http://identifiers.org/exac.variant/9-7049141-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049141
    reference: chr 9
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1426A>C
  hgvsp: ENSP00000405739.2:p.Asn476His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1600A>C
  hgvsp: ENSP00000409353.2:p.Asn534His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2365A>C
  hgvsp: ENSP00000370710.3:p.Asn789His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2224A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2365A>C
  hgvsp: ENSP00000370707.3:p.Asn789His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.397A>C
  hgvsp: ENSP00000400127.1:p.Asn133His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2365A>C
  hgvsp: ENSP00000445427.1:p.Asn789His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2431A>C
  hgvsp: ENSP00000442382.1:p.Asn811His
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6107
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn789His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

9-7049142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049142
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049142
    reference: chr 9
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2366A>G
  hgvsp: ENSP00000370707.3:p.Asn789Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2366A>G
  hgvsp: ENSP00000445427.1:p.Asn789Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1601A>G
  hgvsp: ENSP00000409353.2:p.Asn534Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.398A>G
  hgvsp: ENSP00000400127.1:p.Asn133Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2432A>G
  hgvsp: ENSP00000442382.1:p.Asn811Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2225A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2366A>G
  hgvsp: ENSP00000370710.3:p.Asn789Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1427A>G
  hgvsp: ENSP00000405739.2:p.Asn476Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn789Ser
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

9-7049148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049148
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049148
    reference: chr 9
allele count: 10
allele frequency: 8.263916435277006e-5
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2372C>T
  hgvsp: ENSP00000370710.3:p.Pro791Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.404C>T
  hgvsp: ENSP00000400127.1:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1607C>T
  hgvsp: ENSP00000409353.2:p.Pro536Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2438C>T
  hgvsp: ENSP00000442382.1:p.Pro813Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2372C>T
  hgvsp: ENSP00000370707.3:p.Pro791Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2231C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1433C>T
  hgvsp: ENSP00000405739.2:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2372C>T
  hgvsp: ENSP00000445427.1:p.Pro791Leu
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro791Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

9-7049149-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049149
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049149
    reference: chr 9
allele count: 4
allele frequency: 3.305348053149996e-5
allele num: 121016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1434A>G
  hgvsp: ENST00000428870.2:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.405A>G
  hgvsp: ENST00000420847.1:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2439A>G
  hgvsp: ENST00000535193.1:c.2439A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1608A>G
  hgvsp: ENST00000442236.2:c.1608A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2373A>G
  hgvsp: ENST00000381306.3:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2373A>G
  hgvsp: ENST00000381309.3:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2373A>G
  hgvsp: ENST00000543771.1:c.2373A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2232A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro791Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-7049152-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049152
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049152
    reference: chr 9
allele count: 2
allele frequency: 1.652974527662529e-5
allele num: 120994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.408A>C
  hgvsp: ENSP00000400127.1:p.Glu136Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2235A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2376A>C
  hgvsp: ENSP00000445427.1:p.Glu792Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1437A>C
  hgvsp: ENSP00000405739.2:p.Glu479Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2376A>C
  hgvsp: ENSP00000370707.3:p.Glu792Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1611A>C
  hgvsp: ENSP00000409353.2:p.Glu537Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2376A>C
  hgvsp: ENSP00000370710.3:p.Glu792Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2442A>C
  hgvsp: ENSP00000442382.1:p.Glu814Asp
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26632
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu792Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-7049158-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049158
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049158
    reference: chr 9
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1617A>T
  hgvsp: ENST00000442236.2:c.1617A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2382A>T
  hgvsp: ENST00000381306.3:c.2382A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2382A>T
  hgvsp: ENST00000381309.3:c.2382A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.414A>T
  hgvsp: ENST00000420847.1:c.414A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2241A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2448A>T
  hgvsp: ENST00000535193.1:c.2448A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1443A>T
  hgvsp: ENST00000428870.2:c.1443A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2382A>T
  hgvsp: ENST00000543771.1:c.2382A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr794Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

9-7049171-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049171
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049171
    reference: chr 9
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2395G>C
  hgvsp: ENSP00000445427.1:p.Gly799Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.427G>C
  hgvsp: ENSP00000400127.1:p.Gly143Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2254G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1630G>C
  hgvsp: ENSP00000409353.2:p.Gly544Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2395G>C
  hgvsp: ENSP00000370707.3:p.Gly799Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1456G>C
  hgvsp: ENSP00000405739.2:p.Gly486Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2395G>C
  hgvsp: ENSP00000370710.3:p.Gly799Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2461G>C
  hgvsp: ENSP00000442382.1:p.Gly821Arg
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly799Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

9-7049172-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049172
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049172
    reference: chr 9
allele count: 2
allele frequency: 1.656177542232527e-5
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2255G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1457G>T
  hgvsp: ENSP00000405739.2:p.Gly486Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1631G>T
  hgvsp: ENSP00000409353.2:p.Gly544Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2396G>T
  hgvsp: ENSP00000445427.1:p.Gly799Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2396G>T
  hgvsp: ENSP00000370710.3:p.Gly799Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2462G>T
  hgvsp: ENSP00000442382.1:p.Gly821Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.428G>T
  hgvsp: ENSP00000400127.1:p.Gly143Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2396G>T
  hgvsp: ENSP00000370707.3:p.Gly799Val
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly799Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-7049208-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049208
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049208
    reference: chr 9
allele count: 5
allele frequency: 4.447448943286131e-5
allele num: 112424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2291G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+8G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+8G>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22257
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2424+8G>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-7049208-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049208
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049207
    reference: chr 9
allele count: 1
allele frequency: 8.894897886572263e-6
allele num: 112424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2292delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+9delC
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+9delC
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GC
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-7049209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049209
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049209
    reference: chr 9
allele count: 1
allele frequency: 8.93415527561869e-6
allele num: 111930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2292C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+9C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+9C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/9-7049217-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049217
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049217
    reference: chr 9
allele count: 2
allele frequency: 1.868181138843222e-5
allele num: 107056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2300C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+17C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+17C>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

9-7049218-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049218
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049218
    reference: chr 9
allele count: 2
allele frequency: 1.869787966044651e-5
allele num: 106964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2301T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+18T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+18T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15555
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

9-7049222-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049222
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049222
    reference: chr 9
allele count: 22
allele frequency: 2.090459901178259e-4
allele num: 105240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+22T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2305T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19122
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18327
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

9-7049223-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049223
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049223
    reference: chr 9
allele count: 1
allele frequency: 9.541620548834014e-6
allele num: 104804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2306T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+23T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+23T>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

9-7049226-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049226
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049226
    reference: chr 9
allele count: 1
allele frequency: 9.674548198599126e-6
allele num: 103364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2309C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+26C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+26C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

9-7049229-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049229
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049229
    reference: chr 9
allele count: 6
allele frequency: 5.852516582130316e-5
allele num: 102520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2312A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+29A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+29A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22823
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

9-7049234-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049234
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049234
    reference: chr 9
allele count: 1
allele frequency: 1.009428058062302e-5
allele num: 99066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2317T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+34T>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+34T>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

9-7049237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7049237
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7049237
    reference: chr 9
allele count: 1
allele frequency: 1.015042936316206e-5
allele num: 98518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1772+2320G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2490+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+37G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2424+37G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19276
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

9-7076416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076416
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076416
    reference: chr 9
allele count: 41
allele frequency: 2.079318389288974e-3
allele num: 19718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+27216T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2425-18T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+27216T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+27216T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2491-18T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+27216T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+27216T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27269T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+27216T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-7076420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076420
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076420
    reference: chr 9
allele count: 1
allele frequency: 5.069965524234435e-5
allele num: 19724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27265A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1659+27220A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2424+27220A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2424+27220A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.9+27220A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1485+27220A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.2491-14A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.2425-14A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.456+27220A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

9-7076452-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076452
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076452
    reference: chr 9
allele count: 1
allele frequency: 5.065856129685917e-5
allele num: 19740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*1A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*1A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27233A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27233A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-7076461-CAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076461
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076458
    reference: chr 9
allele count: 1
allele frequency: 5.069451485349285e-5
allele num: 19726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27222_1660-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27222_2425-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27222_1773-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27222_10-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*12_*14delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*12_*14delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27222_457-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27222_1486-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27222_2425-27220delGTA
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CAGT
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

9-7076463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076463
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076463
    reference: chr 9
allele count: 12242
allele frequency: 6.200364667747164e-1
allele num: 19744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27222G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27222G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 9.75e1
  variant carriers: 2134
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.75e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.25e1
  variant carriers: 465
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.25e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.5e0
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 90
num of homozygotes: 3797
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-7076464-T-TAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076464
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076467
    reference: chr 9
allele count: 1
allele frequency: 5.089576547231271e-5
allele num: 19648
alternate allele: TAAC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*25_*27dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*25_*27dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27209_10-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27209_2425-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27209_1486-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27209_1773-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27209_457-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27209_2425-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27209_1660-27207dupCAA
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-7076467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076467
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076467
    reference: chr 9
allele count: 1
allele frequency: 5.08854060655404e-5
allele num: 19652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27218C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27218C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS

9-7076487-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076487
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076487
    reference: chr 9
allele count: 1
allele frequency: 5.099439061703213e-5
allele num: 19610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*36A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27198A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*36A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27198A>T
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

9-7076494-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7076494
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7076494
    reference: chr 9
allele count: 7
allele frequency: 3.57653791130186e-4
allele num: 19572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27191A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27191A>T
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

9-7103644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103644
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103644
    reference: chr 9
allele count: 4
allele frequency: 3.354691536113254e-5
allele num: 119236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-41C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-41C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16300
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-7103648-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103648
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103648
    reference: chr 9
allele count: 3
allele frequency: 2.510964545180622e-5
allele num: 119476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-37A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-37A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14562
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16371
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

9-7103650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103650
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103650
    reference: chr 9
allele count: 7
allele frequency: 5.857936667336145e-5
allele num: 119496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-35G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-35G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

9-7103655-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103655
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103655
    reference: chr 9
allele count: 5
allele frequency: 4.176272092479369e-5
allele num: 119724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-30T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-30T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15843
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16430
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

9-7103658-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103658
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103658
    reference: chr 9
allele count: 1
allele frequency: 8.341675008341675e-6
allele num: 119880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-27A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-27A>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

9-7103659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103659
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103659
    reference: chr 9
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-26T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-26T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

9-7103660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103660
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103660
    reference: chr 9
allele count: 3
allele frequency: 2.501125506477915e-5
allele num: 119946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-25G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-25G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

9-7103669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103669
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103669
    reference: chr 9
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-16T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-16T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

9-7103673-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103673
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103673
    reference: chr 9
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-12T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-12T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-7103678-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103678
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103678
    reference: chr 9
allele count: 3
allele frequency: 2.483073714181662e-5
allele num: 120818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2425-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1486-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2425-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1660-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.10-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1773-7C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.457-7C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2425-7C>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-7103690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103690
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103690
    reference: chr 9
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1665C>T
  hgvsp: ENST00000442236.2:c.1665C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.15C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2430C>T
  hgvsp: ENST00000381309.3:c.2430C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1778C>T
  hgvsp: ENSP00000440656.1:p.Ala593Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2430C>T
  hgvsp: ENST00000381306.3:c.2430C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.462C>T
  hgvsp: ENST00000420847.1:c.462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1491C>T
  hgvsp: ENST00000428870.2:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala593Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-7103691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103691
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103691
    reference: chr 9
allele count: 3
allele frequency: 2.476718842876956e-5
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1666A>G
  hgvsp: ENSP00000409353.2:p.Ile556Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.463A>G
  hgvsp: ENSP00000400127.1:p.Ile155Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2431A>G
  hgvsp: ENSP00000370710.3:p.Ile811Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1492A>G
  hgvsp: ENSP00000405739.2:p.Ile498Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2431A>G
  hgvsp: ENSP00000370707.3:p.Ile811Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1779A>G
  hgvsp: ENST00000536108.1:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.16A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile811Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

9-7103693-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103693
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103693
    reference: chr 9
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2433C>G
  hgvsp: ENSP00000370707.3:p.Ile811Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1494C>G
  hgvsp: ENSP00000405739.2:p.Ile498Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1781C>G
  hgvsp: ENSP00000440656.1:p.Ser594Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1668C>G
  hgvsp: ENSP00000409353.2:p.Ile556Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2433C>G
  hgvsp: ENSP00000370710.3:p.Ile811Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.18C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.465C>G
  hgvsp: ENSP00000400127.1:p.Ile155Met
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile811Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-7103693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103693
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103693
    reference: chr 9
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1668C>T
  hgvsp: ENST00000442236.2:c.1668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1494C>T
  hgvsp: ENST00000428870.2:c.1494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.18C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1781C>T
  hgvsp: ENSP00000440656.1:p.Ser594Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2433C>T
  hgvsp: ENST00000381306.3:c.2433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2433C>T
  hgvsp: ENST00000381309.3:c.2433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.465C>T
  hgvsp: ENST00000420847.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser594Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

9-7103701-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103701
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103701
    reference: chr 9
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1676G>T
  hgvsp: ENSP00000409353.2:p.Arg559Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1789G>T
  hgvsp: ENSP00000440656.1:p.Asp597Tyr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1502G>T
  hgvsp: ENSP00000405739.2:p.Arg501Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2441G>T
  hgvsp: ENSP00000370707.3:p.Arg814Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2441G>T
  hgvsp: ENSP00000370710.3:p.Arg814Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.473G>T
  hgvsp: ENSP00000400127.1:p.Arg158Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.26G>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19751
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg814Ile
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/9-7103702-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103702
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103702
    reference: chr 9
allele count: 7
allele frequency: 5.775291652228438e-5
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.474A>C
  hgvsp: ENSP00000400127.1:p.Arg158Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2442A>C
  hgvsp: ENSP00000370710.3:p.Arg814Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1503A>C
  hgvsp: ENSP00000405739.2:p.Arg501Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1677A>C
  hgvsp: ENSP00000409353.2:p.Arg559Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1790A>C
  hgvsp: ENSP00000440656.1:p.Asp597Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2442A>C
  hgvsp: ENSP00000370707.3:p.Arg814Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.27A>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg814Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

9-7103705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103705
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103705
    reference: chr 9
allele count: 3
allele frequency: 2.474798303938229e-5
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1680C>T
  hgvsp: ENST00000442236.2:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1506C>T
  hgvsp: ENST00000428870.2:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.30C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2445C>T
  hgvsp: ENST00000381309.3:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.477C>T
  hgvsp: ENST00000420847.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1793C>T
  hgvsp: ENSP00000440656.1:p.Thr598Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2445C>T
  hgvsp: ENST00000381306.3:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr598Ile
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

9-7103706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103706
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103706
    reference: chr 9
allele count: 2
allele frequency: 1.649974425396406e-5
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2446C>T
  hgvsp: ENSP00000370710.3:p.Arg816Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1794C>T
  hgvsp: ENST00000536108.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.478C>T
  hgvsp: ENSP00000400127.1:p.Arg160Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1507C>T
  hgvsp: ENSP00000405739.2:p.Arg503Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.31C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2446C>T
  hgvsp: ENSP00000370707.3:p.Arg816Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1681C>T
  hgvsp: ENSP00000409353.2:p.Arg561Trp
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16527
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg816Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-7103707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103707
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103707
    reference: chr 9
allele count: 8
allele frequency: 6.599135513247765e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2447G>A
  hgvsp: ENSP00000370710.3:p.Arg816Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.479G>A
  hgvsp: ENSP00000400127.1:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2447G>A
  hgvsp: ENSP00000370707.3:p.Arg816Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1508G>A
  hgvsp: ENSP00000405739.2:p.Arg503Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1682G>A
  hgvsp: ENSP00000409353.2:p.Arg561Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1795G>A
  hgvsp: ENSP00000440656.1:p.Gly599Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.32G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg816Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

9-7103708-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103708
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103708
    reference: chr 9
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2448G>C
  hgvsp: ENST00000381306.3:c.2448G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.33G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2448G>C
  hgvsp: ENST00000381309.3:c.2448G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1683G>C
  hgvsp: ENST00000442236.2:c.1683G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1509G>C
  hgvsp: ENST00000428870.2:c.1509G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.480G>C
  hgvsp: ENST00000420847.1:c.480G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1796G>C
  hgvsp: ENSP00000440656.1:p.Gly599Ala
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly599Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

9-7103709-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103709
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103709
    reference: chr 9
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1510G>T
  hgvsp: ENSP00000405739.2:p.Val504Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1684G>T
  hgvsp: ENSP00000409353.2:p.Val562Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2449G>T
  hgvsp: ENSP00000370710.3:p.Val817Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.481G>T
  hgvsp: ENSP00000400127.1:p.Val161Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2449G>T
  hgvsp: ENSP00000370707.3:p.Val817Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1797G>T
  hgvsp: ENST00000536108.1:c.1797G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.34G>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16543
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val817Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

9-7103717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103717
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103717
    reference: chr 9
allele count: 4
allele frequency: 3.298805832288711e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2457G>A
  hgvsp: ENST00000381309.3:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2457G>A
  hgvsp: ENST00000381306.3:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1805G>A
  hgvsp: ENSP00000440656.1:p.Gly602Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.42G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1518G>A
  hgvsp: ENST00000428870.2:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1692G>A
  hgvsp: ENST00000442236.2:c.1692G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.489G>A
  hgvsp: ENST00000420847.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16548
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly602Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-7103717-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103717
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103717
    reference: chr 9
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1805G>C
  hgvsp: ENSP00000440656.1:p.Gly602Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.42G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1692G>C
  hgvsp: ENSP00000409353.2:p.Arg564Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1518G>C
  hgvsp: ENSP00000405739.2:p.Arg506Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2457G>C
  hgvsp: ENSP00000370710.3:p.Arg819Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2457G>C
  hgvsp: ENSP00000370707.3:p.Arg819Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.489G>C
  hgvsp: ENSP00000400127.1:p.Arg163Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16548
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg819Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

9-7103718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103718
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103718
    reference: chr 9
allele count: 14
allele frequency: 1.154562997905293e-4
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1806G>T
  hgvsp: ENST00000536108.1:c.1806G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.490G>T
  hgvsp: ENSP00000400127.1:p.Val164Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1519G>T
  hgvsp: ENSP00000405739.2:p.Val507Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1693G>T
  hgvsp: ENSP00000409353.2:p.Val565Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2458G>T
  hgvsp: ENSP00000370707.3:p.Val820Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.43G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2458G>T
  hgvsp: ENSP00000370710.3:p.Val820Phe
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val820Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

9-7103720-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103720
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103720
    reference: chr 9
allele count: 3
allele frequency: 2.473859550747106e-5
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1808C>G
  hgvsp: ENSP00000440656.1:p.Ser603Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1695C>G
  hgvsp: ENST00000442236.2:c.1695C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2460C>G
  hgvsp: ENST00000381306.3:c.2460C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1521C>G
  hgvsp: ENST00000428870.2:c.1521C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.492C>G
  hgvsp: ENST00000420847.1:c.492C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2460C>G
  hgvsp: ENST00000381309.3:c.2460C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.45C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4673
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser603Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

9-7103720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103720
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103720
    reference: chr 9
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1808C>T
  hgvsp: ENSP00000440656.1:p.Ser603Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2460C>T
  hgvsp: ENST00000381306.3:c.2460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.492C>T
  hgvsp: ENST00000420847.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1521C>T
  hgvsp: ENST00000428870.2:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2460C>T
  hgvsp: ENST00000381309.3:c.2460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.45C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1695C>T
  hgvsp: ENST00000442236.2:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser603Phe
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-7103724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103724
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103724
    reference: chr 9
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1812G>A
  hgvsp: ENST00000536108.1:c.1812G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1525G>A
  hgvsp: ENSP00000405739.2:p.Gly509Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2464G>A
  hgvsp: ENSP00000370707.3:p.Gly822Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.49G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.496G>A
  hgvsp: ENSP00000400127.1:p.Gly166Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2464G>A
  hgvsp: ENSP00000370710.3:p.Gly822Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1699G>A
  hgvsp: ENSP00000409353.2:p.Gly567Arg
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19747
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16556
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly822Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

9-7103747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103747
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103747
    reference: chr 9
allele count: 3
allele frequency: 2.473410833539451e-5
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1722C>T
  hgvsp: ENST00000442236.2:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.519C>T
  hgvsp: ENST00000420847.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.72C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1835C>T
  hgvsp: ENSP00000440656.1:p.Thr612Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2487C>T
  hgvsp: ENST00000381306.3:c.2487C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2487C>T
  hgvsp: ENST00000381309.3:c.2487C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1548C>T
  hgvsp: ENST00000428870.2:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr612Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

9-7103748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103748
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103748
    reference: chr 9
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1723G>A
  hgvsp: ENSP00000409353.2:p.Gly575Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.73G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2488G>A
  hgvsp: ENSP00000370710.3:p.Gly830Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.520G>A
  hgvsp: ENSP00000400127.1:p.Gly174Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1549G>A
  hgvsp: ENSP00000405739.2:p.Gly517Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1836G>A
  hgvsp: ENST00000536108.1:c.1836G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2488G>A
  hgvsp: ENSP00000370707.3:p.Gly830Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly830Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

9-7103748-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103748
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103748
    reference: chr 9
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2488G>C
  hgvsp: ENSP00000370710.3:p.Gly830Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.520G>C
  hgvsp: ENSP00000400127.1:p.Gly174Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2488G>C
  hgvsp: ENSP00000370707.3:p.Gly830Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.73G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1723G>C
  hgvsp: ENSP00000409353.2:p.Gly575Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1549G>C
  hgvsp: ENSP00000405739.2:p.Gly517Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1836G>C
  hgvsp: ENST00000536108.1:c.1836G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16562
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly830Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

9-7103750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103750
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103750
    reference: chr 9
allele count: 22
allele frequency: 1.813774795125893e-4
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1725T>C
  hgvsp: ENST00000442236.2:c.1725T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2490T>C
  hgvsp: ENST00000381306.3:c.2490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1551T>C
  hgvsp: ENST00000428870.2:c.1551T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.522T>C
  hgvsp: ENST00000420847.1:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2490T>C
  hgvsp: ENST00000381309.3:c.2490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1838T>C
  hgvsp: ENSP00000440656.1:p.Val613Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.75T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val613Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

9-7103751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103751
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103751
    reference: chr 9
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1726C>T
  hgvsp: ENSP00000409353.2:p.Arg576Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1552C>T
  hgvsp: ENSP00000405739.2:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.523C>T
  hgvsp: ENSP00000400127.1:p.Arg175Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1839C>T
  hgvsp: ENST00000536108.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2491C>T
  hgvsp: ENSP00000370710.3:p.Arg831Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2491C>T
  hgvsp: ENSP00000370707.3:p.Arg831Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.76C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg831Cys
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-7103752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103752
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103752
    reference: chr 9
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2492G>A
  hgvsp: ENSP00000370707.3:p.Arg831His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1727G>A
  hgvsp: ENSP00000409353.2:p.Arg576His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1840G>A
  hgvsp: ENSP00000440656.1:p.Ala614Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2492G>A
  hgvsp: ENSP00000370710.3:p.Arg831His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1553G>A
  hgvsp: ENSP00000405739.2:p.Arg518His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.77G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.524G>A
  hgvsp: ENSP00000400127.1:p.Arg175His
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg831His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

9-7103758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103758
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103758
    reference: chr 9
allele count: 5
allele frequency: 4.122079506669525e-5
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1559C>T
  hgvsp: ENSP00000405739.2:p.Pro520Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1733C>T
  hgvsp: ENSP00000409353.2:p.Pro578Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.530C>T
  hgvsp: ENSP00000400127.1:p.Pro177Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2498C>T
  hgvsp: ENSP00000370707.3:p.Pro833Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2498C>T
  hgvsp: ENSP00000370710.3:p.Pro833Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1846C>T
  hgvsp: ENSP00000440656.1:p.Arg616Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.83C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro833Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

9-7103759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103759
    reference: chr 9
allele count: 9
allele frequency: 7.41962077493817e-5
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2499G>A
  hgvsp: ENST00000381309.3:c.2499G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.531G>A
  hgvsp: ENST00000420847.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1560G>A
  hgvsp: ENST00000428870.2:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1847G>A
  hgvsp: ENSP00000440656.1:p.Arg616Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.84G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2499G>A
  hgvsp: ENST00000381306.3:c.2499G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1734G>A
  hgvsp: ENST00000442236.2:c.1734G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg616Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

9-7103760-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103760
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103760
    reference: chr 9
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1848G>T
  hgvsp: ENST00000536108.1:c.1848G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1735G>T
  hgvsp: ENSP00000409353.2:p.Ala579Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2500G>T
  hgvsp: ENSP00000370707.3:p.Ala834Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1561G>T
  hgvsp: ENSP00000405739.2:p.Ala521Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.532G>T
  hgvsp: ENSP00000400127.1:p.Ala178Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.85G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2500G>T
  hgvsp: ENSP00000370710.3:p.Ala834Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala834Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/9-7103761-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103761
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103761
    reference: chr 9
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.86C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2501C>A
  hgvsp: ENSP00000370707.3:p.Ala834Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2501C>A
  hgvsp: ENSP00000370710.3:p.Ala834Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.533C>A
  hgvsp: ENSP00000400127.1:p.Ala178Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1562C>A
  hgvsp: ENSP00000405739.2:p.Ala521Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1736C>A
  hgvsp: ENSP00000409353.2:p.Ala579Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1849C>A
  hgvsp: ENSP00000440656.1:p.Pro617Thr
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala834Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

9-7103771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103771
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103771
    reference: chr 9
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2511T>C
  hgvsp: ENST00000381309.3:c.2511T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1746T>C
  hgvsp: ENST00000442236.2:c.1746T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1859T>C
  hgvsp: ENSP00000440656.1:p.Met620Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.96T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2511T>C
  hgvsp: ENST00000381306.3:c.2511T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.543T>C
  hgvsp: ENST00000420847.1:c.543T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1572T>C
  hgvsp: ENST00000428870.2:c.1572T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met620Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-7103780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103780
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103780
    reference: chr 9
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2520T>C
  hgvsp: ENST00000381306.3:c.2520T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1755T>C
  hgvsp: ENST00000442236.2:c.1755T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1581T>C
  hgvsp: ENST00000428870.2:c.1581T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.552T>C
  hgvsp: ENST00000420847.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2520T>C
  hgvsp: ENST00000381309.3:c.2520T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1868T>C
  hgvsp: ENSP00000440656.1:p.Val623Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.105T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16589
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4251
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val623Ala
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

9-7103783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103783
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103783
    reference: chr 9
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2523C>T
  hgvsp: ENST00000381306.3:c.2523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1758C>T
  hgvsp: ENST00000442236.2:c.1758C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1871C>T
  hgvsp: ENSP00000440656.1:p.Pro624Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2523C>T
  hgvsp: ENST00000381309.3:c.2523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.555C>T
  hgvsp: ENST00000420847.1:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1584C>T
  hgvsp: ENST00000428870.2:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.108C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro624Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

9-7103795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103795
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103795
    reference: chr 9
allele count: 620
allele frequency: 5.110283208598463e-3
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1883G>A
  hgvsp: ENSP00000440656.1:p.Gly628Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1596G>A
  hgvsp: ENST00000428870.2:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2535G>A
  hgvsp: ENST00000381309.3:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.567G>A
  hgvsp: ENST00000420847.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2535G>A
  hgvsp: ENST00000381306.3:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.120G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1770G>A
  hgvsp: ENST00000442236.2:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 16086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 15752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 19552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16981
  bin: 9.75e1
  variant carriers: 602
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly628Glu
num of homozygotes: 18
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-7103796-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103796
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103796
    reference: chr 9
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1771G>T
  hgvsp: ENSP00000409353.2:p.Val591Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2536G>T
  hgvsp: ENSP00000370710.3:p.Val846Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1597G>T
  hgvsp: ENSP00000405739.2:p.Val533Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.568G>T
  hgvsp: ENSP00000400127.1:p.Val190Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2536G>T
  hgvsp: ENSP00000370707.3:p.Val846Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.1884G>T
  hgvsp: ENST00000536108.1:c.1884G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.121G>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val846Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/9-7103806-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7103806
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 7103806
    reference: chr 9
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000405739
  ensembl transcript: ENST00000428870
  gene symbol: KDM4C
  hgvsc: ENST00000428870.2:c.1607A>C
  hgvsp: ENSP00000405739.2:p.Glu536Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.*4A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.2546A>C
  hgvsp: ENSP00000370707.3:p.Glu849Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.2546A>C
  hgvsp: ENSP00000370710.3:p.Glu849Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000495890
  gene symbol: KDM4C
  hgvsc: ENST00000495890.1:n.131A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000400127
  ensembl transcript: ENST00000420847
  gene symbol: KDM4C
  hgvsc: ENST00000420847.1:c.578A>C
  hgvsp: ENSP00000400127.1:p.Glu193Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.1781A>C
  hgvsp: ENSP00000409353.2:p.Glu594Ala
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu849Ala
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1098
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 4.517e0

DP
type: SiteQuality
SIO_000300: 1.661643e6

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.361e0

VQSLOD
type: SiteQuality
SIO_000300: -1.828e-1

DP
type: SiteQuality
SIO_000300: 1.661675e6

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e0

MQ
type: SiteQuality
SIO_000300: 5.782e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.065752759917505e-4
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.566e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

FS
type: SiteQuality
SIO_000300: 4.284e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.661783e6

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.185e1

FS
type: SiteQuality
SIO_000300: 2.533e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 1.661412e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 1.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.660985e6

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeQuality
all individuals: 48583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 1.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.660393e6

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48378
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.966e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.59e-1

FS
type: SiteQuality
SIO_000300: 3.996e0

QD
type: SiteQuality
SIO_000300: 4.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.313e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

DP
type: SiteQuality
SIO_000300: 1.658001e6

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6056
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

FS
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.657754e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.941e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.805843906189927e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.475478e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.724e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61818
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.524008350730688e-5
allele num: 15328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

QD
type: SiteQuality
SIO_000300: 1.724e1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 1.475478e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.295001295001295e-4
allele num: 7722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 2.504e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.232e0

QD
type: SiteQuality
SIO_000300: 2.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 1.460039e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2264
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variant carriers: 2

GenotypeQuality
all individuals: 600
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.751031636863824e-4
allele num: 7270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.347e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.508e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.300342e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.079002079002079e-4
allele num: 9620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.596e1

VQSLOD
type: SiteQuality
SIO_000300: -7.235e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

MQRankSum
type: SiteQuality
SIO_000300: -1.271e0

DP
type: SiteQuality
SIO_000300: 1.298573e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 714
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57580
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.225490196078431e-3
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.960248096983366e-3
allele num: 7094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

DP
type: SiteQuality
SIO_000300: 1.215856e6

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.263e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.74544439014173e-5
allele num: 57292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.196685e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 2663
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.771165426850868e-5
allele num: 56460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.439e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.151674e6

GenotypeQuality
all individuals: 294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 9.75e1
variant carriers: 6

African
type: Population
allele count: 1
allele frequency: 1.068604402650139e-4
allele num: 9358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.930485103950846e-5
allele num: 55988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.528e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 7.651e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.111068e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
all individuals: 826
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.854255516410161e-5
allele num: 53930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e0

QD
type: SiteQuality
SIO_000300: 1.16e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.373e1

DP
type: SiteQuality
SIO_000300: 1.037987e6

VQSLOD
type: SiteQuality
SIO_000300: -1.483e0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

GenotypeQuality
all individuals: 5712
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 865
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9301
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.175660160734788e-5
allele num: 13936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.41e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.439e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

DP
type: SiteQuality
SIO_000300: 1.027251e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5353
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 38
allele frequency: 1.777362020579981e-2
allele num: 2138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.425742574257425e-3
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.411e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 6.62e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5339
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265502404454569e-4
allele num: 7902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

DP
type: SiteQuality
SIO_000300: 6.60564e5

QD
type: SiteQuality
SIO_000300: 6.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.027e0

FS
type: SiteQuality
SIO_000300: 4.57e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

GenotypeQuality
all individuals: 1224
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.887e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 6.61229e5

FS
type: SiteQuality
SIO_000300: 1.294e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 5.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.677268475210477e-4
allele num: 2138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

DP
type: SiteQuality
SIO_000300: 6.6165e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.536e1

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 27

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 59

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 104

GenotypeQuality
all individuals: 8878
bin: 9.75e1
variant carriers: 8038

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 34

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 110
bin: 7.75e1
variant carriers: 55

GenotypeQuality
all individuals: 216
bin: 6.25e1
variant carriers: 49

GenotypeQuality
all individuals: 135
bin: 6.75e1
variant carriers: 39

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 36

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 36

African
type: Population
allele count: 1088
allele frequency: 5.093632958801498e-1
allele num: 2136
num of homozygotes: 274

Latino
type: Population
allele count: 246
allele frequency: 6.089108910891089e-1
allele num: 404
num of homozygotes: 76

East Asian
type: Population
allele count: 312
allele frequency: 5.048543689320388e-1
allele num: 618
num of homozygotes: 76

Other
type: Population
allele count: 127
allele frequency: 6.684210526315789e-1
allele num: 190
num of homozygotes: 44

European (Finnish)
type: Population
allele count: 22
allele frequency: 6.875e-1
allele num: 32
num of homozygotes: 7

South Asian
type: Population
allele count: 5068
allele frequency: 6.410321274981027e-1
allele num: 7906
num of homozygotes: 1622

European (Non-Finnish)
type: Population
allele count: 5379
allele frequency: 6.359659493970206e-1
allele num: 8458
num of homozygotes: 1698

DP
type: SiteQuality
SIO_000300: 8.31976e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

FS
type: SiteQuality
SIO_000300: 1.805e0

QD
type: SiteQuality
SIO_000300: 2.193e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.051e0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.61804e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 1.591e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.28e-1

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.699248120300752e-4
allele num: 2128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.61634e5

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.458e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.305e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

DP
type: SiteQuality
SIO_000300: 5.55216e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

FS
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: -3.722e-1

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 4925
bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 3.30812854442344e-3
allele num: 2116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 5.51678e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 3.75e1
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GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.057852491291837e-5
allele num: 66030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

FS
type: SiteQuality
SIO_000300: 6.183e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.982e0

DP
type: SiteQuality
SIO_000300: 1.92491e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4012
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GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.910341314314824e-4
allele num: 15704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.849e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.937441e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058809293320426e-4
allele num: 66112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.929e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

DP
type: SiteQuality
SIO_000300: 1.942453e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.861921431349669e-4
allele num: 10284
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 5.525e0

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
type: Population
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.960114e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15898
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.352e1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.463e0

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.961713e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.019414837404511e-5
allele num: 66238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.74e-1

FS
type: SiteQuality
SIO_000300: 5.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.963065e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.201e0

QD
type: SiteQuality
SIO_000300: 1.02e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

African
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allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
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SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.447e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.975179e6

QD
type: SiteQuality
SIO_000300: 1.558e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

FS
type: SiteQuality
SIO_000300: 2.005e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.317e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.417e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.5e-1

DP
type: SiteQuality
SIO_000300: 1.979177e6

QD
type: SiteQuality
SIO_000300: 1.769e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.834637964774951e-4
allele num: 16352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.221e0

DP
type: SiteQuality
SIO_000300: 1.984304e6

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

DP
type: SiteQuality
SIO_000300: 1.990076e6

VQSLOD
type: SiteQuality
SIO_000300: -6.552e-1

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.027e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 1.990407e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.990992e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8624
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4672
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.050294082343056e-4
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 1.197e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 1.992752e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 1.993329e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.282e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

GenotypeQuality
all individuals: 4670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

DP
type: SiteQuality
SIO_000300: 1.993758e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.289e0

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2290
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.957328385899814e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.079e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 1.994535e6

FS
type: SiteQuality
SIO_000300: 3.648e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 3450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 4.477e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.994674e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4671
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

DP
type: SiteQuality
SIO_000300: 1.994678e6

QD
type: SiteQuality
SIO_000300: 1.575e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

FS
type: SiteQuality
SIO_000300: 7.362e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.281e0

VQSLOD
type: SiteQuality
SIO_000300: -5.399e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42306760358614e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 1.995279e6

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.877e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.995279e6

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.877e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.799478151336113e-4
allele num: 66686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.996272e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

DP
type: SiteQuality
SIO_000300: 1.99639e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.99639e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
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SIO_000300: 1.15e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998590662388677e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.898e0

DP
type: SiteQuality
SIO_000300: 1.996598e6

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
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SIO_000300: -2.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

FS
type: SiteQuality
SIO_000300: 8.159000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.997145e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 1.997423e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 1.795e0

MQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.997423e6

QD
type: SiteQuality
SIO_000300: 1.388e1

FS
type: SiteQuality
SIO_000300: 1.795e0

BaseQRankSum
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SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 22

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
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allele count: 19
allele frequency: 2.848234094861186e-4
allele num: 66708
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.317e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.3e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.998951e6

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3116
bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele num: 8634
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Other
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
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South Asian
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16586
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 6495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.788376939106274e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.000028e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16587
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6497
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.376e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.16e-2

DP
type: SiteQuality
SIO_000300: 1.999996e6

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4670
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1054e1

QD
type: SiteQuality
SIO_000300: 1.294e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.157e0

DP
type: SiteQuality
SIO_000300: 2.000048e6

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4674
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 1.277e0

DP
type: SiteQuality
SIO_000300: 2.000189e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.266e1

FS
type: SiteQuality
SIO_000300: 2.204e0

DP
type: SiteQuality
SIO_000300: 2.000412e6

GenotypeQuality
all individuals: 3448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3119
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 2.573e1

VQSLOD
type: SiteQuality
SIO_000300: -6.531e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

DP
type: SiteQuality
SIO_000300: 2.000596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
all individuals: 3414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.339688041594454e-3
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498890820792614e-4
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 578
allele frequency: 5.554487795502595e-2
allele num: 10406
num of homozygotes: 18

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.476e1

DP
type: SiteQuality
SIO_000300: 2.04851e6

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
all individuals: 4207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16809
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19660
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 9.986000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 1.024e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.986e-1

DP
type: SiteQuality
SIO_000300: 2.027731e6

GenotypeQuality
all individuals: 4644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16815
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 6.75e1
variant carriers: 0