12-122845667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845667
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845667
    reference: chr 12
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.844G>A
  hgvsp: ENSP00000439093.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.844G>A
  hgvsp: ENSP00000445531.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.844G>A
  hgvsp: ENSP00000446379.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.844G>A
  hgvsp: ENSP00000303585.7:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-54G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.844G>A
  hgvsp: ENSP00000437786.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.844G>A
  hgvsp: ENSP00000355314.4:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.844G>A
  hgvsp: ENSP00000441409.1:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.844G>A
  hgvsp: ENSP00000351665.2:p.Gly282Ser
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly282Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

12-122845669-ATCTTGGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845669
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845662
    reference: chr 12
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.835_841delACCAAGA
  hgvsp: ENSP00000439093.1:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-63_-57delACCAAGA
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.835_841delACCAAGA
  hgvsp: ENSP00000437786.1:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.835_841delACCAAGA
  hgvsp: ENSP00000351665.2:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.835_841delACCAAGA
  hgvsp: ENSP00000446379.1:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.835_841delACCAAGA
  hgvsp: ENSP00000445531.1:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.835_841delACCAAGA
  hgvsp: ENSP00000441409.1:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.835_841delACCAAGA
  hgvsp: ENSP00000303585.7:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.835_841delACCAAGA
  hgvsp: ENSP00000355314.4:p.Thr279LeufsTer16
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr279LeufsTer16
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: ATCTTGGT
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

12-122845669-ATCTTGGTAACTTTGTGGACAGGAGCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845669
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845643
    reference: chr 12
allele count: 4
allele frequency: 3.298969072164949e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsp: ENSP00000303585.7:p.Ala273TrpfsTer57
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsp: ENSP00000441409.1:p.Ala273TrpfsTer74
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsp: ENSP00000439093.1:p.Ala273TrpfsTer57
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsp: ENSP00000355314.4:p.Ala273TrpfsTer57
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsp: ENSP00000437786.1:p.Ala273TrpfsTer74
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsp: ENSP00000446379.1:p.Ala273TrpfsTer98
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsp: ENSP00000445531.1:p.Ala273TrpfsTer57
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsp: ENSP00000351665.2:p.Ala273TrpfsTer57
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala273TrpfsTer57
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: ATCTTGGTAACTTTGTGGACAGGAGCG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

12-122845671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845671
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845671
    reference: chr 12
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.840G>A
  hgvsp: ENST00000537178.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.840G>A
  hgvsp: ENST00000358808.2:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.840G>A
  hgvsp: ENST00000540338.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.840G>A
  hgvsp: ENST00000537004.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.840G>A
  hgvsp: ENST00000361654.4:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.840G>A
  hgvsp: ENST00000541108.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.840G>A
  hgvsp: ENST00000302528.7:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.840G>A
  hgvsp: ENST00000540304.1:c.840G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6916
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys280Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

12-122845673-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845673
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845673
    reference: chr 12
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.838A>C
  hgvsp: ENSP00000439093.1:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.838A>C
  hgvsp: ENSP00000437786.1:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.838A>C
  hgvsp: ENSP00000355314.4:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-60A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.838A>C
  hgvsp: ENSP00000303585.7:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.838A>C
  hgvsp: ENSP00000445531.1:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.838A>C
  hgvsp: ENSP00000351665.2:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.838A>C
  hgvsp: ENSP00000446379.1:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.838A>C
  hgvsp: ENSP00000441409.1:p.Lys280Gln
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys280Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-122845675-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845675
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845675
    reference: chr 12
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.836C>A
  hgvsp: ENSP00000351665.2:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.836C>A
  hgvsp: ENSP00000446379.1:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-62C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.836C>A
  hgvsp: ENSP00000439093.1:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.836C>A
  hgvsp: ENSP00000303585.7:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.836C>A
  hgvsp: ENSP00000355314.4:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.836C>A
  hgvsp: ENSP00000445531.1:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.836C>A
  hgvsp: ENSP00000437786.1:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.836C>A
  hgvsp: ENSP00000441409.1:p.Thr279Asn
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr279Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

12-122845676-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845676
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845676
    reference: chr 12
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.835A>T
  hgvsp: ENSP00000437786.1:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.835A>T
  hgvsp: ENSP00000351665.2:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.835A>T
  hgvsp: ENSP00000439093.1:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.835A>T
  hgvsp: ENSP00000446379.1:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.835A>T
  hgvsp: ENSP00000303585.7:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-63A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.835A>T
  hgvsp: ENSP00000441409.1:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.835A>T
  hgvsp: ENSP00000445531.1:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.835A>T
  hgvsp: ENSP00000355314.4:p.Thr279Ser
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr279Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

12-122845678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845678
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845678
    reference: chr 12
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.833T>C
  hgvsp: ENSP00000303585.7:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.833T>C
  hgvsp: ENSP00000355314.4:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.833T>C
  hgvsp: ENSP00000441409.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-65T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.833T>C
  hgvsp: ENSP00000437786.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.833T>C
  hgvsp: ENSP00000351665.2:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.833T>C
  hgvsp: ENSP00000446379.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.833T>C
  hgvsp: ENSP00000439093.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.833T>C
  hgvsp: ENSP00000445531.1:p.Val278Ala
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val278Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-122845678-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845678
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845678
    reference: chr 12
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.833T>A
  hgvsp: ENSP00000303585.7:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.833T>A
  hgvsp: ENSP00000351665.2:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.833T>A
  hgvsp: ENSP00000446379.1:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.833T>A
  hgvsp: ENSP00000437786.1:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.833T>A
  hgvsp: ENSP00000445531.1:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.833T>A
  hgvsp: ENSP00000439093.1:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-65T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.833T>A
  hgvsp: ENSP00000355314.4:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.833T>A
  hgvsp: ENSP00000441409.1:p.Val278Asp
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val278Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum

12-122845678-ACTTTGTGGACAGGAGCGAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845678
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845658
    reference: chr 12
allele count: 2
allele frequency: 1.651582215762701e-5
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsp: ENSP00000446379.1:p.Leu271PhefsTer102
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsp: ENSP00000355314.4:p.Leu271PhefsTer61
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsp: ENSP00000439093.1:p.Leu271PhefsTer61
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsp: ENSP00000445531.1:p.Leu271PhefsTer61
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsp: ENSP00000303585.7:p.Leu271PhefsTer61
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsp: ENSP00000437786.1:p.Leu271PhefsTer78
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsp: ENSP00000351665.2:p.Leu271PhefsTer61
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsp: ENSP00000441409.1:p.Leu271PhefsTer78
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu271PhefsTer61
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: ACTTTGTGGACAGGAGCGAAC
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

12-122845679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845679
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845679
    reference: chr 12
allele count: 11
allele frequency: 9.177220470207405e-5
allele num: 119862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.832G>A
  hgvsp: ENSP00000441409.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-66G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.832G>A
  hgvsp: ENSP00000437786.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.832G>A
  hgvsp: ENSP00000439093.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.832G>A
  hgvsp: ENSP00000445531.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.832G>A
  hgvsp: ENSP00000355314.4:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.832G>A
  hgvsp: ENSP00000351665.2:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.832G>A
  hgvsp: ENSP00000303585.7:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.832G>A
  hgvsp: ENSP00000446379.1:p.Val278Ile
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val278Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

12-122845682-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845682
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845682
    reference: chr 12
allele count: 3
allele frequency: 2.476882430647292e-5
allele num: 121120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.829A>C
  hgvsp: ENSP00000445531.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.829A>C
  hgvsp: ENSP00000303585.7:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.829A>C
  hgvsp: ENSP00000441409.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.829A>C
  hgvsp: ENSP00000351665.2:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.829A>C
  hgvsp: ENSP00000446379.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.829A>C
  hgvsp: ENSP00000355314.4:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-69A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.829A>C
  hgvsp: ENSP00000437786.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.829A>C
  hgvsp: ENSP00000439093.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys277Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

12-122845684-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845684
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845684
    reference: chr 12
allele count: 1
allele frequency: 8.341118377152009e-6
allele num: 119888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.827A>T
  hgvsp: ENSP00000351665.2:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.827A>T
  hgvsp: ENSP00000446379.1:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.827A>T
  hgvsp: ENSP00000439093.1:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.827A>T
  hgvsp: ENSP00000355314.4:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.827A>T
  hgvsp: ENSP00000441409.1:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.827A>T
  hgvsp: ENSP00000437786.1:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.827A>T
  hgvsp: ENSP00000445531.1:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.827A>T
  hgvsp: ENSP00000303585.7:p.His276Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-71A>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His276Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-122845684-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845684
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845684
    reference: chr 12
allele count: 76
allele frequency: 6.339249966635527e-4
allele num: 119888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.827A>C
  hgvsp: ENSP00000446379.1:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.827A>C
  hgvsp: ENSP00000441409.1:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-71A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.827A>C
  hgvsp: ENSP00000303585.7:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.827A>C
  hgvsp: ENSP00000355314.4:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.827A>C
  hgvsp: ENSP00000351665.2:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.827A>C
  hgvsp: ENSP00000445531.1:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.827A>C
  hgvsp: ENSP00000437786.1:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.827A>C
  hgvsp: ENSP00000439093.1:p.His276Pro
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 39165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His276Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

12-122845685-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845685
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845685
    reference: chr 12
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.826C>A
  hgvsp: ENSP00000445531.1:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.826C>A
  hgvsp: ENSP00000439093.1:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.826C>A
  hgvsp: ENSP00000303585.7:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.826C>A
  hgvsp: ENSP00000446379.1:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.826C>A
  hgvsp: ENSP00000355314.4:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-72C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.826C>A
  hgvsp: ENSP00000351665.2:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.826C>A
  hgvsp: ENSP00000441409.1:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.826C>A
  hgvsp: ENSP00000437786.1:p.His276Asn
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His276Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-122845686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845686
    reference: chr 12
allele count: 10
allele frequency: 8.250280509537324e-5
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.825C>T
  hgvsp: ENST00000358808.2:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.825C>T
  hgvsp: ENST00000537178.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.825C>T
  hgvsp: ENST00000540338.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.825C>T
  hgvsp: ENST00000537004.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.825C>T
  hgvsp: ENST00000302528.7:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.825C>T
  hgvsp: ENST00000541108.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.825C>T
  hgvsp: ENST00000361654.4:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.825C>T
  hgvsp: ENST00000540304.1:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val275Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

12-122845686-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845686
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845686
    reference: chr 12
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.825C>G
  hgvsp: ENST00000537004.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.825C>G
  hgvsp: ENST00000540338.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.825C>G
  hgvsp: ENST00000358808.2:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.825C>G
  hgvsp: ENST00000361654.4:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.825C>G
  hgvsp: ENST00000302528.7:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.825C>G
  hgvsp: ENST00000540304.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.825C>G
  hgvsp: ENST00000541108.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-73C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.825C>G
  hgvsp: ENST00000537178.1:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val275Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/12-122845687-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845687
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845687
    reference: chr 12
allele count: 3
allele frequency: 2.476800634060962e-5
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.824T>G
  hgvsp: ENSP00000446379.1:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-74T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.824T>G
  hgvsp: ENSP00000445531.1:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.824T>G
  hgvsp: ENSP00000355314.4:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.824T>G
  hgvsp: ENSP00000439093.1:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.824T>G
  hgvsp: ENSP00000437786.1:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.824T>G
  hgvsp: ENSP00000441409.1:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.824T>G
  hgvsp: ENSP00000303585.7:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.824T>G
  hgvsp: ENSP00000351665.2:p.Val275Gly
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val275Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

12-122845687-ACAGGAGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845687
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845680
    reference: chr 12
allele count: 4
allele frequency: 3.302400845414616e-5
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.817_823delGCTCCTG
  hgvsp: ENSP00000351665.2:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.817_823delGCTCCTG
  hgvsp: ENSP00000355314.4:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.817_823delGCTCCTG
  hgvsp: ENSP00000303585.7:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.817_823delGCTCCTG
  hgvsp: ENSP00000439093.1:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-81_-75delGCTCCTG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.817_823delGCTCCTG
  hgvsp: ENSP00000441409.1:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.817_823delGCTCCTG
  hgvsp: ENSP00000445531.1:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.817_823delGCTCCTG
  hgvsp: ENSP00000446379.1:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.817_823delGCTCCTG
  hgvsp: ENSP00000437786.1:p.Ala273SerfsTer22
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala273SerfsTer22
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: ACAGGAGC
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-122845687-ACAGGAGCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845687
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845679
    reference: chr 12
allele count: 2
allele frequency: 1.651200422707308e-5
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816_823delCGCTCCTG
  hgvsp: ENSP00000441409.1:p.Ala273ProfsTer80
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816_823delCGCTCCTG
  hgvsp: ENSP00000445531.1:p.Ala273ProfsTer63
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816_823delCGCTCCTG
  hgvsp: ENSP00000303585.7:p.Ala273ProfsTer63
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816_823delCGCTCCTG
  hgvsp: ENSP00000439093.1:p.Ala273ProfsTer63
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82_-75delCGCTCCTG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816_823delCGCTCCTG
  hgvsp: ENSP00000437786.1:p.Ala273ProfsTer80
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816_823delCGCTCCTG
  hgvsp: ENSP00000446379.1:p.Ala273ProfsTer104
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816_823delCGCTCCTG
  hgvsp: ENSP00000351665.2:p.Ala273ProfsTer63
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816_823delCGCTCCTG
  hgvsp: ENSP00000355314.4:p.Ala273ProfsTer63
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala273ProfsTer63
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: ACAGGAGCG
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/12-122845688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
allele count: 68
allele frequency: 5.63520344741858e-4
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.823G>T
  hgvsp: ENSP00000439093.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.823G>T
  hgvsp: ENSP00000446379.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.823G>T
  hgvsp: ENSP00000303585.7:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-75G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.823G>T
  hgvsp: ENSP00000437786.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.823G>T
  hgvsp: ENSP00000355314.4:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.823G>T
  hgvsp: ENSP00000441409.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.823G>T
  hgvsp: ENSP00000351665.2:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.823G>T
  hgvsp: ENSP00000445531.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val275Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

12-122845688-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
allele count: 42
allele frequency: 3.480566835170299e-4
allele num: 120670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-75G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.823G>C
  hgvsp: ENSP00000445531.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.823G>C
  hgvsp: ENSP00000437786.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.823G>C
  hgvsp: ENSP00000351665.2:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.823G>C
  hgvsp: ENSP00000355314.4:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.823G>C
  hgvsp: ENSP00000303585.7:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.823G>C
  hgvsp: ENSP00000446379.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.823G>C
  hgvsp: ENSP00000439093.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.823G>C
  hgvsp: ENSP00000441409.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val275Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122845688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845688
    reference: chr 12
allele count: 2
allele frequency: 1.657412778652524e-5
allele num: 120670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.823G>A
  hgvsp: ENSP00000351665.2:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.823G>A
  hgvsp: ENSP00000303585.7:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.823G>A
  hgvsp: ENSP00000445531.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.823G>A
  hgvsp: ENSP00000437786.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.823G>A
  hgvsp: ENSP00000439093.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-75G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.823G>A
  hgvsp: ENSP00000355314.4:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.823G>A
  hgvsp: ENSP00000441409.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.823G>A
  hgvsp: ENSP00000446379.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val275Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-122845689-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-76T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.822T>G
  hgvsp: ENST00000361654.4:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.822T>G
  hgvsp: ENST00000302528.7:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.822T>G
  hgvsp: ENST00000358808.2:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.822T>G
  hgvsp: ENST00000540338.1:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.822T>G
  hgvsp: ENST00000537178.1:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.822T>G
  hgvsp: ENST00000540304.1:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.822T>G
  hgvsp: ENST00000537004.1:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.822T>G
  hgvsp: ENST00000541108.1:c.822T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40242
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro274Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

12-122845689-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
allele count: 11
allele frequency: 9.084152283425551e-5
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.822T>C
  hgvsp: ENST00000540304.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.822T>C
  hgvsp: ENST00000537004.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.822T>C
  hgvsp: ENST00000537178.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.822T>C
  hgvsp: ENST00000541108.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-76T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.822T>C
  hgvsp: ENST00000358808.2:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.822T>C
  hgvsp: ENST00000540338.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.822T>C
  hgvsp: ENST00000361654.4:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.822T>C
  hgvsp: ENST00000302528.7:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro274Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

12-122845689-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
allele count: 2
allele frequency: 1.651664051531918e-5
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.822T>A
  hgvsp: ENST00000537178.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.822T>A
  hgvsp: ENST00000358808.2:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-76T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.822T>A
  hgvsp: ENST00000537004.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.822T>A
  hgvsp: ENST00000541108.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.822T>A
  hgvsp: ENST00000540338.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.822T>A
  hgvsp: ENST00000302528.7:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.822T>A
  hgvsp: ENST00000540304.1:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.822T>A
  hgvsp: ENST00000361654.4:c.822T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro274Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

12-122845689-AGGAGCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845689
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845683
    reference: chr 12
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816_821delCGCTCC
  hgvsp: ENSP00000445531.1:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816_821delCGCTCC
  hgvsp: ENSP00000351665.2:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816_821delCGCTCC
  hgvsp: ENSP00000441409.1:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816_821delCGCTCC
  hgvsp: ENSP00000446379.1:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816_821delCGCTCC
  hgvsp: ENSP00000355314.4:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816_821delCGCTCC
  hgvsp: ENSP00000439093.1:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816_821delCGCTCC
  hgvsp: ENSP00000303585.7:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816_821delCGCTCC
  hgvsp: ENSP00000437786.1:p.Ala273_Pro274del
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82_-77delCGCTCC
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala273_Pro274del
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: AGGAGCG
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122845690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845690
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845690
    reference: chr 12
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.821C>T
  hgvsp: ENSP00000445531.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.821C>T
  hgvsp: ENSP00000303585.7:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.821C>T
  hgvsp: ENSP00000441409.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.821C>T
  hgvsp: ENSP00000446379.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.821C>T
  hgvsp: ENSP00000437786.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.821C>T
  hgvsp: ENSP00000439093.1:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-77C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.821C>T
  hgvsp: ENSP00000355314.4:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.821C>T
  hgvsp: ENSP00000351665.2:p.Pro274Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro274Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

12-122845690-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845690
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845690
    reference: chr 12
allele count: 2
allele frequency: 1.651200422707308e-5
allele num: 121124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.821C>A
  hgvsp: ENSP00000355314.4:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.821C>A
  hgvsp: ENSP00000441409.1:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-77C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.821C>A
  hgvsp: ENSP00000303585.7:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.821C>A
  hgvsp: ENSP00000445531.1:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.821C>A
  hgvsp: ENSP00000446379.1:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.821C>A
  hgvsp: ENSP00000351665.2:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.821C>A
  hgvsp: ENSP00000439093.1:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.821C>A
  hgvsp: ENSP00000437786.1:p.Pro274His
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Pro274His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

12-122845691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
allele count: 25
allele frequency: 2.06614985371659e-4
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.820C>T
  hgvsp: ENSP00000351665.2:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.820C>T
  hgvsp: ENSP00000355314.4:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.820C>T
  hgvsp: ENSP00000441409.1:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-78C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.820C>T
  hgvsp: ENSP00000445531.1:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.820C>T
  hgvsp: ENSP00000303585.7:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.820C>T
  hgvsp: ENSP00000446379.1:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.820C>T
  hgvsp: ENSP00000437786.1:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.820C>T
  hgvsp: ENSP00000439093.1:p.Pro274Ser
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro274Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

12-122845691-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
allele count: 4
allele frequency: 3.305839765946544e-5
allele num: 120998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.820C>G
  hgvsp: ENSP00000351665.2:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-78C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.820C>G
  hgvsp: ENSP00000355314.4:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.820C>G
  hgvsp: ENSP00000446379.1:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.820C>G
  hgvsp: ENSP00000445531.1:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.820C>G
  hgvsp: ENSP00000437786.1:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.820C>G
  hgvsp: ENSP00000439093.1:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.820C>G
  hgvsp: ENSP00000303585.7:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.820C>G
  hgvsp: ENSP00000441409.1:p.Pro274Ala
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro274Ala
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

12-122845691-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845691
    reference: chr 12
allele count: 3
allele frequency: 2.479379824459908e-5
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.820C>A
  hgvsp: ENSP00000441409.1:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.820C>A
  hgvsp: ENSP00000303585.7:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.820C>A
  hgvsp: ENSP00000351665.2:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.820C>A
  hgvsp: ENSP00000355314.4:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.820C>A
  hgvsp: ENSP00000439093.1:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-78C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.820C>A
  hgvsp: ENSP00000446379.1:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.820C>A
  hgvsp: ENSP00000445531.1:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.820C>A
  hgvsp: ENSP00000437786.1:p.Pro274Thr
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro274Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/12-122845692-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.819T>G
  hgvsp: ENST00000361654.4:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.819T>G
  hgvsp: ENST00000358808.2:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.819T>G
  hgvsp: ENST00000537178.1:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-79T>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.819T>G
  hgvsp: ENST00000302528.7:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.819T>G
  hgvsp: ENST00000541108.1:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.819T>G
  hgvsp: ENST00000540338.1:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.819T>G
  hgvsp: ENST00000540304.1:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.819T>G
  hgvsp: ENST00000537004.1:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala273Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-122845692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
allele count: 37
allele frequency: 3.063624018812307e-4
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.819T>C
  hgvsp: ENST00000540304.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.819T>C
  hgvsp: ENST00000358808.2:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.819T>C
  hgvsp: ENST00000361654.4:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.819T>C
  hgvsp: ENST00000537004.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.819T>C
  hgvsp: ENST00000302528.7:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.819T>C
  hgvsp: ENST00000541108.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-79T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.819T>C
  hgvsp: ENST00000537178.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.819T>C
  hgvsp: ENST00000540338.1:c.819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala273Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

12-122845692-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.819T>A
  hgvsp: ENST00000540338.1:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.819T>A
  hgvsp: ENST00000540304.1:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.819T>A
  hgvsp: ENST00000537178.1:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.819T>A
  hgvsp: ENST00000358808.2:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-79T>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.819T>A
  hgvsp: ENST00000302528.7:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.819T>A
  hgvsp: ENST00000541108.1:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.819T>A
  hgvsp: ENST00000361654.4:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.819T>A
  hgvsp: ENST00000537004.1:c.819T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala273Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

12-122845693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
allele count: 31
allele frequency: 2.587559680811993e-4
allele num: 119804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.818C>T
  hgvsp: ENSP00000351665.2:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.818C>T
  hgvsp: ENSP00000355314.4:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.818C>T
  hgvsp: ENSP00000303585.7:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.818C>T
  hgvsp: ENSP00000441409.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.818C>T
  hgvsp: ENSP00000437786.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.818C>T
  hgvsp: ENSP00000439093.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-80C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.818C>T
  hgvsp: ENSP00000446379.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.818C>T
  hgvsp: ENSP00000445531.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38507
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Ala273Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

12-122845693-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
allele count: 17
allele frequency: 1.418984341090448e-4
allele num: 119804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.818C>G
  hgvsp: ENSP00000446379.1:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.818C>G
  hgvsp: ENSP00000441409.1:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.818C>G
  hgvsp: ENSP00000437786.1:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.818C>G
  hgvsp: ENSP00000439093.1:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.818C>G
  hgvsp: ENSP00000355314.4:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-80C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.818C>G
  hgvsp: ENSP00000303585.7:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.818C>G
  hgvsp: ENSP00000351665.2:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.818C>G
  hgvsp: ENSP00000445531.1:p.Ala273Gly
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Ala273Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122845693-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
allele count: 15
allele frequency: 1.252045006844513e-4
allele num: 119804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.818C>A
  hgvsp: ENSP00000446379.1:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.818C>A
  hgvsp: ENSP00000437786.1:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.818C>A
  hgvsp: ENSP00000441409.1:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-80C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.818C>A
  hgvsp: ENSP00000303585.7:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.818C>A
  hgvsp: ENSP00000445531.1:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.818C>A
  hgvsp: ENSP00000351665.2:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.818C>A
  hgvsp: ENSP00000439093.1:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.818C>A
  hgvsp: ENSP00000355314.4:p.Ala273Asp
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala273Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

12-122845693-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845693
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
allele count: 2
allele frequency: 1.66939334245935e-5
allele num: 119804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.817delG
  hgvsp: ENSP00000446379.1:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-81delG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.817delG
  hgvsp: ENSP00000441409.1:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.817delG
  hgvsp: ENSP00000437786.1:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.817delG
  hgvsp: ENSP00000303585.7:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.817delG
  hgvsp: ENSP00000351665.2:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.817delG
  hgvsp: ENSP00000445531.1:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.817delG
  hgvsp: ENSP00000355314.4:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.817delG
  hgvsp: ENSP00000439093.1:p.Ala273LeufsTer24
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 38507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala273LeufsTer24
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-122845694-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
allele count: 409
allele frequency: 3.529269639652078e-3
allele num: 115888
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 37100
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5921
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36944
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 38
  allele frequency: 3.899835796387521e-3
  allele num: 9744
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 47
  allele frequency: 5.581947743467933e-3
  allele num: 8420
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 50
  allele frequency: 3.074652564260239e-3
  allele num: 16262
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 53
  allele frequency: 4.646677187445204e-3
  allele num: 11406
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-122845694-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
allele count: 207
allele frequency: 1.786207372635648e-3
allele num: 115888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.817G>C
  hgvsp: ENSP00000351665.2:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.817G>C
  hgvsp: ENSP00000439093.1:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.817G>C
  hgvsp: ENSP00000445531.1:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.817G>C
  hgvsp: ENSP00000441409.1:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.817G>C
  hgvsp: ENSP00000355314.4:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.817G>C
  hgvsp: ENSP00000446379.1:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-81G>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.817G>C
  hgvsp: ENSP00000303585.7:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.817G>C
  hgvsp: ENSP00000437786.1:p.Ala273Pro
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 37100
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala273Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/12-122845694-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
allele count: 1
allele frequency: 8.62902112384371e-6
allele num: 115888
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816_817insT
  hgvsp: ENSP00000439093.1:p.Ala273CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82_-81insT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816_817insT
  hgvsp: ENSP00000446379.1:p.Ala273CysfsTer107
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816_817insT
  hgvsp: ENSP00000437786.1:p.Ala273CysfsTer83
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816_817insT
  hgvsp: ENSP00000303585.7:p.Ala273CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816_817insT
  hgvsp: ENSP00000355314.4:p.Ala273CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816_817insT
  hgvsp: ENSP00000441409.1:p.Ala273CysfsTer83
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816_817insT
  hgvsp: ENSP00000445531.1:p.Ala273CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816_817insT
  hgvsp: ENSP00000351665.2:p.Ala273CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala273CysfsTer66
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

12-122845694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
allele count: 13
allele frequency: 1.121772746099682e-4
allele num: 115888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.817G>A
  hgvsp: ENSP00000437786.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.817G>A
  hgvsp: ENSP00000446379.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.817G>A
  hgvsp: ENSP00000445531.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.817G>A
  hgvsp: ENSP00000439093.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.817G>A
  hgvsp: ENSP00000351665.2:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.817G>A
  hgvsp: ENSP00000441409.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.817G>A
  hgvsp: ENSP00000355314.4:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-81G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.817G>A
  hgvsp: ENSP00000303585.7:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala273Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

12-122845694-CGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845694
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845692
    reference: chr 12
allele count: 2
allele frequency: 1.725804224768742e-5
allele num: 115888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-83_-82delTC
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.815_816delTC
  hgvsp: ENSP00000439093.1:p.Phe272CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.815_816delTC
  hgvsp: ENSP00000437786.1:p.Phe272CysfsTer83
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.815_816delTC
  hgvsp: ENSP00000351665.2:p.Phe272CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.815_816delTC
  hgvsp: ENSP00000355314.4:p.Phe272CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.815_816delTC
  hgvsp: ENSP00000441409.1:p.Phe272CysfsTer83
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.815_816delTC
  hgvsp: ENSP00000446379.1:p.Phe272CysfsTer107
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.815_816delTC
  hgvsp: ENSP00000303585.7:p.Phe272CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.815_816delTC
  hgvsp: ENSP00000445531.1:p.Phe272CysfsTer66
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe272CysfsTer66
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: CGA
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

12-122845695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
allele count: 17544
allele frequency: 2.184208560543811e-1
allele num: 80322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816C>T
  hgvsp: ENST00000540304.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816C>T
  hgvsp: ENST00000537004.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816C>T
  hgvsp: ENST00000541108.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816C>T
  hgvsp: ENST00000302528.7:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816C>T
  hgvsp: ENST00000361654.4:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816C>T
  hgvsp: ENST00000540338.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816C>T
  hgvsp: ENST00000358808.2:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816C>T
  hgvsp: ENST00000537178.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.25e1
  variant carriers: 1380
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 1689
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.25e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 6.25e1
  variant carriers: 1781
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.75e1
  variant carriers: 1540
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 4.25e1
  variant carriers: 1142
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 5.25e1
  variant carriers: 1869
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 6.75e1
  variant carriers: 1569
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 8.25e1
  variant carriers: 846
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 795
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 5.75e1
  variant carriers: 1867
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 1059
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.25e1
  variant carriers: 523
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 17181
  bin: 9.75e1
  variant carriers: 16267
genotype quality: GenotypeQuality
  all individuals: 17892
  bin: 2.5e0
  variant carriers: 88
hgvs: p.Phe272Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

12-122845695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
allele count: 9
allele frequency: 1.120490027638754e-4
allele num: 80322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816C>G
  hgvsp: ENSP00000437786.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816C>G
  hgvsp: ENSP00000439093.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816C>G
  hgvsp: ENSP00000303585.7:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816C>G
  hgvsp: ENSP00000446379.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816C>G
  hgvsp: ENSP00000441409.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816C>G
  hgvsp: ENSP00000445531.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816C>G
  hgvsp: ENSP00000351665.2:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82C>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816C>G
  hgvsp: ENSP00000355314.4:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe272Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-122845695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845695
    reference: chr 12
allele count: 2
allele frequency: 2.489977839197231e-5
allele num: 80322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.816C>A
  hgvsp: ENSP00000437786.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.816C>A
  hgvsp: ENSP00000445531.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-82C>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.816C>A
  hgvsp: ENSP00000446379.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.816C>A
  hgvsp: ENSP00000303585.7:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.816C>A
  hgvsp: ENSP00000351665.2:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.816C>A
  hgvsp: ENSP00000439093.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.816C>A
  hgvsp: ENSP00000441409.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.816C>A
  hgvsp: ENSP00000355314.4:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17181
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe272Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

12-122845697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845697
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845697
    reference: chr 12
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.814T>C
  hgvsp: ENSP00000303585.7:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.814T>C
  hgvsp: ENSP00000446379.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.814T>C
  hgvsp: ENSP00000351665.2:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.814T>C
  hgvsp: ENSP00000355314.4:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.814T>C
  hgvsp: ENSP00000445531.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.814T>C
  hgvsp: ENSP00000439093.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.814T>C
  hgvsp: ENSP00000441409.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-84T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.814T>C
  hgvsp: ENSP00000437786.1:p.Phe272Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe272Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-122845697-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845697
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845696
    reference: chr 12
allele count: 5
allele frequency: 4.119566292060772e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.813delG
  hgvsp: ENSP00000441409.1:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.813delG
  hgvsp: ENSP00000351665.2:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.813delG
  hgvsp: ENSP00000439093.1:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.813delG
  hgvsp: ENSP00000437786.1:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-85delG
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.813delG
  hgvsp: ENSP00000303585.7:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.813delG
  hgvsp: ENSP00000445531.1:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.813delG
  hgvsp: ENSP00000355314.4:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.813delG
  hgvsp: ENSP00000446379.1:p.Leu271PhefsTer26
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41823
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu271PhefsTer26
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: AC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-122845698-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845698
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845698
    reference: chr 12
allele count: 26373
allele frequency: 3.730901991851516e-1
allele num: 70688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-85G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.813G>T
  hgvsp: ENSP00000441409.1:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.813G>T
  hgvsp: ENSP00000439093.1:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.813G>T
  hgvsp: ENSP00000351665.2:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.813G>T
  hgvsp: ENSP00000437786.1:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.813G>T
  hgvsp: ENSP00000355314.4:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.813G>T
  hgvsp: ENSP00000445531.1:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.813G>T
  hgvsp: ENSP00000446379.1:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.813G>T
  hgvsp: ENSP00000303585.7:p.Leu271Phe
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.25e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 7.75e1
  variant carriers: 1468
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 711
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 6.75e1
  variant carriers: 1093
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.25e1
  variant carriers: 1782
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 7.25e1
  variant carriers: 1278
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 2.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.25e1
  variant carriers: 1709
genotype depth: GenotypeDepth
  all individuals: 15558
  bin: 9.75e1
  variant carriers: 13186
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 1808
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 6.25e1
  variant carriers: 870
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 32
hgvs: p.Leu271Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-122845698-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845698
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845700
    reference: chr 12
allele count: 2
allele frequency: 2.829334540516071e-5
allele num: 70688
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.811_812dupTT
  hgvsp: ENSP00000446379.1:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.811_812dupTT
  hgvsp: ENSP00000437786.1:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.811_812dupTT
  hgvsp: ENSP00000351665.2:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.811_812dupTT
  hgvsp: ENSP00000445531.1:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.811_812dupTT
  hgvsp: ENSP00000303585.7:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-87_-86dupTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.811_812dupTT
  hgvsp: ENSP00000439093.1:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.811_812dupTT
  hgvsp: ENSP00000355314.4:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.811_812dupTT
  hgvsp: ENSP00000441409.1:p.Leu271PhefsTer27
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14911
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu271PhefsTer27
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

12-122845704-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845704
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845704
    reference: chr 12
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.807T>C
  hgvsp: ENST00000541108.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.807T>C
  hgvsp: ENST00000537178.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.807T>C
  hgvsp: ENST00000302528.7:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.807T>C
  hgvsp: ENST00000358808.2:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.807T>C
  hgvsp: ENST00000361654.4:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.807T>C
  hgvsp: ENST00000540338.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-91T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.807T>C
  hgvsp: ENST00000537004.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.807T>C
  hgvsp: ENST00000540304.1:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10773
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr269Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-122845711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845711
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845711
    reference: chr 12
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.800C>T
  hgvsp: ENSP00000439093.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.800C>T
  hgvsp: ENSP00000446379.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.800C>T
  hgvsp: ENSP00000351665.2:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.800C>T
  hgvsp: ENSP00000355314.4:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.800C>T
  hgvsp: ENSP00000303585.7:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.800C>T
  hgvsp: ENSP00000441409.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.800C>T
  hgvsp: ENSP00000437786.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-98C>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.800C>T
  hgvsp: ENSP00000445531.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro267Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

12-122845721-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845721
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845721
    reference: chr 12
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.790C>A
  hgvsp: ENSP00000355314.4:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.790C>A
  hgvsp: ENSP00000446379.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.790C>A
  hgvsp: ENSP00000445531.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.790C>A
  hgvsp: ENSP00000439093.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.790C>A
  hgvsp: ENSP00000437786.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.790C>A
  hgvsp: ENSP00000351665.2:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.790C>A
  hgvsp: ENSP00000303585.7:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.790C>A
  hgvsp: ENSP00000441409.1:p.Gln264Lys
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-108C>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln264Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

12-122845730-T-TTGTTCCAGCAACAGCGCCATCATTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845730
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845755
    reference: chr 12
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: TTGTTCCAGCAACAGCGCCATCATTC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19441
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-122845731-T-TGTTCCAGCAACAGCGCCATCATTCTTCCCAAGTGGCTCATCTAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845731
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845776
    reference: chr 12
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: TGTTCCAGCAACAGCGCCATCATTCTTCCCAAGTGGCTCATCTAAC
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-122845743-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845743
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845743
    reference: chr 12
allele count: 2
allele frequency: 1.681633202165944e-5
allele num: 118932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-15T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-15T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

12-122845748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845748
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845748
    reference: chr 12
allele count: 1
allele frequency: 8.436825053995681e-6
allele num: 118528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-20G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31251
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-122845749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845749
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845749
    reference: chr 12
allele count: 3
allele frequency: 2.53434031121699e-5
allele num: 118374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-21T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-21T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

12-122845750-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845750
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845750
    reference: chr 12
allele count: 1
allele frequency: 8.450513791238508e-6
allele num: 118336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-22T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-22T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14154
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-122848697-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122848697
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122848697
    reference: chr 12
allele count: 3
allele frequency: 2.494429108324741e-5
allele num: 120268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.658-43A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

12-122845751-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845751
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845751
    reference: chr 12
allele count: 5
allele frequency: 4.230118443316413e-5
allele num: 118200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-23A>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17644
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-122845754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845754
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845754
    reference: chr 12
allele count: 1
allele frequency: 8.488099684242691e-6
allele num: 117812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-26G>A
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29428
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-122845761-CAACTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845761
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845756
    reference: chr 12
allele count: 1
allele frequency: 8.543065593657628e-6
allele num: 117054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-38_-115-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-38_783-34delAAGTT
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: CAACTT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

12-122845763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845763
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845763
    reference: chr 12
allele count: 2
allele frequency: 1.712064921501823e-5
allele num: 116818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-35T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-35T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

12-122845765-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845765
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845765
    reference: chr 12
allele count: 1
allele frequency: 8.581628449814637e-6
allele num: 116528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-37A>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

12-122845769-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845769
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845769
    reference: chr 12
allele count: 1
allele frequency: 8.662058451570432e-6
allele num: 115446
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-41A>G
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

12-122845771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122845771
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122845771
    reference: chr 12
allele count: 1
allele frequency: 8.693384334521429e-6
allele num: 115030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-115-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.783-43T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-122848480-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122848480
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122848480
    reference: chr 12
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-116+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.782+50G>T
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

12-122848481-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122848481
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 122848481
    reference: chr 12
allele count: 4
allele frequency: 3.315430011272462e-5
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000437786
  ensembl transcript: ENST00000540304
  gene symbol: CLIP1
  hgvsc: ENST00000540304.1:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000445531
  ensembl transcript: ENST00000537178
  gene symbol: CLIP1
  hgvsc: ENST00000537178.1:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000446379
  ensembl transcript: ENST00000541108
  gene symbol: CLIP1
  hgvsc: ENST00000541108.1:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000439093
  ensembl transcript: ENST00000540338
  gene symbol: CLIP1
  hgvsc: ENST00000540338.1:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000441409
  ensembl transcript: ENST00000537004
  gene symbol: CLIP1
  hgvsc: ENST00000537004.1:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000438743
  ensembl transcript: ENST00000545889
  gene symbol: CLIP1
  hgvsc: ENST00000545889.1:c.-116+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000351665
  ensembl transcript: ENST00000358808
  gene symbol: CLIP1
  hgvsc: ENST00000358808.2:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000355314
  ensembl transcript: ENST00000361654
  gene symbol: CLIP1
  hgvsc: ENST00000361654.4:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130779
  ensembl protein: ENSP00000303585
  ensembl transcript: ENST00000302528
  gene symbol: CLIP1
  hgvsc: ENST00000302528.7:c.782+49T>C
  variant of: http://identifiers.org/hgnc/10461
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20931
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.58e-1

DP
type: SiteQuality
SIO_000300: 1.483625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.164e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 710
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.570399999999999e1

QD
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 1.485259e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.204000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.86e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

QD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQ
type: SiteQuality
SIO_000300: 5.86e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

FS
type: SiteQuality
SIO_000300: 8.570399999999999e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.485259e6

VQSLOD
type: SiteQuality
SIO_000300: -8.204000000000001e0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.812e1

DP
type: SiteQuality
SIO_000300: 1.491022e6

QD
type: SiteQuality
SIO_000300: 5.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.488857e6

BaseQRankSum
type: SiteQuality
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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SIO_000300: -3.507e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.798e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
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SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

FS
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.658e0

VQSLOD
type: SiteQuality
SIO_000300: -1.918e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.32e-1

DP
type: SiteQuality
SIO_000300: 1.488431e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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allele num: 11566
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Other
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South Asian
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East Asian
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African
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FS
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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South Asian
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DP
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.50220608097968e-5
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.701e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: -2.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.501076e6

QD
type: SiteQuality
SIO_000300: 5.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 342
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 387
bin: 3.75e1
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GenotypeQuality
all individuals: 1157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.911e1

DP
type: SiteQuality
SIO_000300: 1.520765e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

FS
type: SiteQuality
SIO_000300: 4.2292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.307e0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 41667
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 8
allele frequency: 6.919218128351496e-4
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.177489829742353e-4
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.784359093012494e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.85579332947754e-4
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.250446588067167e-3
allele num: 5598
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.682867557715674e-4
allele num: 16460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.519e0

FS
type: SiteQuality
SIO_000300: 4.2292e1

DP
type: SiteQuality
SIO_000300: 1.520765e6

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.307e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

QD
type: SiteQuality
SIO_000300: 1.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 816
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variant carriers: 0

GenotypeQuality
all individuals: 505
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 191
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.304e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.807e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

DP
type: SiteQuality
SIO_000300: 1.508233e6

VQSLOD
type: SiteQuality
SIO_000300: -2.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6735
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 2762
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 1

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 807
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2389
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 41235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.031221582297666e-4
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502746675472038e-5
allele num: 66626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.2139e1

VQSLOD
type: SiteQuality
SIO_000300: -5.659e0

MQRankSum
type: SiteQuality
SIO_000300: -1.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 1.953e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

DP
type: SiteQuality
SIO_000300: 1.508137e6

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 6735
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variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 1517
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variant carriers: 1

GenotypeQuality
all individuals: 496
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GenotypeQuality
all individuals: 2389
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.508137e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.953e1

MQRankSum
type: SiteQuality
SIO_000300: -1.319e0

VQSLOD
type: SiteQuality
SIO_000300: -5.659e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

FS
type: SiteQuality
SIO_000300: 3.2139e1

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 2374
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 2758
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GenotypeQuality
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GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 365
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GenotypeQuality
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GenotypeQuality
all individuals: 1526
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 1.509015e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 9.1238e1

QD
type: SiteQuality
SIO_000300: 1.785e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
all individuals: 2758
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1526
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 577
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 812
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2374
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GenotypeQuality
all individuals: 1883
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 9.1238e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

VQSLOD
type: SiteQuality
SIO_000300: -6.987e0

QD
type: SiteQuality
SIO_000300: 1.785e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 1.509015e6

GenotypeQuality
all individuals: 40230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
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GenotypeQuality
all individuals: 529
bin: 2.25e1
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GenotypeQuality
all individuals: 812
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GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 419
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GenotypeQuality
all individuals: 466
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GenotypeQuality
all individuals: 1526
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 8.25e1
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GenotypeQuality
all individuals: 761
bin: 8.75e1
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GenotypeQuality
all individuals: 2758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
SIO_000300: 1.509015e6

FS
type: SiteQuality
SIO_000300: 9.1238e1

VQSLOD
type: SiteQuality
SIO_000300: -6.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 1.785e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 40099
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 1

South Asian
type: Population
allele count: 10
allele frequency: 6.075334143377885e-4
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.594896331738437e-4
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.950880444856349e-4
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 5.712224159701762e-4
allele num: 66524
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.658008658008658e-4
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 1.512546e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

FS
type: SiteQuality
SIO_000300: 4.9521e1

VQSLOD
type: SiteQuality
SIO_000300: -1.234e1

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 441
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 742
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 608
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.25273390036452e-4
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.379585326953748e-4
allele num: 6270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.856112079850881e-4
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.042632066728452e-3
allele num: 8632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

FS
type: SiteQuality
SIO_000300: 4.9521e1

VQSLOD
type: SiteQuality
SIO_000300: -1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
SIO_000300: 1.512546e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
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variant carriers: 0

GenotypeQuality
all individuals: 608
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2348
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variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 691
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variant carriers: 0

GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.459e1

DP
type: SiteQuality
SIO_000300: 1.512546e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.234e1

FS
type: SiteQuality
SIO_000300: 4.9521e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e0

GenotypeQuality
all individuals: 658
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.035e1

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 1.51194e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 582
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 40242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
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variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 2.25e1
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GenotypeQuality
all individuals: 1473
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201345506967804e-4
allele num: 66592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

DP
type: SiteQuality
SIO_000300: 1.51194e6

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
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GenotypeQuality
all individuals: 40242
bin: 6.25e1
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GenotypeQuality
all individuals: 1473
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 2791
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variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.51194e6

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.035e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 801
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 582
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GenotypeQuality
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GenotypeQuality
all individuals: 547
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 776
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GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.51194e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.035e1

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 806
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variant carriers: 0

GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
all individuals: 1895
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GenotypeQuality
all individuals: 234
bin: 5.25e1
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GenotypeQuality
all individuals: 784
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GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
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GenotypeQuality
all individuals: 2795
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variant carriers: 0

GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 40506
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GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 645
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 1490
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GenotypeQuality
all individuals: 6628
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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SIO_000300: 1.906e1

MQRankSum
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SIO_000300: -3.52e-1

BaseQRankSum
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SIO_000300: -1.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
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SIO_000300: 1.511935e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.002642325246217e-5
allele num: 66608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
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African
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -2.08e-1

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -2.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 1.159285879897983e-4
allele num: 8626
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South Asian
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allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.912621359223301e-4
allele num: 10300
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European (Non-Finnish)
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allele count: 14
allele frequency: 2.103555007963458e-4
allele num: 66554
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.553734061930783e-4
allele num: 6588
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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SIO_000300: 2.7e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.507617874207411e-5
allele num: 66554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
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DP
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QD
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ClippingRankSum
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SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -1.76e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
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Other
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South Asian
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European (Non-Finnish)
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allele num: 66456
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 16
allele frequency: 2.407608041410858e-4
allele num: 66456
num of homozygotes: 0

Latino
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allele frequency: 6.069013351829374e-4
allele num: 11534
num of homozygotes: 0

South Asian
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allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.09942055504727e-4
allele num: 6558
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East Asian
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African
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allele frequency: 4.879000780640125e-4
allele num: 10248
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Other
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FS
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8570
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.669854570847375e-4
allele num: 65874
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South Asian
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African
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allele frequency: 6.89383494189482e-4
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Latino
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allele frequency: 4.338018393197987e-4
allele num: 11526
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 4.2704e1

DP
type: SiteQuality
SIO_000300: 1.523664e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

QD
type: SiteQuality
SIO_000300: 2.566e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

GenotypeQuality
all individuals: 762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39051
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333722287047841e-4
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821936110773715e-4
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.366244648875125e-4
allele num: 65874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

FS
type: SiteQuality
SIO_000300: 4.2704e1

VQSLOD
type: SiteQuality
SIO_000300: -2.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

QD
type: SiteQuality
SIO_000300: 2.566e1

DP
type: SiteQuality
SIO_000300: 1.523664e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 9.75e1
variant carriers: 13

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.51804960986125e-4
allele num: 65874
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

QD
type: SiteQuality
SIO_000300: 2.566e1

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 4.2704e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.226e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.523664e6

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39051
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variant carriers: 0

GenotypeQuality
all individuals: 2348
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variant carriers: 0

GenotypeQuality
all individuals: 2736
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.687e0

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 2.566e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: -2.226e0

FS
type: SiteQuality
SIO_000300: 4.2704e1

DP
type: SiteQuality
SIO_000300: 1.523664e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

European (Non-Finnish)
type: Population
allele count: 190
allele frequency: 2.96875e-3
allele num: 64000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 5.138941758660068e-3
allele num: 5254
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.987531172069825e-3
allele num: 802
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.6233e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.667e1

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

DP
type: SiteQuality
SIO_000300: 1.567507e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

GenotypeQuality
all individuals: 678
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 612
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 845
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1741
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 863
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 193

GenotypeQuality
all individuals: 2151
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.854967643700038e-3
allele num: 5254
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.494061757719715e-3
allele num: 8420
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.609027179928669e-4
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.744663382594417e-3
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 109
allele frequency: 1.703125e-3
allele num: 64000
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.630194634402946e-3
allele num: 11406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.567507e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.667e1

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

FS
type: SiteQuality
SIO_000300: 5.6233e1

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64000
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 1.667e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

DP
type: SiteQuality
SIO_000300: 1.567507e6

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

FS
type: SiteQuality
SIO_000300: 5.6233e1

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 557
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.630194634402946e-4
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.375e-5
allele num: 64000
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.375296912114014e-4
allele num: 8420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 5.6233e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 1.667e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.567507e6

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 557
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.25e1
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GenotypeQuality
all individuals: 612
bin: 4.25e1
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GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.567507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 1.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

FS
type: SiteQuality
SIO_000300: 5.6233e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

GenotypeQuality
all individuals: 736
bin: 1.25e1
variant carriers: 126

GenotypeQuality
all individuals: 788
bin: 1.75e1
variant carriers: 116

GenotypeQuality
all individuals: 735
bin: 7.25e1
variant carriers: 76

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 86

GenotypeQuality
all individuals: 331
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GenotypeQuality
all individuals: 1830
bin: 6.75e1
variant carriers: 62

GenotypeQuality
all individuals: 322
bin: 8.75e1
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GenotypeQuality
all individuals: 862
bin: 3.25e1
variant carriers: 103

GenotypeQuality
all individuals: 795
bin: 7.5e0
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GenotypeQuality
all individuals: 12215
bin: 6.25e1
variant carriers: 90

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 62

GenotypeQuality
all individuals: 722
bin: 5.75e1
variant carriers: 85

GenotypeQuality
all individuals: 763
bin: 5.25e1
variant carriers: 76

GenotypeQuality
all individuals: 786
bin: 2.25e1
variant carriers: 86

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 69

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 102

Latino
type: Population
allele count: 2381
allele frequency: 3.527407407407407e-1
allele num: 6750
num of homozygotes: 0

Other
type: Population
allele count: 110
allele frequency: 2.044609665427509e-1
allele num: 538
num of homozygotes: 0

African
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allele count: 1473
allele frequency: 2.410801963993453e-1
allele num: 6110
num of homozygotes: 0

East Asian
type: Population
allele count: 2053
allele frequency: 3.467905405405405e-1
allele num: 5920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1167
allele frequency: 3.762088974854932e-1
allele num: 3102
num of homozygotes: 0

South Asian
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allele count: 1845
allele frequency: 1.831810961080222e-1
allele num: 10072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8515
allele frequency: 1.780263432991846e-1
allele num: 47830
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.939e0

ReadPosRankSum
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SIO_000300: -1.919e0

FS
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MQRankSum
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SIO_000300: -8.599999999999999e-2

VQSLOD
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ClippingRankSum
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SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

MQ
type: SiteQuality
SIO_000300: 5.882e1

DP
type: SiteQuality
SIO_000300: 2.907689e6

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.636661211129296e-4
allele num: 6110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.223726627981947e-4
allele num: 3102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.045369015262388e-4
allele num: 47830
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 3.378378378378379e-4
allele num: 5920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.68119e2

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.882e1

MQRankSum
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DP
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

ClippingRankSum
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SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.919e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.18147606104955e-5
allele num: 47830
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.68119e2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.919e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

DP
type: SiteQuality
SIO_000300: 2.907689e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.227e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.43541e2

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 4.461524e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.227e0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 4.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 1.43541e2

MQ
type: SiteQuality
SIO_000300: 5.891e1

DP
type: SiteQuality
SIO_000300: 4.461524e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

GenotypeQuality
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variant carriers: 47

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 3030
allele frequency: 4.684601113172542e-1
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13333
allele frequency: 3.119414159374854e-1
allele num: 42742
num of homozygotes: 0

East Asian
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allele count: 2837
allele frequency: 4.772880215343203e-1
allele num: 5944
num of homozygotes: 0

European (Finnish)
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allele count: 1491
allele frequency: 4.490963855421687e-1
allele num: 3320
num of homozygotes: 0

African
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allele count: 2224
allele frequency: 4.507498986623429e-1
allele num: 4934
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Latino
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allele count: 3285
allele frequency: 4.797021028037383e-1
allele num: 6848
num of homozygotes: 0

Other
type: Population
allele count: 173
allele frequency: 4.00462962962963e-1
allele num: 432
num of homozygotes: 0

BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.858e1

QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.546072974644403e-4
allele num: 6468
num of homozygotes: 0

African
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allele frequency: 2.026753141467369e-4
allele num: 4934
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
type: Population
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Other
type: Population
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African
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East Asian
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FS
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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African
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allele count: 0
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South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66618
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
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SIO_000300: 5.965e1

FS
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BaseQRankSum
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MQRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.3403499873193e-5
allele num: 15772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 5.751e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.906694e6

MQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8550
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
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allele frequency: 1.517312536036173e-5
allele num: 65906
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.556777446989489e-5
allele num: 65836
num of homozygotes: 0

East Asian
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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Other
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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FS
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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MQRankSum
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FS
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VQSLOD
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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FS
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 14292
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Other
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African
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65412
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East Asian
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.530643482520051e-5
allele num: 65332
num of homozygotes: 0

Latino
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allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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QD
type: SiteQuality
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DP
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Finnish)
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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Other
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African
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European (Non-Finnish)
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East Asian
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DP
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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Other
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ReadPosRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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QD
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InbreedingCoeff
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GenotypeQuality
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