asn1366Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4163A>G
  hgvsp: ENSP00000370593.3:p.Asn1388Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4163A>G
  hgvsp: ENSP00000348812.5:p.Asn1388Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2945A>G
  hgvsp: ENSP00000347373.5:p.Asn982Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2942A>G
  hgvsp: ENSP00000417093.1:p.Asn981Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2933A>G
  hgvsp: ENSP00000440515.1:p.Asn978Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2933A>G
  hgvsp: ENSP00000380735.3:p.Asn978Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4124A>G
  hgvsp: ENSP00000353187.4:p.Asn1375Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2942A>G
  hgvsp: ENSP00000380731.3:p.Asn981Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2942A>G
  hgvsp: ENSP00000380741.3:p.Asn981Ser
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4163A>G
  hgvsp: ENSP00000438164.1:p.Asn1388Ser
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn1388Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-8404586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404586
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404586
    reference: chr 9
allele count: 10
allele frequency: 8.276638360563474e-5
allele num: 120822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2931G>A
  hgvsp: ENST00000397611.3:c.2931G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4095G>A
  hgvsp: ENST00000358503.5:c.4095G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2931G>A
  hgvsp: ENST00000537002.1:c.2931G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2943G>A
  hgvsp: ENST00000355233.5:c.2943G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4161G>A
  hgvsp: ENST00000381196.4:c.4161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2940G>A
  hgvsp: ENST00000397606.3:c.2940G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2940G>A
  hgvsp: ENST00000397617.3:c.2940G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4122G>A
  hgvsp: ENST00000360074.4:c.4122G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2940G>A
  hgvsp: ENST00000486161.1:c.2940G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4161G>A
  hgvsp: ENST00000356435.5:c.4161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4161G>A
  hgvsp: ENST00000540109.1:c.4161G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19296
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1387Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-8404589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 8404589
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 8404589
    reference: chr 9
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000370593
  ensembl transcript: ENST00000381196
  gene symbol: PTPRD
  hgvsc: ENST00000381196.4:c.4158C>T
  hgvsp: ENST00000381196.4:c.4158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000353187
  ensembl transcript: ENST00000360074
  gene symbol: PTPRD
  hgvsc: ENST00000360074.4:c.4119C>T
  hgvsp: ENST00000360074.4:c.4119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000351293
  ensembl transcript: ENST00000358503
  gene symbol: PTPRD
  hgvsc: ENST00000358503.5:c.4092C>T
  hgvsp: ENST00000358503.5:c.4092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000348812
  ensembl transcript: ENST00000356435
  gene symbol: PTPRD
  hgvsc: ENST00000356435.5:c.4158C>T
  hgvsp: ENST00000356435.5:c.4158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380731
  ensembl transcript: ENST00000397606
  gene symbol: PTPRD
  hgvsc: ENST00000397606.3:c.2937C>T
  hgvsp: ENST00000397606.3:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000440515
  ensembl transcript: ENST00000537002
  gene symbol: PTPRD
  hgvsc: ENST00000537002.1:c.2928C>T
  hgvsp: ENST00000537002.1:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000347373
  ensembl transcript: ENST00000355233
  gene symbol: PTPRD
  hgvsc: ENST00000355233.5:c.2940C>T
  hgvsp: ENST00000355233.5:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000417093
  ensembl transcript: ENST00000486161
  gene symbol: PTPRD
  hgvsc: ENST00000486161.1:c.2937C>T
  hgvsp: ENST00000486161.1:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000438164
  ensembl transcript: ENST00000540109
  gene symbol: PTPRD
  hgvsc: ENST00000540109.1:c.4158C>T
  hgvsp: ENST00000540109.1:c.4158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380735
  ensembl transcript: ENST00000397611
  gene symbol: PTPRD
  hgvsc: ENST00000397611.3:c.2928C>T
  hgvsp: ENST00000397611.3:c.2928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000153707
  ensembl protein: ENSP00000380741
  ensembl transcript: ENST00000397617
  gene symbol: PTPRD
  hgvsc: ENST00000397617.3:c.2937C>T
  hgvsp: ENST00000397617.3:c.2937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9668
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19291
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1386Tyr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 759
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559429872438636e-5
allele num: 64126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.594e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.454e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 3.335303e6

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 144
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.995e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.451e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.577e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

DP
type: SiteQuality
SIO_000300: 3.335935e6

GenotypeQuality
all individuals: 1443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
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GenotypeQuality
all individuals: 918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48132
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

African
type: Population
allele count: 56
allele frequency: 5.494505494505495e-3
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.469135802469136e-3
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.623294858342078e-4
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.67741432536094e-5
allele num: 64138
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 3.33721e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
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variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1459
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558846453624318e-5
allele num: 64150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 3.341567e6

FS
type: SiteQuality
SIO_000300: 1.965e0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.355e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

DP
type: SiteQuality
SIO_000300: 3.343401e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48150
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117304155366439e-5
allele num: 64158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747030048916841e-4
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

DP
type: SiteQuality
SIO_000300: 3.343401e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 1218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 48150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 3.344469e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48159
bin: 9.75e1
variant carriers: 83

GenotypeQuality
all individuals: 522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 78
allele frequency: 6.808659217877095e-3
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.918495297805642e-4
allele num: 10208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556226462074761e-5
allele num: 64258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.546e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 3.352961e6

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 4.788e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
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GenotypeQuality
all individuals: 1434
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GenotypeQuality
all individuals: 1094
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variant carriers: 0

GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 48154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1461
bin: 9.25e1
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
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GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 7.5e0
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GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555597038143239e-5
allele num: 64284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 3.352934e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.34e1

MQ
type: SiteQuality
SIO_000300: 6.088e1

GenotypeQuality
all individuals: 1461
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.5e0
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GenotypeQuality
all individuals: 3489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 3.353724e6

FS
type: SiteQuality
SIO_000300: 3.832e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

GenotypeQuality
all individuals: 3651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
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GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.242892210173073e-4
allele num: 64366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

DP
type: SiteQuality
SIO_000300: 3.358235e6

FS
type: SiteQuality
SIO_000300: 3.037e0

QD
type: SiteQuality
SIO_000300: 1.362e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 30

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64406
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.735978112175103e-3
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 3.360806e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

QD
type: SiteQuality
SIO_000300: 1.448e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeQuality
all individuals: 3616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 398
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 48163
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 803
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 1101
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variant carriers: 0

GenotypeQuality
all individuals: 1459
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variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.6553489959964e-5
allele num: 64442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.361906e6

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.001e0

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.77e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 373
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variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 803
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variant carriers: 0

GenotypeQuality
all individuals: 3606
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variant carriers: 0

GenotypeQuality
all individuals: 534
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variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 48164
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 855
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55077228459773e-5
allele num: 64484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.798e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 1.9945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 3.362657e6

VQSLOD
type: SiteQuality
SIO_000300: -2.578e0

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 3.420613e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.368e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.978999999999999e0

FS
type: SiteQuality
SIO_000300: 3.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

GenotypeDepth
all individuals: 2909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.342762907522517e-5
allele num: 15766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.427479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.055e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1017
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GenotypeQuality
all individuals: 822
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.265822784810127e-4
allele num: 15800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 3.557e0

DP
type: SiteQuality
SIO_000300: 3.428129e6

GenotypeDepth
all individuals: 2910
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 2.27e-1

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 8.38e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

QD
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SIO_000300: 1.238e1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 3.431334e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1191
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -4.004e0

DP
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SIO_000300: 3.434948e6

FS
type: SiteQuality
SIO_000300: 9.468999999999999e0

QD
type: SiteQuality
SIO_000300: 1.125e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5430
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007971123477215e-5
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

BaseQRankSum
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SIO_000300: 4.43e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

DP
type: SiteQuality
SIO_000300: 3.437403e6

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.132711885195633e-5
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
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SIO_000300: -6.840000000000001e-1

MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

DP
type: SiteQuality
SIO_000300: 3.438069e6

MQRankSum
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SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 707
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

QD
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SIO_000300: 1.642e1

InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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SIO_000300: 7.36e0

MQRankSum
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SIO_000300: -1.02e-1

ClippingRankSum
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SIO_000300: -1.421e0

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 3.44171e6

MQ
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SIO_000300: 5.924e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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DP
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501530520376928e-5
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.444e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 3.443116e6

FS
type: SiteQuality
SIO_000300: 2.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeDepth
all individuals: 2908
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48193
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 6.901311249137336e-4
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

DP
type: SiteQuality
SIO_000300: 3.447632e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeDepth
all individuals: 5076
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48280
bin: 9.75e1
variant carriers: 548

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.161507867888639e-3
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 517
allele frequency: 4.969242599000385e-2
allele num: 10404
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.950663225496669e-4
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.527e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 3.488537e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

FS
type: SiteQuality
SIO_000300: 2.457e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeDepth
all individuals: 4882
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48269
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.681e0

DP
type: SiteQuality
SIO_000300: 3.48368e6

QD
type: SiteQuality
SIO_000300: 1.668e1

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.4e0

VQSLOD
type: SiteQuality
SIO_000300: -5.33e-2

GenotypeDepth
all individuals: 991
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48268
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819063788503517e-4
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 3.483707e6

QD
type: SiteQuality
SIO_000300: 1.305e1

VQSLOD
type: SiteQuality
SIO_000300: -1.203e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.65e-1

FS
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

GenotypeDepth
all individuals: 1907
bin: 5.75e1
variant carriers: 314

GenotypeQuality
all individuals: 103
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 5

GenotypeQuality
all individuals: 56354
bin: 9.75e1
variant carriers: 44520

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 10
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variant carriers: 3

GenotypeQuality
all individuals: 217
bin: 7.25e1
variant carriers: 33

GenotypeQuality
all individuals: 14
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variant carriers: 5

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 427
bin: 7.75e1
variant carriers: 98

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 97

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 57

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 20

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 96

GenotypeQuality
all individuals: 396
bin: 6.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1505
bin: 6.25e1
variant carriers: 35

European (Non-Finnish)
type: Population
allele count: 29976
allele frequency: 4.499009425466771e-1
allele num: 66628
num of homozygotes: 6759

Other
type: Population
allele count: 461
allele frequency: 5.077092511013216e-1
allele num: 908
num of homozygotes: 112

East Asian
type: Population
allele count: 5702
allele frequency: 6.598009719972229e-1
allele num: 8642
num of homozygotes: 1905

European (Finnish)
type: Population
allele count: 3238
allele frequency: 4.898638426626324e-1
allele num: 6610
num of homozygotes: 810

Latino
type: Population
allele count: 5702
allele frequency: 4.930819785541335e-1
allele num: 11564
num of homozygotes: 1414

African
type: Population
allele count: 6077
allele frequency: 5.841022683583237e-1
allele num: 10404
num of homozygotes: 1767

South Asian
type: Population
allele count: 9338
allele frequency: 5.682122429110381e-1
allele num: 16434
num of homozygotes: 2679

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

QD
type: SiteQuality
SIO_000300: 2.015e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.761e0

DP
type: SiteQuality
SIO_000300: 6.936829e6

GenotypeDepth
all individuals: 6737
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 2815
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
all individuals: 1878
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 5999
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 2263
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GenotypeQuality
all individuals: 2122
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 968
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variant carriers: 0

GenotypeQuality
all individuals: 42259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.283e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.215e0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.77e1

DP
type: SiteQuality
SIO_000300: 3.396239e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeDepth
all individuals: 6582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 836
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2815
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: -1.58e0

FS
type: SiteQuality
SIO_000300: 1.0821e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.279e0

MQRankSum
type: SiteQuality
SIO_000300: -1.902e0

QD
type: SiteQuality
SIO_000300: 1.793e1

DP
type: SiteQuality
SIO_000300: 3.391631e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.851e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1138
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

FS
type: SiteQuality
SIO_000300: 1.463e0

QD
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VQSLOD
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SIO_000300: -1.809e0

DP
type: SiteQuality
SIO_000300: 3.384393e6

MQRankSum
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SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.002e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.024345985180705e-5
allele num: 66130
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.693e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
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SIO_000300: 4.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 3.36935e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.775e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 2849
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1823
bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52031135976648e-5
allele num: 65776
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

FS
type: SiteQuality
SIO_000300: 2.679e0

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 3.347391e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 888
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GenotypeQuality
all individuals: 1362
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523043650431021e-5
allele num: 65658
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.029e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 3.337747e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

FS
type: SiteQuality
SIO_000300: 7.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: -1.103e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.585e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.530120481927712e-5
allele num: 13280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.060350104051904e-5
allele num: 65352
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12992
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12976
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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FS
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SIO_000300: 2.037e0

ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12904
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.327205026762858e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.2e-2

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 6.335e0

BaseQRankSum
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SIO_000300: -2.935e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 3.320381e6

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532848953064165e-5
allele num: 65238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
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SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.509e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 3.318935e6

FS
type: SiteQuality
SIO_000300: 2.961e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12676
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.908103916246607e-4
allele num: 10316
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -5.83e-1

DP
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
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SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.42e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.067296484878228e-5
allele num: 65204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.502e1

ReadPosRankSum
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SIO_000300: 0.0e0

DP
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SIO_000300: 3.317192e6

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQ
type: SiteQuality
SIO_000300: 6.01e1

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.544e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 18
allele frequency: 1.745539177657099e-3
allele num: 10312
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65168
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.540215014015957e-5
allele num: 64926
num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 850
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
type: Population
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East Asian
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64916
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.224660397074191e-4
allele num: 11484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 3.586e0

DP
type: SiteQuality
SIO_000300: 3.307756e6

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.59e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 42232
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541354542371836e-5
allele num: 64878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.246e1

DP
type: SiteQuality
SIO_000300: 3.306061e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.741e0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

GenotypeQuality
all individuals: 1325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552264754276489e-5
allele num: 64422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.65e0

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 2.402e0

DP
type: SiteQuality
SIO_000300: 3.294963e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 649
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variant carriers: 0

GenotypeQuality
all individuals: 2359
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5826
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 1.0479e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.808012e6

QD
type: SiteQuality
SIO_000300: 3.267e1

GenotypeQuality
all individuals: 880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 36316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7417
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variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5827
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1522
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511258878645912e-5
allele num: 66170
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.82457e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.374e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 5.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 36316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5827
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.045035514583648e-5
allele num: 66170
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.285512276642242e-4
allele num: 15558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 1.82457e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.374e0

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 5.549e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 2584
bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.067e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 1.834635e6

FS
type: SiteQuality
SIO_000300: 4.308e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 7493
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GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5823
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 306
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GenotypeQuality
all individuals: 791
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 37445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.339181286549708e-4
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.835902e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.803e0

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeDepth
all individuals: 1228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1514
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
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GenotypeQuality
all individuals: 7571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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African
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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QD
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DP
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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South Asian
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East Asian
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Other
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Latino
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66550
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South Asian
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Latino
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African
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Other
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East Asian
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European (Finnish)
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VQSLOD
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FS
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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FS
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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Latino
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African
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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FS
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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Latino
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South Asian
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African
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European (Finnish)
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Other
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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MQ
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SIO_000300: 5.95e1

FS
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66516
num of homozygotes: 0

South Asian
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Latino
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African
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European (Finnish)
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Other
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East Asian
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66488
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African
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Other
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East Asian
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European (Finnish)
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South Asian
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Latino
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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DP
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MQ
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QD
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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