9-6793042-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793042
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793042
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.54C>G
  hgvsp: ENST00000401787.3:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-314C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.54C>G
  hgvsp: ENST00000381309.3:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.54C>G
  hgvsp: ENST00000381306.3:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.54C>G
  hgvsp: ENST00000543771.1:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.54C>G
  hgvsp: ENST00000438023.1:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.172C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.120C>G
  hgvsp: ENST00000535193.1:c.120C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-375C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr18Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

9-6793047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793047
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793047
    reference: chr 9
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.59G>T
  hgvsp: ENSP00000404756.1:p.Arg20Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-309G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.177G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.125G>T
  hgvsp: ENSP00000442382.1:p.Arg42Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.59G>T
  hgvsp: ENSP00000383990.3:p.Arg20Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-370G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.59G>T
  hgvsp: ENSP00000370707.3:p.Arg20Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.59G>T
  hgvsp: ENSP00000370710.3:p.Arg20Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.59G>T
  hgvsp: ENSP00000445427.1:p.Arg20Ile
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg20Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

9-6793054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793054
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793054
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.66C>T
  hgvsp: ENST00000381306.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.66C>T
  hgvsp: ENST00000381309.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.132C>T
  hgvsp: ENST00000535193.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-302C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.66C>T
  hgvsp: ENST00000438023.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.66C>T
  hgvsp: ENST00000543771.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.66C>T
  hgvsp: ENST00000401787.3:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-363C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.184C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser22Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

9-6793055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793055
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793055
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.67A>G
  hgvsp: ENSP00000370710.3:p.Met23Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-362A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.67A>G
  hgvsp: ENSP00000404756.1:p.Met23Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.67A>G
  hgvsp: ENSP00000383990.3:p.Met23Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-301A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.133A>G
  hgvsp: ENSP00000442382.1:p.Met45Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.67A>G
  hgvsp: ENSP00000370707.3:p.Met23Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.185A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.67A>G
  hgvsp: ENSP00000445427.1:p.Met23Val
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met23Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-6793056-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793056
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793056
    reference: chr 9
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.68T>C
  hgvsp: ENSP00000370710.3:p.Met23Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-300T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.134T>C
  hgvsp: ENSP00000442382.1:p.Met45Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.68T>C
  hgvsp: ENSP00000383990.3:p.Met23Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.68T>C
  hgvsp: ENSP00000370707.3:p.Met23Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.68T>C
  hgvsp: ENSP00000404756.1:p.Met23Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-361T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.68T>C
  hgvsp: ENSP00000445427.1:p.Met23Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.186T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met23Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

9-6793067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793067
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793067
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.145C>T
  hgvsp: ENSP00000442382.1:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.197C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.79C>T
  hgvsp: ENSP00000445427.1:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.79C>T
  hgvsp: ENSP00000370710.3:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.79C>T
  hgvsp: ENSP00000404756.1:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.79C>T
  hgvsp: ENSP00000370707.3:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-289C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.79C>T
  hgvsp: ENSP00000383990.3:p.Arg27Trp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-350C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28942
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg27Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

9-6793068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793068
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793068
    reference: chr 9
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.146G>A
  hgvsp: ENSP00000442382.1:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.80G>A
  hgvsp: ENSP00000370710.3:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.80G>A
  hgvsp: ENSP00000445427.1:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.80G>A
  hgvsp: ENSP00000370707.3:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.80G>A
  hgvsp: ENSP00000404756.1:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.198G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-288G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-349G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.80G>A
  hgvsp: ENSP00000383990.3:p.Arg27Gln
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg27Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-6793071-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793071
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793071
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.83A>C
  hgvsp: ENSP00000383990.3:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.83A>C
  hgvsp: ENSP00000404756.1:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.83A>C
  hgvsp: ENSP00000370710.3:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.83A>C
  hgvsp: ENSP00000445427.1:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-285A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.83A>C
  hgvsp: ENSP00000370707.3:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.201A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-346A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.149A>C
  hgvsp: ENSP00000442382.1:p.Glu50Ala
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu28Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

9-6793072-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793072
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793072
    reference: chr 9
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-284G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.84G>C
  hgvsp: ENSP00000383990.3:p.Glu28Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.202G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.84G>C
  hgvsp: ENSP00000445427.1:p.Glu28Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.84G>C
  hgvsp: ENSP00000404756.1:p.Glu28Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-345G>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.150G>C
  hgvsp: ENSP00000442382.1:p.Glu50Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.84G>C
  hgvsp: ENSP00000370707.3:p.Glu28Asp
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.84G>C
  hgvsp: ENSP00000370710.3:p.Glu28Asp
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28940
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu28Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

9-6793079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793079
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793079
    reference: chr 9
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.91A>G
  hgvsp: ENSP00000445427.1:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.91A>G
  hgvsp: ENSP00000404756.1:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-277A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.157A>G
  hgvsp: ENSP00000442382.1:p.Lys53Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.91A>G
  hgvsp: ENSP00000383990.3:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.91A>G
  hgvsp: ENSP00000370710.3:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-338A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.91A>G
  hgvsp: ENSP00000370707.3:p.Lys31Glu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.209A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys31Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-6793080-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793080
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793080
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.158A>C
  hgvsp: ENSP00000442382.1:p.Lys53Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.92A>C
  hgvsp: ENSP00000370707.3:p.Lys31Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.210A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.92A>C
  hgvsp: ENSP00000404756.1:p.Lys31Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-337A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.92A>C
  hgvsp: ENSP00000370710.3:p.Lys31Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-276A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.92A>C
  hgvsp: ENSP00000383990.3:p.Lys31Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.92A>C
  hgvsp: ENSP00000445427.1:p.Lys31Thr
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys31Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

9-6793085-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793085
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793085
    reference: chr 9
allele count: 21
allele frequency: 1.7298757784441e-4
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.97C>G
  hgvsp: ENSP00000370707.3:p.Leu33Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.163C>G
  hgvsp: ENSP00000442382.1:p.Leu55Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.97C>G
  hgvsp: ENSP00000370710.3:p.Leu33Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.97C>G
  hgvsp: ENSP00000445427.1:p.Leu33Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.97C>G
  hgvsp: ENSP00000404756.1:p.Leu33Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.97C>G
  hgvsp: ENSP00000383990.3:p.Leu33Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-332C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-271C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.215C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu33Val
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

9-6793089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793089
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793089
    reference: chr 9
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.167C>T
  hgvsp: ENSP00000442382.1:p.Ala56Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-328C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-267C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.219C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.101C>T
  hgvsp: ENSP00000370710.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.101C>T
  hgvsp: ENSP00000445427.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.101C>T
  hgvsp: ENSP00000404756.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.101C>T
  hgvsp: ENSP00000370707.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.101C>T
  hgvsp: ENSP00000383990.3:p.Ala34Val
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala34Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/9-6793090-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793090
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793090
    reference: chr 9
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.102A>C
  hgvsp: ENST00000543771.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.102A>C
  hgvsp: ENST00000401787.3:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.102A>C
  hgvsp: ENST00000381306.3:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.220A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-327A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.168A>C
  hgvsp: ENST00000535193.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-266A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.102A>C
  hgvsp: ENST00000438023.1:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.102A>C
  hgvsp: ENST00000381309.3:c.102A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala34Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

9-6793092-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793092
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793092
    reference: chr 9
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-325A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.104A>G
  hgvsp: ENSP00000383990.3:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-264A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.104A>G
  hgvsp: ENSP00000370707.3:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.104A>G
  hgvsp: ENSP00000404756.1:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.104A>G
  hgvsp: ENSP00000370710.3:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.104A>G
  hgvsp: ENSP00000445427.1:p.Tyr35Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.170A>G
  hgvsp: ENSP00000442382.1:p.Tyr57Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.222A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr35Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-6793093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793093
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793093
    reference: chr 9
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.171C>T
  hgvsp: ENST00000535193.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.105C>T
  hgvsp: ENST00000401787.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-324C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.105C>T
  hgvsp: ENST00000381306.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-263C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.105C>T
  hgvsp: ENST00000438023.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.105C>T
  hgvsp: ENST00000381309.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.105C>T
  hgvsp: ENST00000543771.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.223C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr35Tyr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

9-6793094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793094
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793094
    reference: chr 9
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.106A>G
  hgvsp: ENSP00000370707.3:p.Met36Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.172A>G
  hgvsp: ENSP00000442382.1:p.Met58Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.106A>G
  hgvsp: ENSP00000404756.1:p.Met36Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.106A>G
  hgvsp: ENSP00000383990.3:p.Met36Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.106A>G
  hgvsp: ENSP00000370710.3:p.Met36Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-323A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-262A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.106A>G
  hgvsp: ENSP00000445427.1:p.Met36Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.224A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met36Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

9-6793106-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793106
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793106
    reference: chr 9
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.118G>T
  hgvsp: ENSP00000370710.3:p.Gly40Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.118G>T
  hgvsp: ENSP00000445427.1:p.Gly40Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-311G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.184G>T
  hgvsp: ENSP00000442382.1:p.Gly62Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.118G>T
  hgvsp: ENSP00000404756.1:p.Gly40Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.118G>T
  hgvsp: ENSP00000370707.3:p.Gly40Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.118G>T
  hgvsp: ENSP00000383990.3:p.Gly40Ter
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.236G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-250G>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly40Ter
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

9-6793110-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793110
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793110
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.240C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.188C>G
  hgvsp: ENSP00000442382.1:p.Ala63Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-246C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.122C>G
  hgvsp: ENSP00000370710.3:p.Ala41Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.122C>G
  hgvsp: ENSP00000370707.3:p.Ala41Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.122C>G
  hgvsp: ENSP00000445427.1:p.Ala41Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.122C>G
  hgvsp: ENSP00000383990.3:p.Ala41Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.122C>G
  hgvsp: ENSP00000404756.1:p.Ala41Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-307C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala41Gly
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

9-6793115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793115
    reference: chr 9
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.127C>T
  hgvsp: ENSP00000370707.3:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.127C>T
  hgvsp: ENSP00000383990.3:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.127C>T
  hgvsp: ENSP00000370710.3:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.193C>T
  hgvsp: ENSP00000442382.1:p.Arg65Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.245C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-302C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-241C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.127C>T
  hgvsp: ENSP00000404756.1:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.127C>T
  hgvsp: ENSP00000445427.1:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg43Cys
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-6793116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793116
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793116
    reference: chr 9
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-240G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.128G>A
  hgvsp: ENSP00000370710.3:p.Arg43His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.128G>A
  hgvsp: ENSP00000370707.3:p.Arg43His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-301G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.128G>A
  hgvsp: ENSP00000445427.1:p.Arg43His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.128G>A
  hgvsp: ENSP00000404756.1:p.Arg43His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.246G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.128G>A
  hgvsp: ENSP00000383990.3:p.Arg43His
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.194G>A
  hgvsp: ENSP00000442382.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg43His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-6793117-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793117
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793117
    reference: chr 9
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.129T>G
  hgvsp: ENST00000381306.3:c.129T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.129T>G
  hgvsp: ENST00000381309.3:c.129T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.129T>G
  hgvsp: ENST00000438023.1:c.129T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.195T>G
  hgvsp: ENST00000535193.1:c.195T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.129T>G
  hgvsp: ENST00000401787.3:c.129T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-239T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-300T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.129T>G
  hgvsp: ENST00000543771.1:c.129T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.247T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg43Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

9-6793118-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793118
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793118
    reference: chr 9
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-238G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.130G>T
  hgvsp: ENSP00000370707.3:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.130G>T
  hgvsp: ENSP00000404756.1:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-299G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.130G>T
  hgvsp: ENSP00000370710.3:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.196G>T
  hgvsp: ENSP00000442382.1:p.Ala66Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.130G>T
  hgvsp: ENSP00000383990.3:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.248G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.130G>T
  hgvsp: ENSP00000445427.1:p.Ala44Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala44Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

9-6793119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793119
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793119
    reference: chr 9
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-237C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.131C>T
  hgvsp: ENSP00000370710.3:p.Ala44Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.249C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.131C>T
  hgvsp: ENSP00000445427.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.131C>T
  hgvsp: ENSP00000404756.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.131C>T
  hgvsp: ENSP00000370707.3:p.Ala44Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.197C>T
  hgvsp: ENSP00000442382.1:p.Ala66Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.131C>T
  hgvsp: ENSP00000383990.3:p.Ala44Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-298C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala44Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

9-6793120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793120
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793120
    reference: chr 9
allele count: 12
allele frequency: 9.896907216494845e-5
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.132G>A
  hgvsp: ENST00000438023.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.132G>A
  hgvsp: ENST00000401787.3:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-236G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.250G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-297G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.198G>A
  hgvsp: ENST00000535193.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.132G>A
  hgvsp: ENST00000381306.3:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.132G>A
  hgvsp: ENST00000543771.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.132G>A
  hgvsp: ENST00000381309.3:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala44Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

9-6793127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793127
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793127
    reference: chr 9
allele count: 2
allele frequency: 1.650301179965344e-5
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.139G>T
  hgvsp: ENSP00000404756.1:p.Ala47Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.139G>T
  hgvsp: ENSP00000370707.3:p.Ala47Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-290G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.139G>T
  hgvsp: ENSP00000370710.3:p.Ala47Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.139G>T
  hgvsp: ENSP00000383990.3:p.Ala47Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-229G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.257G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.205G>T
  hgvsp: ENSP00000442382.1:p.Ala69Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.139G>T
  hgvsp: ENSP00000445427.1:p.Ala47Ser
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala47Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-6793140-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793140
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793140
    reference: chr 9
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+8T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+8T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11251
  bin: 6.25e1
  variant carriers: 0
hgvs: c.144+8T>G
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/9-6793141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793141
    reference: chr 9
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+9C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+9C>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

9-6793145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793145
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793145
    reference: chr 9
allele count: 169
allele frequency: 1.399052948773138e-3
allele num: 120796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+13C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+13C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

9-6793146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793146
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793146
    reference: chr 9
allele count: 6
allele frequency: 4.968121222157821e-5
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+14G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+14G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/9-6793159-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793159
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793159
    reference: chr 9
allele count: 4
allele frequency: 3.31746479340488e-5
allele num: 120574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+27A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+27A>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7075
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

9-6793163-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793163
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793163
    reference: chr 9
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+31A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+31A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

9-6793166-A-AATAGTATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793166
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793174
    reference: chr 9
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: AATAGTATG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-6793166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6793166
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6793166
    reference: chr 9
allele count: 5
allele frequency: 4.150617611900651e-5
allele num: 120464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.262+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-224+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.210+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.144+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.144+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.144+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.144+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.144+34A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-285+34A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7717
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

9-6805548-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805548
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805548
    reference: chr 9
allele count: 1
allele frequency: 1.23334977799704e-5
allele num: 81080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9083T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-51T>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-51T>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10591
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum

9-6805552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805552
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805552
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 81314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9079T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-47T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-47T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15304
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5494
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

9-6805559-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805559
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805559
    reference: chr 9
allele count: 6
allele frequency: 7.254963604265919e-5
allele num: 82702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-40A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9072A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-40A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19221
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

9-6805562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805562
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805562
    reference: chr 9
allele count: 1
allele frequency: 1.200076804915515e-5
allele num: 83328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9069T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-37T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-37T>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15481
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8054
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

9-6805564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805564
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805564
    reference: chr 9
allele count: 8
allele frequency: 9.594396872226619e-5
allele num: 83382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-35C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9067C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-35C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13405
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-6805582-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805582
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805582
    reference: chr 9
allele count: 1
allele frequency: 1.00559108644061e-5
allele num: 99444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9049C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-17C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-17C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

9-6805583-ATTATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805583
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805578
    reference: chr 9
allele count: 1
allele frequency: 9.907856930545924e-6
allele num: 100930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-8_211-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9040_-223-9036delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-8_145-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-8_145-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-8_145-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-8_263-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-8_145-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-8_-284-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-8_145-4delATTTT
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: ATTATT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

9-6805591-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805591
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805591
    reference: chr 9
allele count: 1
allele frequency: 8.963786303334528e-6
allele num: 111560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9040A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-8A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-8A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 7.75e1
  variant carriers: 0
hgvs: c.145-8A>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

9-6805597-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805597
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805597
    reference: chr 9
allele count: 3
allele frequency: 2.556106538520525e-5
allele num: 117366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9034A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145-2A>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284-2A>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
hgvs: c.145-2A>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

9-6805599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805599
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805599
    reference: chr 9
allele count: 1
allele frequency: 8.438818565400844e-6
allele num: 118500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-284G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.145G>A
  hgvsp: ENSP00000370707.3:p.Val49Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.145G>A
  hgvsp: ENSP00000404756.1:p.Val49Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.145G>A
  hgvsp: ENSP00000370710.3:p.Val49Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.263G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.145G>A
  hgvsp: ENSP00000445427.1:p.Val49Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.145G>A
  hgvsp: ENSP00000383990.3:p.Val49Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.211G>A
  hgvsp: ENSP00000442382.1:p.Val71Met
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9032G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val49Met
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-6805628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805628
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805628
    reference: chr 9
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.174A>G
  hgvsp: ENST00000381306.3:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9003A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.174A>G
  hgvsp: ENST00000401787.3:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.292A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.240A>G
  hgvsp: ENST00000535193.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.174A>G
  hgvsp: ENST00000438023.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.12A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.174A>G
  hgvsp: ENST00000381309.3:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.174A>G
  hgvsp: ENST00000543771.1:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-255A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg58Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/9-6805629-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805629
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805629
    reference: chr 9
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.175C>A
  hgvsp: ENSP00000370707.3:p.Gln59Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.175C>A
  hgvsp: ENSP00000404756.1:p.Gln59Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-254C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.241C>A
  hgvsp: ENSP00000442382.1:p.Gln81Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.13C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.175C>A
  hgvsp: ENSP00000370710.3:p.Gln59Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.175C>A
  hgvsp: ENSP00000445427.1:p.Gln59Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9002C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.293C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.175C>A
  hgvsp: ENSP00000383990.3:p.Gln59Lys
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln59Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-6805630-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805630
    reference: chr 9
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.176A>C
  hgvsp: ENSP00000383990.3:p.Gln59Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-253A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.294A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.176A>C
  hgvsp: ENSP00000445427.1:p.Gln59Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.176A>C
  hgvsp: ENSP00000404756.1:p.Gln59Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.14A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.242A>C
  hgvsp: ENSP00000442382.1:p.Gln81Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.176A>C
  hgvsp: ENSP00000370707.3:p.Gln59Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.176A>C
  hgvsp: ENSP00000370710.3:p.Gln59Pro
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-9001A>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln59Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-6805636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805636
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805636
    reference: chr 9
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.248A>G
  hgvsp: ENSP00000442382.1:p.Tyr83Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.20A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.300A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.182A>G
  hgvsp: ENSP00000445427.1:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8995A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.182A>G
  hgvsp: ENSP00000404756.1:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.182A>G
  hgvsp: ENSP00000383990.3:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-247A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.182A>G
  hgvsp: ENSP00000370710.3:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.182A>G
  hgvsp: ENSP00000370707.3:p.Tyr61Cys
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr61Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-6805645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805645
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805645
    reference: chr 9
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.257T>C
  hgvsp: ENSP00000442382.1:p.Ile86Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.191T>C
  hgvsp: ENSP00000383990.3:p.Ile64Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8986T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.191T>C
  hgvsp: ENSP00000445427.1:p.Ile64Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.191T>C
  hgvsp: ENSP00000404756.1:p.Ile64Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.309T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.29T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-238T>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.191T>C
  hgvsp: ENSP00000370710.3:p.Ile64Thr
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.191T>C
  hgvsp: ENSP00000370707.3:p.Ile64Thr
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile64Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

9-6805656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805656
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805656
    reference: chr 9
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.268C>T
  hgvsp: ENSP00000442382.1:p.Leu90Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.320C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-227C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8975C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.40C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.202C>T
  hgvsp: ENSP00000383990.3:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.202C>T
  hgvsp: ENSP00000404756.1:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.202C>T
  hgvsp: ENSP00000445427.1:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.202C>T
  hgvsp: ENSP00000370707.3:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.202C>T
  hgvsp: ENSP00000370710.3:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu68Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-6805658-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805658
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805658
    reference: chr 9
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.204C>A
  hgvsp: ENST00000543771.1:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8973C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.204C>A
  hgvsp: ENST00000438023.1:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.204C>A
  hgvsp: ENST00000381306.3:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-225C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.204C>A
  hgvsp: ENST00000401787.3:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.322C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.270C>A
  hgvsp: ENST00000535193.1:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.204C>A
  hgvsp: ENST00000381309.3:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.42C>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5038
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu68Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-6805658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805658
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805658
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-225C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.204C>T
  hgvsp: ENST00000438023.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.270C>T
  hgvsp: ENST00000535193.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8973C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.42C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.204C>T
  hgvsp: ENST00000381309.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.204C>T
  hgvsp: ENST00000381306.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.204C>T
  hgvsp: ENST00000543771.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.322C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.204C>T
  hgvsp: ENST00000401787.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu68Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

9-6805667-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805667
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805667
    reference: chr 9
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-216A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.279A>G
  hgvsp: ENST00000535193.1:c.279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.213A>G
  hgvsp: ENST00000381309.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.331A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.51A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.213A>G
  hgvsp: ENST00000381306.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.213A>G
  hgvsp: ENST00000401787.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.213A>G
  hgvsp: ENST00000438023.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.213A>G
  hgvsp: ENST00000543771.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8964A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala71Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

9-6805668-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805668
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805668
    reference: chr 9
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.214C>G
  hgvsp: ENSP00000404756.1:p.Pro72Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.332C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-215C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.52C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8963C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.280C>G
  hgvsp: ENSP00000442382.1:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.214C>G
  hgvsp: ENSP00000370707.3:p.Pro72Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.214C>G
  hgvsp: ENSP00000445427.1:p.Pro72Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.214C>G
  hgvsp: ENSP00000370710.3:p.Pro72Ala
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.214C>G
  hgvsp: ENSP00000383990.3:p.Pro72Ala
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro72Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

9-6805683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805683
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805683
    reference: chr 9
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.229G>A
  hgvsp: ENSP00000383990.3:p.Val77Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8948G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.229G>A
  hgvsp: ENSP00000370710.3:p.Val77Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.347G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.229G>A
  hgvsp: ENSP00000404756.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-200G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.295G>A
  hgvsp: ENSP00000442382.1:p.Val99Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.229G>A
  hgvsp: ENSP00000370707.3:p.Val77Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.229G>A
  hgvsp: ENSP00000445427.1:p.Val77Ile
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.67G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val77Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

9-6805685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805685
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805685
    reference: chr 9
allele count: 11
allele frequency: 9.061254077564335e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-198C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.231C>T
  hgvsp: ENST00000381309.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.231C>T
  hgvsp: ENST00000401787.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8946C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.231C>T
  hgvsp: ENST00000438023.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.69C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.349C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.231C>T
  hgvsp: ENST00000381306.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.297C>T
  hgvsp: ENST00000535193.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.231C>T
  hgvsp: ENST00000543771.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val77Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-6805691-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805691
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805691
    reference: chr 9
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.355G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8940G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.303G>T
  hgvsp: ENST00000535193.1:c.303G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.237G>T
  hgvsp: ENST00000543771.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-192G>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.237G>T
  hgvsp: ENST00000381306.3:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.237G>T
  hgvsp: ENST00000401787.3:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.237G>T
  hgvsp: ENST00000438023.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.237G>T
  hgvsp: ENST00000381309.3:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.75G>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly79Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/9-6805697-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805697
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805697
    reference: chr 9
allele count: 12
allele frequency: 9.884678747940691e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.81A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.309A>C
  hgvsp: ENST00000535193.1:c.309A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.243A>C
  hgvsp: ENST00000401787.3:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.243A>C
  hgvsp: ENST00000438023.1:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-186A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.243A>C
  hgvsp: ENST00000381309.3:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.243A>C
  hgvsp: ENST00000381306.3:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.243A>C
  hgvsp: ENST00000543771.1:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.361A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8934A>C
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser81Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

9-6805718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805718
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805718
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.264C>T
  hgvsp: ENST00000543771.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.264C>T
  hgvsp: ENST00000401787.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8913C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-165C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.264C>T
  hgvsp: ENST00000438023.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.264C>T
  hgvsp: ENST00000381309.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.330C>T
  hgvsp: ENST00000535193.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.264C>T
  hgvsp: ENST00000381306.3:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.382C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.102C>T
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn88Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-6805732-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805732
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805732
    reference: chr 9
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.278C>G
  hgvsp: ENSP00000445427.1:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.278C>G
  hgvsp: ENSP00000404756.1:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-151C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.278C>G
  hgvsp: ENSP00000370710.3:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8899C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.396C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.344C>G
  hgvsp: ENSP00000442382.1:p.Ala115Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.278C>G
  hgvsp: ENSP00000370707.3:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.278C>G
  hgvsp: ENSP00000383990.3:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.116C>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5054
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala93Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-6805733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805733
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805733
    reference: chr 9
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.279G>A
  hgvsp: ENST00000438023.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-150G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.117G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.279G>A
  hgvsp: ENST00000543771.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.279G>A
  hgvsp: ENST00000401787.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.279G>A
  hgvsp: ENST00000381306.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.279G>A
  hgvsp: ENST00000381309.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.345G>A
  hgvsp: ENST00000535193.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.397G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8898G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala93Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-6805734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805734
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805734
    reference: chr 9
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-149A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.118A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.280A>G
  hgvsp: ENSP00000383990.3:p.Met94Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.398A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.280A>G
  hgvsp: ENSP00000445427.1:p.Met94Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.280A>G
  hgvsp: ENSP00000370707.3:p.Met94Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.280A>G
  hgvsp: ENSP00000370710.3:p.Met94Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.280A>G
  hgvsp: ENSP00000404756.1:p.Met94Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8897A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.346A>G
  hgvsp: ENSP00000442382.1:p.Met116Val
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met94Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/9-6805743-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805743
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805743
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.289A>C
  hgvsp: ENSP00000370710.3:p.Lys97Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.289A>C
  hgvsp: ENSP00000383990.3:p.Lys97Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-140A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.407A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.289A>C
  hgvsp: ENSP00000370707.3:p.Lys97Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.355A>C
  hgvsp: ENSP00000442382.1:p.Lys119Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.289A>C
  hgvsp: ENSP00000404756.1:p.Lys97Gln
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.127A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8888A>C
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.289A>C
  hgvsp: ENSP00000445427.1:p.Lys97Gln
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys97Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

9-6805744-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805744
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805744
    reference: chr 9
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-139A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.290A>G
  hgvsp: ENSP00000370710.3:p.Lys97Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.290A>G
  hgvsp: ENSP00000404756.1:p.Lys97Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.290A>G
  hgvsp: ENSP00000370707.3:p.Lys97Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.408A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.128A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.356A>G
  hgvsp: ENSP00000442382.1:p.Lys119Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.290A>G
  hgvsp: ENSP00000445427.1:p.Lys97Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.290A>G
  hgvsp: ENSP00000383990.3:p.Lys97Arg
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8887A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys97Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-6805751-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805751
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805751
    reference: chr 9
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.297C>A
  hgvsp: ENSP00000370710.3:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.297C>A
  hgvsp: ENSP00000445427.1:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.297C>A
  hgvsp: ENSP00000383990.3:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-132C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8880C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.297C>A
  hgvsp: ENSP00000370707.3:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.363C>A
  hgvsp: ENSP00000442382.1:p.Phe121Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.415C>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.297C>A
  hgvsp: ENSP00000404756.1:p.Phe99Leu
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.135C>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe99Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

9-6805753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805753
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.299G>A
  hgvsp: ENSP00000445427.1:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.299G>A
  hgvsp: ENSP00000383990.3:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.299G>A
  hgvsp: ENSP00000404756.1:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.299G>A
  hgvsp: ENSP00000370707.3:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-130G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.417G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.299G>A
  hgvsp: ENSP00000370710.3:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.365G>A
  hgvsp: ENSP00000442382.1:p.Arg122Lys
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8878G>A
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.137G>A
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg100Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-6805758-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805758
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805758
    reference: chr 9
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.304C>G
  hgvsp: ENSP00000370707.3:p.Leu102Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.304C>G
  hgvsp: ENSP00000370710.3:p.Leu102Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8873C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.142C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.370C>G
  hgvsp: ENSP00000442382.1:p.Leu124Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.422C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.304C>G
  hgvsp: ENSP00000383990.3:p.Leu102Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-125C>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.304C>G
  hgvsp: ENSP00000445427.1:p.Leu102Val
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.304C>G
  hgvsp: ENSP00000404756.1:p.Leu102Val
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu102Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

9-6805758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805758
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805758
    reference: chr 9
allele count: 6
allele frequency: 4.944783253667381e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.142C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.370C>T
  hgvsp: ENST00000535193.1:c.370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.304C>T
  hgvsp: ENST00000381306.3:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.304C>T
  hgvsp: ENST00000438023.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.304C>T
  hgvsp: ENST00000401787.3:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-125C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.422C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.304C>T
  hgvsp: ENST00000381309.3:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8873C>T
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.304C>T
  hgvsp: ENST00000543771.1:c.304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu102Leu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

9-6805765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805765
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805765
    reference: chr 9
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000480996
  gene symbol: KDM4C
  hgvsc: ENST00000480996.1:n.149A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370707
  ensembl transcript: ENST00000381306
  gene symbol: KDM4C
  hgvsc: ENST00000381306.3:c.311A>G
  hgvsp: ENSP00000370707.3:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000370710
  ensembl transcript: ENST00000381309
  gene symbol: KDM4C
  hgvsc: ENST00000381309.3:c.311A>G
  hgvsp: ENSP00000370710.3:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000409353
  ensembl transcript: ENST00000442236
  gene symbol: KDM4C
  hgvsc: ENST00000442236.2:c.-223-8866A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000442382
  ensembl transcript: ENST00000535193
  gene symbol: KDM4C
  hgvsc: ENST00000535193.1:c.377A>G
  hgvsp: ENSP00000442382.1:p.Asn126Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107077
  ensembl transcript: ENST00000489243
  gene symbol: KDM4C
  hgvsc: ENST00000489243.1:n.429A>G
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000445427
  ensembl transcript: ENST00000543771
  gene symbol: KDM4C
  hgvsc: ENST00000543771.1:c.311A>G
  hgvsp: ENSP00000445427.1:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000383990
  ensembl transcript: ENST00000401787
  gene symbol: KDM4C
  hgvsc: ENST00000401787.3:c.311A>G
  hgvsp: ENSP00000383990.3:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.311A>G
  hgvsp: ENSP00000404756.1:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/17071
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000440656
  ensembl transcript: ENST00000536108
  gene symbol: KDM4C
  hgvsc: ENST00000536108.1:c.-118A>G
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn104Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

9-6805767-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6805767
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 6805767
    reference: chr 9
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107077
  ensembl protein: ENSP00000404756
  ensembl transcript: ENST00000438023
  gene symbol: KDM4C
  hgvsc: ENST00000438023.1:c.313A>T
  hgvsp: ENSP00000404756.1:p.Ser105Cys
  variant of: http://identifiers.org/hgnc/17071
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser105Cys
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 2.613089e6

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e0

FS
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.354e1

GenotypeQuality
all individuals: 28946
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.246e1

DP
type: SiteQuality
SIO_000300: 2.613028e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.561e0

FS
type: SiteQuality
SIO_000300: 1.199e0

GenotypeQuality
all individuals: 3998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28944
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.254e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.924e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 2.612822e6

GenotypeQuality
all individuals: 3998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3610
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

DP
type: SiteQuality
SIO_000300: 2.612715e6

QD
type: SiteQuality
SIO_000300: 1.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.369999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.232e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.78e-1

GenotypeQuality
all individuals: 12029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28944
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3999
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 2.612688e6

QD
type: SiteQuality
SIO_000300: 1.134e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3999
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 3.336e0

DP
type: SiteQuality
SIO_000300: 2.612603e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28940
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.612486e6

QD
type: SiteQuality
SIO_000300: 1.436e1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.346e0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 2.612291e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.749e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 3.442e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.407e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.447e1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.612243e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 3.956e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

QD
type: SiteQuality
SIO_000300: 1.603e1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28938
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.428e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

DP
type: SiteQuality
SIO_000300: 2.611919e6

FS
type: SiteQuality
SIO_000300: 1.829e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.127e0

QD
type: SiteQuality
SIO_000300: 1.37e1

GenotypeQuality
all individuals: 12032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.604e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.550000000000001e0

DP
type: SiteQuality
SIO_000300: 2.611795e6

VQSLOD
type: SiteQuality
SIO_000300: -5.919e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.615e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28937
bin: 9.75e1
variant carriers: 21

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.727414061150458e-3
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 3.408e0

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.045e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.611624e6

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.107e0

FS
type: SiteQuality
SIO_000300: 9.962999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.316e0

QD
type: SiteQuality
SIO_000300: 1.237e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.609505e6

GenotypeQuality
all individuals: 28928
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.651e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e0

FS
type: SiteQuality
SIO_000300: 1.1364e1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.442e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.60935e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28926
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.55e1

DP
type: SiteQuality
SIO_000300: 2.609127e6

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

FS
type: SiteQuality
SIO_000300: 9.804e0

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28927
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.07e0

QD
type: SiteQuality
SIO_000300: 1.376e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.609055e6

FS
type: SiteQuality
SIO_000300: 7.119e0

MQRankSum
type: SiteQuality
SIO_000300: -3.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28926
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.608931e6

FS
type: SiteQuality
SIO_000300: 1.4777e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.836e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.001e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

DP
type: SiteQuality
SIO_000300: 2.608359e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 9.18e-1

GenotypeQuality
all individuals: 11948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.318e0

QD
type: SiteQuality
SIO_000300: 1.154e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.607924e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.948e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28924
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.607161e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.072e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.865e1

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

FS
type: SiteQuality
SIO_000300: 6.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.324e0

DP
type: SiteQuality
SIO_000300: 2.60683e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.48e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.653e0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.606307e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28923
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.599e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 1.296e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
type: SiteQuality
SIO_000300: 2.606176e6

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 1.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e0

DP
type: SiteQuality
SIO_000300: 2.60614e6

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 28924
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.065016982047549e-4
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 2.663e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.60604e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28913
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92975685063682e-4
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
SIO_000300: 5.608e0

QD
type: SiteQuality
SIO_000300: 1.195e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.625e0

VQSLOD
type: SiteQuality
SIO_000300: 5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.604394e6

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.596448e6

FS
type: SiteQuality
SIO_000300: 8.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.689922480620155e-5
allele num: 10320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 2.595539e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 2.235e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28955
bin: 9.75e1
variant carriers: 169

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 113
allele frequency: 6.90962455668338e-3
allele num: 16354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597402597402597e-4
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 7.672403417980503e-4
allele num: 66472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.333e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 2.59014e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28842
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.669275929549902e-4
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.507e0

QD
type: SiteQuality
SIO_000300: 1.29e1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

DP
type: SiteQuality
SIO_000300: 2.583878e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.82e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28827
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4009
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.467406380027739e-4
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 2.56444e6

FS
type: SiteQuality
SIO_000300: 1.0665e1

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4009
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.55784e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.427e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28824
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

DP
type: SiteQuality
SIO_000300: 2.55058e6

FS
type: SiteQuality
SIO_000300: 3.951e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 4007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28824
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.828864537188156e-4
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.078e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 3.951e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 2.55058e6

GenotypeQuality
all individuals: 2714
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.253165697805416e-5
allele num: 44382
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

DP
type: SiteQuality
SIO_000300: 8.34253e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.499e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

QD
type: SiteQuality
SIO_000300: 1.838e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 1802
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.43464e5

MQ
type: SiteQuality
SIO_000300: 5.682e1

VQSLOD
type: SiteQuality
SIO_000300: -9.546e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 342
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 370
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.079913606911447e-4
allele num: 9260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.777374355054462e-4
allele num: 10466
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.234e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.79839e5

GenotypeQuality
all individuals: 2872
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11004
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1681
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189237707430273e-5
allele num: 45678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.501e0

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.371e1

DP
type: SiteQuality
SIO_000300: 9.01321e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

GenotypeQuality
all individuals: 1474
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7535
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4845
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.845220030349014e-4
allele num: 10544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.093804690234512e-4
allele num: 45712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 5.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 9.23333e5

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.838167714422264e-5
allele num: 54402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.063e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.212841e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.496e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.682e-1

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37846
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.632422530911312e-5
allele num: 13102
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.69e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.227747e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4679
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

VQSLOD
type: SiteQuality
SIO_000300: -1.289e0

FS
type: SiteQuality
SIO_000300: 4.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 1.33518e6

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.659832246039143e-5
allele num: 64380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.391e0

QD
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 1.388289e6

VQSLOD
type: SiteQuality
SIO_000300: -3.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 1.399793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 1.333e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 1258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.448e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.429586e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.758e0

VQSLOD
type: SiteQuality
SIO_000300: -3.403e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5014
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.429831e6

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 50237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.347e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.429954e6

GenotypeQuality
all individuals: 50267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.942e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.456e1

DP
type: SiteQuality
SIO_000300: 1.430735e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.579e0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5029
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 1.431425e6

FS
type: SiteQuality
SIO_000300: 4.405e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 1.431894e6

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

GenotypeQuality
all individuals: 50281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.011e0

FS
type: SiteQuality
SIO_000300: 4.929e0

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 1.43215e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.283e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.011e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.43215e6

FS
type: SiteQuality
SIO_000300: 4.929e0

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5040
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2099e1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

QD
type: SiteQuality
SIO_000300: 1.125e1

DP
type: SiteQuality
SIO_000300: 1.432107e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 1.6517e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

DP
type: SiteQuality
SIO_000300: 1.432037e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.47e0

FS
type: SiteQuality
SIO_000300: 9.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.56e0

VQSLOD
type: SiteQuality
SIO_000300: -1.587e-1

DP
type: SiteQuality
SIO_000300: 1.432282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348799568384138e-4
allele num: 66726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.725e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.738e0

QD
type: SiteQuality
SIO_000300: 1.273e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.433128e6

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50269
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.004e0

DP
type: SiteQuality
SIO_000300: 1.43269e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.377e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.318e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.661821705426356e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 2.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.433307e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.394e0

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 5.208e0

QD
type: SiteQuality
SIO_000300: 1.323e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.432976e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.563e0

QD
type: SiteQuality
SIO_000300: 1.294e1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

DP
type: SiteQuality
SIO_000300: 1.433228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.83e0

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 1.433022e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

MQRankSum
type: SiteQuality
SIO_000300: 9.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.43301e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

FS
type: SiteQuality
SIO_000300: 1.891e0

VQSLOD
type: SiteQuality
SIO_000300: -2.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 6.56e0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.43303e6

QD
type: SiteQuality
SIO_000300: 1.201e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 4.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.126e0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.432893e6

QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

QD
type: SiteQuality
SIO_000300: 1.276e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.432827e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.485e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.816e0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5051
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

FS
type: SiteQuality
SIO_000300: 1.363e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 1.432691e6

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.494e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.892e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

DP
type: SiteQuality
SIO_000300: 1.432783e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.032876379958753e-4
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.892e0

VQSLOD
type: SiteQuality
SIO_000300: -3.494e-1

DP
type: SiteQuality
SIO_000300: 1.432783e6

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 1.0123e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 5037
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

FS
type: SiteQuality
SIO_000300: 1.981e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

DP
type: SiteQuality
SIO_000300: 1.432234e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1