10-114925684-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925684
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925684
    reference: chr 10
allele count: 1
allele frequency: 9.084302325581395e-6
allele num: 110080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*291G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.601G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1762G>C
  hgvsp: ENSP00000446238.1:p.Gly588Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.642G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.146G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1813G>C
  hgvsp: ENSP00000348274.4:p.Gly605Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1813G>C
  hgvsp: ENSP00000440547.1:p.Gly605Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1744G>C
  hgvsp: ENSP00000358404.4:p.Gly582Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*401G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*291G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1762G>C
  hgvsp: ENSP00000444972.1:p.Gly588Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*426G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.961G>C
  hgvsp: ENSP00000443883.1:p.Gly321Arg
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly588Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

10-114925684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925684
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925684
    reference: chr 10
allele count: 2
allele frequency: 1.816860465116279e-5
allele num: 110080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1762G>A
  hgvsp: ENSP00000446238.1:p.Gly588Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*291G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1813G>A
  hgvsp: ENSP00000348274.4:p.Gly605Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*291G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1813G>A
  hgvsp: ENSP00000440547.1:p.Gly605Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.146G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.961G>A
  hgvsp: ENSP00000443883.1:p.Gly321Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*426G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1762G>A
  hgvsp: ENSP00000444972.1:p.Gly588Arg
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*401G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.601G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.642G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1744G>A
  hgvsp: ENSP00000358404.4:p.Gly582Arg
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly588Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

10-114925686-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925686
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925686
    reference: chr 10
allele count: 9
allele frequency: 8.193139611098974e-5
allele num: 109848
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1764G>C
  hgvsp: ENST00000543371.1:c.1764G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.603G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.148G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*403G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.963G>C
  hgvsp: ENST00000542695.1:c.963G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1764G>C
  hgvsp: ENST00000536810.1:c.1764G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1815G>C
  hgvsp: ENST00000355995.4:c.1815G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1746G>C
  hgvsp: ENST00000369397.4:c.1746G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*293G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1815G>C
  hgvsp: ENST00000545257.1:c.1815G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*293G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*428G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.644G>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly588Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

10-114925687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925687
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925687
    reference: chr 10
allele count: 3
allele frequency: 2.755478810367948e-5
allele num: 108874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1816A>G
  hgvsp: ENSP00000348274.4:p.Thr606Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.964A>G
  hgvsp: ENSP00000443883.1:p.Thr322Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.604A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*294A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1816A>G
  hgvsp: ENSP00000440547.1:p.Thr606Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*404A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1765A>G
  hgvsp: ENSP00000444972.1:p.Thr589Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1747A>G
  hgvsp: ENSP00000358404.4:p.Thr583Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.149A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1765A>G
  hgvsp: ENSP00000446238.1:p.Thr589Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.645A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*294A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*429A>G
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr589Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS

10-114925688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925688
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925688
    reference: chr 10
allele count: 3
allele frequency: 2.744689026733271e-5
allele num: 109302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*405C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1817C>T
  hgvsp: ENSP00000348274.4:p.Thr606Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*295C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1766C>T
  hgvsp: ENSP00000444972.1:p.Thr589Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1766C>T
  hgvsp: ENSP00000446238.1:p.Thr589Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.605C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.965C>T
  hgvsp: ENSP00000443883.1:p.Thr322Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1748C>T
  hgvsp: ENSP00000358404.4:p.Thr583Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*295C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1817C>T
  hgvsp: ENSP00000440547.1:p.Thr606Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.150C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.646C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*430C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr589Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-114925693-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925693
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925693
    reference: chr 10
allele count: 1
allele frequency: 9.127418765972983e-6
allele num: 109560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.970C>G
  hgvsp: ENSP00000443883.1:p.Pro324Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000435694
  ensembl transcript: ENST00000470254
  gene symbol: TCF7L2
  hgvsc: ENST00000470254.1:c.*435C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1753C>G
  hgvsp: ENSP00000358404.4:p.Pro585Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.651C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1822C>G
  hgvsp: ENSP00000348274.4:p.Pro608Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1771C>G
  hgvsp: ENSP00000446238.1:p.Pro591Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1822C>G
  hgvsp: ENSP00000440547.1:p.Pro608Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*410C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*300C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.155C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*300C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1771C>G
  hgvsp: ENSP00000444972.1:p.Pro591Ala
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.610C>G
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro591Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

10-114925701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925701
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925701
    reference: chr 10
allele count: 2
allele frequency: 1.841790220093931e-5
allele num: 108590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*308G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.978G>A
  hgvsp: ENST00000542695.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1779G>A
  hgvsp: ENST00000536810.1:c.1779G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1761G>A
  hgvsp: ENST00000369397.4:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.163G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1830G>A
  hgvsp: ENST00000545257.1:c.1830G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1830G>A
  hgvsp: ENST00000355995.4:c.1830G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.618G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.659G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1779G>A
  hgvsp: ENST00000543371.1:c.1779G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*418G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro593Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-114925706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925706
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925706
    reference: chr 10
allele count: 3
allele frequency: 2.767783005812344e-5
allele num: 108390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1835C>T
  hgvsp: ENSP00000348274.4:p.Ser612Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.983C>T
  hgvsp: ENSP00000443883.1:p.Ser328Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1766C>T
  hgvsp: ENSP00000358404.4:p.Ser589Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1784C>T
  hgvsp: ENSP00000444972.1:p.Ser595Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.664C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1835C>T
  hgvsp: ENSP00000440547.1:p.Ser612Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.168C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*423C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.623C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1784C>T
  hgvsp: ENSP00000446238.1:p.Ser595Leu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*313C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser595Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

10-114925710-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925710
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925710
    reference: chr 10
allele count: 1
allele frequency: 9.249667011987568e-6
allele num: 108112
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.172C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.668C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1839C>G
  hgvsp: ENST00000355995.4:c.1839C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1839C>G
  hgvsp: ENST00000545257.1:c.1839C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1788C>G
  hgvsp: ENST00000543371.1:c.1788C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1770C>G
  hgvsp: ENST00000369397.4:c.1770C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*427C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.627C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1788C>G
  hgvsp: ENST00000536810.1:c.1788C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.987C>G
  hgvsp: ENST00000542695.1:c.987C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*317C>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*317C>G
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu596Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

10-114925710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925710
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925710
    reference: chr 10
allele count: 3
allele frequency: 2.774900103596271e-5
allele num: 108112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1839C>T
  hgvsp: ENST00000355995.4:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*317C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.668C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1788C>T
  hgvsp: ENST00000536810.1:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1788C>T
  hgvsp: ENST00000543371.1:c.1788C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.987C>T
  hgvsp: ENST00000542695.1:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*317C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1839C>T
  hgvsp: ENST00000545257.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1770C>T
  hgvsp: ENST00000369397.4:c.1770C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*427C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.627C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.172C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu596Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-114925711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925711
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925711
    reference: chr 10
allele count: 1
allele frequency: 9.263891204861689e-6
allele num: 107946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.669G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1771G>A
  hgvsp: ENSP00000358404.4:p.Val591Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*428G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.628G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1840G>A
  hgvsp: ENSP00000440547.1:p.Val614Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1840G>A
  hgvsp: ENSP00000348274.4:p.Val614Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1789G>A
  hgvsp: ENSP00000446238.1:p.Val597Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.988G>A
  hgvsp: ENSP00000443883.1:p.Val330Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*318G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*318G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1789G>A
  hgvsp: ENSP00000444972.1:p.Val597Ile
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.173G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val597Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-114925717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925717
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925717
    reference: chr 10
allele count: 2
allele frequency: 1.856699901594905e-5
allele num: 107718
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1795A>G
  hgvsp: ENSP00000444972.1:p.Lys599Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*434A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1777A>G
  hgvsp: ENSP00000358404.4:p.Lys593Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1846A>G
  hgvsp: ENSP00000348274.4:p.Lys616Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.634A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000480888
  gene symbol: TCF7L2
  hgvsc: ENST00000480888.1:n.179A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1795A>G
  hgvsp: ENSP00000446238.1:p.Lys599Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*324A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.994A>G
  hgvsp: ENSP00000443883.1:p.Lys332Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*324A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1846A>G
  hgvsp: ENSP00000440547.1:p.Lys616Glu
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.675A>G
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys599Glu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

10-114925722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925722
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925722
    reference: chr 10
allele count: 1
allele frequency: 9.290399301361972e-6
allele num: 107638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1851T>C
  hgvsp: ENST00000355995.4:c.1851T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1782T>C
  hgvsp: ENST00000369397.4:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1851T>C
  hgvsp: ENST00000545257.1:c.1851T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.639T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1800T>C
  hgvsp: ENST00000536810.1:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1800T>C
  hgvsp: ENST00000543371.1:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*329T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.999T>C
  hgvsp: ENST00000542695.1:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*329T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.680T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*439T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser600Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

10-114925724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925724
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925724
    reference: chr 10
allele count: 1
allele frequency: 9.302671727320086e-6
allele num: 107496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1784T>C
  hgvsp: ENSP00000358404.4:p.Leu595Ser
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1853T>C
  hgvsp: ENSP00000348274.4:p.Leu618Ser
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1802T>C
  hgvsp: ENSP00000446238.1:p.Leu601Ser
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1853T>C
  hgvsp: ENSP00000440547.1:p.Leu618Ser
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.641T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1802T>C
  hgvsp: ENSP00000444972.1:p.Leu601Ser
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*331T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*441T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.682T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*331T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.1001T>C
  hgvsp: ENSP00000443883.1:p.Leu334Ser
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu601Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/10-114925728-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925728
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925728
    reference: chr 10
allele count: 1
allele frequency: 9.318101343670214e-6
allele num: 107318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.686A>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*335A>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.1857A>C
  hgvsp: ENSP00000348274.4:p.Glu619Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.1857A>C
  hgvsp: ENSP00000440547.1:p.Glu619Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.1788A>C
  hgvsp: ENSP00000358404.4:p.Glu596Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.1806A>C
  hgvsp: ENSP00000444972.1:p.Glu602Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*335A>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*445A>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000443883
  ensembl transcript: ENST00000542695
  gene symbol: TCF7L2
  hgvsc: ENST00000542695.1:c.1005A>C
  hgvsp: ENSP00000443883.1:p.Glu335Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.1806A>C
  hgvsp: ENSP00000446238.1:p.Glu602Asp
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.645A>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu602Asp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-114925733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925733
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925733
    reference: chr 10
allele count: 2
allele frequency: 1.869857890800299e-5
allele num: 106960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.691T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.650T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*340T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*2T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*450T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*2T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*340T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*2T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

10-114925735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925735
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925735
    reference: chr 10
allele count: 3
allele frequency: 2.805573739829795e-5
allele num: 106930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*342T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.652T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*342T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*4T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.693T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*4T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*452T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

10-114925737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925737
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925737
    reference: chr 10
allele count: 1
allele frequency: 9.3562874251497e-6
allele num: 106880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*6G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*344G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.695G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*454G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*6G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.654G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*344G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

10-114925738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925738
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925738
    reference: chr 10
allele count: 5
allele frequency: 4.681998651584388e-5
allele num: 106792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.696C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*345C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*345C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*455C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.655C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4234
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

10-114925739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925739
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925739
    reference: chr 10
allele count: 4
allele frequency: 3.745879532514235e-5
allele num: 106784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.697G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*346G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*456G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*346G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.656G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-114925741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925741
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925741
    reference: chr 10
allele count: 2
allele frequency: 1.877440672874737e-5
allele num: 106528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*348C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.699C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*458C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*348C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*10C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*10C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.658C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

10-114925742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925742
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925742
    reference: chr 10
allele count: 1
allele frequency: 9.389142395733574e-6
allele num: 106506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*11G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.700G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.659G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*349G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*459G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*11G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/10-114925747-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925747
    reference: chr 10
allele count: 1
allele frequency: 9.415309292910272e-6
allele num: 106210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.664C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*16C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*16C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*354C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*16C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*16C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*16C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.705C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*464C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*354C>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

10-114925747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925747
    reference: chr 10
allele count: 1
allele frequency: 9.415309292910272e-6
allele num: 106210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.705C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*16C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.664C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*354C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*354C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*464C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*16C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/10-114925750-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925750
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925750
    reference: chr 10
allele count: 61
allele frequency: 5.755911604295232e-4
allele num: 105978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.708C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*19C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*19C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*19C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*19C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*357C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*467C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.667C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*19C>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*357C>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12630
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/10-114925750-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925750
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925751
    reference: chr 10
allele count: 21
allele frequency: 1.981543339183604e-4
allele num: 105978
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*467_*468insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*19_*20insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*19_*20insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*19_*20insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*357_*358insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.667_668insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.708_709insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*19_*20insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*19_*20insA
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*357_*358insA
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

10-114925750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925750
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925750
    reference: chr 10
allele count: 3
allele frequency: 2.83077619883372e-5
allele num: 105978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*357C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.708C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*357C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*467C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*19C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.667C>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*19C>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

10-114925751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925751
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925751
    reference: chr 10
allele count: 1
allele frequency: 9.444832732012316e-6
allele num: 105878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.709G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*20G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*20G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*358G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*358G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*468G>A
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.668G>A
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

10-114925751-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925751
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925751
    reference: chr 10
allele count: 1
allele frequency: 9.444832732012316e-6
allele num: 105878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*358G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*20G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*20G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*20G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*20G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*20G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.668G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*358G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*468G>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.709G>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

10-114925753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925753
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925753
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 105808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*360T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*470T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*22T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.670T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.711T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*22T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*360T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

10-114925758-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925758
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925758
    reference: chr 10
allele count: 5412
allele frequency: 5.114731788454996e-2
allele num: 105812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*475T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.716T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*365T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.675T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*365T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*27T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*27T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 3.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 5.25e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.75e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 7.5e0
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 4.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.25e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.75e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 3.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 137
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 36
num of homozygotes: 1335
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

10-114925763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925763
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925763
    reference: chr 10
allele count: 6
allele frequency: 5.688605722737357e-5
allele num: 105474
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*32A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.680A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*32A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*32A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*370A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*480A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*370A>G
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.721A>G
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12819
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

10-114925767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925767
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925767
    reference: chr 10
allele count: 1
allele frequency: 9.498299804335023e-6
allele num: 105282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*484T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.725T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*374T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*36T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*36T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*36T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.684T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*36T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*36T>C
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*374T>C
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

10-114925771-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114925771
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 114925771
    reference: chr 10
allele count: 1
allele frequency: 9.51782688976453e-6
allele num: 105066
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000444972
  ensembl transcript: ENST00000543371
  gene symbol: TCF7L2
  hgvsc: ENST00000543371.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358404
  ensembl transcript: ENST00000369397
  gene symbol: TCF7L2
  hgvsc: ENST00000369397.4:c.*40G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000466338
  gene symbol: TCF7L2
  hgvsc: ENST00000466338.1:n.729G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446172
  ensembl transcript: ENST00000538897
  gene symbol: TCF7L2
  hgvsc: ENST00000538897.1:c.*378G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000440547
  ensembl transcript: ENST00000545257
  gene symbol: TCF7L2
  hgvsc: ENST00000545257.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000347949
  ensembl transcript: ENST00000355717
  gene symbol: TCF7L2
  hgvsc: ENST00000355717.4:c.*378G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148737
  ensembl transcript: ENST00000476887
  gene symbol: TCF7L2
  hgvsc: ENST00000476887.1:n.688G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000446238
  ensembl transcript: ENST00000536810
  gene symbol: TCF7L2
  hgvsc: ENST00000536810.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000348274
  ensembl transcript: ENST00000355995
  gene symbol: TCF7L2
  hgvsc: ENST00000355995.4:c.*40G>T
  variant of: http://identifiers.org/hgnc/11641
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148737
  ensembl protein: ENSP00000358393
  ensembl transcript: ENST00000369386
  gene symbol: TCF7L2
  hgvsc: ENST00000369386.1:c.*488G>T
  variant of: http://identifiers.org/hgnc/11641
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/10-115312830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312830
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312830
    reference: chr 10
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-157C>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2110C>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-51C>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-115312830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312830
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312830
    reference: chr 10
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-157C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-51C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2110C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34270
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

10-115312838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312838
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312838
    reference: chr 10
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2118G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-149G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-43G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

10-115312841-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312841
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312841
    reference: chr 10
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2121A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-40A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-146A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34277
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 102
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genotype quality: GenotypeQuality
  all individuals: 171
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genotype quality: GenotypeQuality
  all individuals: 199
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

10-115312846-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312846
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312846
    reference: chr 10
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-35A>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-141A>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2126A>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.-35A>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

10-115312865-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312865
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312865
    reference: chr 10
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.-16T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-16T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-122T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2145T>C
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34279
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

10-115312878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312878
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312878
    reference: chr 10
allele count: 325
allele frequency: 2.67736514317725e-3
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.-3A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2158A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-109A>G
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 9.75e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34366
  bin: 9.75e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

10-115312883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312883
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312883
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.3G>A
  hgvsp: ENSP00000438373.1:p.Met1?
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-104G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.3G>A
  hgvsp: ENSP00000277903.4:p.Met1?
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2163G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34243
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

10-115312895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312895
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312895
    reference: chr 10
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.15G>A
  hgvsp: ENSP00000438373.1:p.Met5Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2175G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.15G>A
  hgvsp: ENSP00000277903.4:p.Met5Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-92G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34243
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met5Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-115312908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312908
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312908
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.28G>A
  hgvsp: ENSP00000438373.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.28G>A
  hgvsp: ENSP00000277903.4:p.Val10Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-79G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2188G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val10Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

10-115312915-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312915
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312915
    reference: chr 10
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.35T>A
  hgvsp: ENSP00000277903.4:p.Leu12Gln
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.35T>A
  hgvsp: ENSP00000438373.1:p.Leu12Gln
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-72T>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2195T>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu12Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

10-115312921-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312921
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312921
    reference: chr 10
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.41T>A
  hgvsp: ENSP00000438373.1:p.Met14Lys
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.41T>A
  hgvsp: ENSP00000277903.4:p.Met14Lys
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2201T>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-66T>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met14Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

10-115312923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312923
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312923
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2203G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.43G>A
  hgvsp: ENSP00000438373.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.43G>A
  hgvsp: ENSP00000277903.4:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-64G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 7511
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala15Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

10-115312924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312924
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312924
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.44C>T
  hgvsp: ENSP00000438373.1:p.Ala15Val
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-63C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.44C>T
  hgvsp: ENSP00000277903.4:p.Ala15Val
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2204C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala15Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-115312926-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312926
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312926
    reference: chr 10
allele count: 62
allele frequency: 5.106747496046389e-4
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-61C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.46C>G
  hgvsp: ENSP00000277903.4:p.Leu16Val
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.46C>G
  hgvsp: ENSP00000438373.1:p.Leu16Val
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2206C>G
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34283
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu16Val
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

10-115312939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312939
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312939
    reference: chr 10
allele count: 6
allele frequency: 4.942583653228331e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.59C>T
  hgvsp: ENSP00000277903.4:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.59C>T
  hgvsp: ENSP00000438373.1:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2219C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34243
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr20Ile
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

10-115312942-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312942
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312942
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2222C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.62C>G
  hgvsp: ENSP00000277903.4:p.Ala21Gly
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-45C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.62C>G
  hgvsp: ENSP00000438373.1:p.Ala21Gly
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34237
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala21Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-115312947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312947
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312947
    reference: chr 10
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-40G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.67G>T
  hgvsp: ENSP00000277903.4:p.Gly23Trp
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2227G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.67G>T
  hgvsp: ENSP00000438373.1:p.Gly23Trp
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34237
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly23Trp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-115312949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312949
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312949
    reference: chr 10
allele count: 8
allele frequency: 6.590111537637774e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69G>A
  hgvsp: ENST00000351270.3:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2229G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69G>A
  hgvsp: ENST00000541666.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34237
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7478
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: c.69G>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

10-115312949-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312949
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312949
    reference: chr 10
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2229G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69G>T
  hgvsp: ENST00000351270.3:c.69G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69G>T
  hgvsp: ENST00000541666.1:c.69G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3760
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2153
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genotype quality: GenotypeQuality
  all individuals: 34237
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2187
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genotype quality: GenotypeQuality
  all individuals: 3549
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 9.25e1
  variant carriers: 0
hgvs: c.69G>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

10-115312954-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312954
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312954
    reference: chr 10
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2234G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+5G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+5G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+5G>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34236
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.69+5G>T
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

10-115312956-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312956
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312956
    reference: chr 10
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+7G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+7G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2236G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+7G>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.25e1
  variant carriers: 0
hgvs: c.69+7G>T
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

10-115312959-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312959
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312959
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+10C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2239C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+10C>G
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+10C>G
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

10-115312959-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312959
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312958
    reference: chr 10
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+14delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+14delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+14delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2243delT
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

10-115312968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312968
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312968
    reference: chr 10
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2248T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+19T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+19T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+19T>C
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

10-115312988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312988
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312988
    reference: chr 10
allele count: 3
allele frequency: 2.472962279082036e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2268C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+39C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+39C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+39C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34220
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

10-115312989-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115312989
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115312989
    reference: chr 10
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.69+40G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-38+40G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-10+2269G>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.69+40G>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 107
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

10-115327198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327198
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327198
    reference: chr 10
allele count: 8
allele frequency: 6.837373081262179e-5
allele num: 117004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-50C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-50C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-50C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-50C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5007
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 9040
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 656
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

10-115327199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327199
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327199
    reference: chr 10
allele count: 10
allele frequency: 8.535773426430169e-5
allele num: 117154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-49G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-49G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-49G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-49G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16792
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

10-115327205-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327205
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327205
    reference: chr 10
allele count: 273
allele frequency: 2.316543343968502e-3
allele num: 117848
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-43G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-43G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-43G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-43G>C
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19907
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

10-115327206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327206
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327206
    reference: chr 10
allele count: 1
allele frequency: 8.483779014524229e-6
allele num: 117872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-42C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-42C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-42C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-42C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum

10-115327212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327212
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327212
    reference: chr 10
allele count: 3
allele frequency: 2.540091104600952e-5
allele num: 118106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-36C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-36C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-36C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-36C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23414
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9012
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

10-115327217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327217
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327217
    reference: chr 10
allele count: 39
allele frequency: 3.298153034300791e-4
allele num: 118248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-31C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-31C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-31C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-31C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25358
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9041
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-115327218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327218
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327218
    reference: chr 10
allele count: 6
allele frequency: 5.071251077640854e-5
allele num: 118314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-30G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-30G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-30G>A
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-30G>A
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25705
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5000
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

10-115327221-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327221
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327221
    reference: chr 10
allele count: 1
allele frequency: 8.430708010858751e-6
allele num: 118614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-27G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-27G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-27G>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-27G>C
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32985
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9012
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

10-115327234-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327234
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327233
    reference: chr 10
allele count: 6
allele frequency: 5.021508796009574e-5
allele num: 119486
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-10delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-10delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-10delT
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-10delT
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9020
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5306
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: GT
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

10-115327241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327241
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327241
    reference: chr 10
allele count: 1
allele frequency: 8.351428094204109e-6
allele num: 119740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000446135
  ensembl transcript: ENST00000537906
  gene symbol: HABP2
  hgvsc: ENST00000537906.1:c.-37-7T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000277903
  ensembl transcript: ENST00000351270
  gene symbol: HABP2
  hgvsc: ENST00000351270.3:c.70-7T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000438373
  ensembl transcript: ENST00000541666
  gene symbol: HABP2
  hgvsc: ENST00000541666.1:c.70-7T>C
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-7T>C
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: c.70-7T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

10-115327245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115327245
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 115327245
    reference: chr 10
allele count: 2
allele frequency: 1.668808303990121e-5
allele num: 119846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000148702
  ensembl transcript: ENST00000460714
  gene symbol: HABP2
  hgvsc: ENST00000460714.1:n.3C>T
  variant of: http://identifiers.org/hgnc/4798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148702
  ensembl protein: ENSP00000443283
  ensembl transcript: ENST00000542051
  gene symbol: HABP2
  hgvsc: ENST00000542051.1:c.-9-3C>T
  variant of: http://identifiers.org/hgnc/4798
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
hgvs: c.70-3C>T
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 3217
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 944
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7567
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 319
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.600460932748632e-5
allele num: 62482
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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MQ
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.170946441672781e-5
allele num: 10904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 5.0e-3

MQRankSum
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FS
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SIO_000300: 7.082e0

QD
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ReadPosRankSum
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SIO_000300: 1.65e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.443232841565106e-4
allele num: 62360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 802
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East Asian
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.967e1

QD
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VQSLOD
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MQRankSum
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SIO_000300: 2.53e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.346866932644919e-4
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617861187510112e-5
allele num: 61810
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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SIO_000300: 3.61e-1

ClippingRankSum
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SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
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SIO_000300: 5.95e-1

FS
type: SiteQuality
SIO_000300: 7.134e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.829362524146812e-5
allele num: 62120
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62374
num of homozygotes: 0

East Asian
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South Asian
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Latino
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African
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Other
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European (Finnish)
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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Other
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.031140441328109e-4
allele num: 9698
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.221649484536083e-5
allele num: 62080
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -4.0e-3

FS
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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SIO_000300: 5.881e1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 1.07342206955775e-4
allele num: 9316
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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DP
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.39e-1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele num: 9316
num of homozygotes: 0

South Asian
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allele num: 9550
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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FS
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SIO_000300: 1.928e0

BaseQRankSum
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SIO_000300: 2.99e0

ReadPosRankSum
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SIO_000300: 1.51e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61916
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele num: 9468
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Latino
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FS
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
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MQ
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DP
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
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allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.234780358413664e-5
allele num: 61828
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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East Asian
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South Asian
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
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allele frequency: 1.081782778018174e-4
allele num: 9244
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 61642
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East Asian
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European (Finnish)
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Latino
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African
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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South Asian
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ReadPosRankSum
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QD
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FS
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DP
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 61484
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Other
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African
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South Asian
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East Asian
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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FS
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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allele num: 8950
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European (Finnish)
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DP
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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Latino
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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DP
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QD
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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FS
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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DP
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12824
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61060
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.14414e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.827e0

FS
type: SiteQuality
SIO_000300: 5.249e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637733377006223e-5
allele num: 61060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.249e0

DP
type: SiteQuality
SIO_000300: 2.14414e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.827e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 62

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6744
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.923844537815126e-5
allele num: 60928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

African
type: Population
allele count: 58
allele frequency: 6.352683461117196e-3
allele num: 9130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 2.140802e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

QD
type: SiteQuality
SIO_000300: 1.678e1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.64456981664316e-4
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.752464403066813e-3
allele num: 9130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.282563025210084e-5
allele num: 60928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.678e1

DP
type: SiteQuality
SIO_000300: 2.140802e6

GenotypeQuality
all individuals: 12630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.923844537815126e-5
allele num: 60928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

QD
type: SiteQuality
SIO_000300: 1.678e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.140802e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.642251855744597e-5
allele num: 60892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.536e-1

DP
type: SiteQuality
SIO_000300: 2.138894e6

FS
type: SiteQuality
SIO_000300: 4.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.458e0

QD
type: SiteQuality
SIO_000300: 1.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6739
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.100594320933304e-4
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.536e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.458e0

DP
type: SiteQuality
SIO_000300: 2.138894e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12490
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 2.135447e6

QD
type: SiteQuality
SIO_000300: 1.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 32

GenotypeQuality
all individuals: 2002
bin: 8.75e1
variant carriers: 33

GenotypeQuality
all individuals: 362
bin: 3.25e1
variant carriers: 42

GenotypeQuality
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bin: 2.25e1
variant carriers: 57

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 22

GenotypeQuality
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bin: 6.75e1
variant carriers: 21

GenotypeQuality
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bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 314
bin: 2.75e1
variant carriers: 28

GenotypeQuality
all individuals: 610
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 26

GenotypeQuality
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bin: 7.75e1
variant carriers: 35

GenotypeQuality
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bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 27

GenotypeQuality
all individuals: 15925
bin: 9.75e1
variant carriers: 3806

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 50

GenotypeQuality
all individuals: 4123
bin: 8.25e1
variant carriers: 34

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 2.219321148825065e-2
allele num: 766
num of homozygotes: 1

South Asian
type: Population
allele count: 6
allele frequency: 6.822833750284285e-4
allele num: 8794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 2.044045892127126e-3
allele num: 60664
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 4965
allele frequency: 5.350215517241379e-1
allele num: 9280
num of homozygotes: 1324

Latino
type: Population
allele count: 300
allele frequency: 2.646903123345686e-2
allele num: 11334
num of homozygotes: 8

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 8.23e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

VQSLOD
type: SiteQuality
SIO_000300: 1.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.826e-1

DP
type: SiteQuality
SIO_000300: 2.128986e6

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.900663344444077e-5
allele num: 60602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 2.037017e6

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

FS
type: SiteQuality
SIO_000300: 1.371e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 2089
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6929
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652510162937502e-5
allele num: 60514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

DP
type: SiteQuality
SIO_000300: 2.02666e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.618e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 1.275e1

MQ
type: SiteQuality
SIO_000300: 5.879e1

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

GenotypeQuality
all individuals: 3917
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12804
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19703136222169e-4
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 2.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.014392e6

QD
type: SiteQuality
SIO_000300: 9.84e0

GenotypeQuality
all individuals: 34270
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 2.891774e6

FS
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 2100
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.891774e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

FS
type: SiteQuality
SIO_000300: 5.178e0

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 2.896526e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.321e-1

DP
type: SiteQuality
SIO_000300: 2.897834e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.371e0

FS
type: SiteQuality
SIO_000300: 1.118e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 2144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34279
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21580547112462e-4
allele num: 16450
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 2.899979e6

GenotypeQuality
all individuals: 7359
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.905751e6

MQ
type: SiteQuality
SIO_000300: 5.846e1

FS
type: SiteQuality
SIO_000300: 5.635e0

QD
type: SiteQuality
SIO_000300: 1.474e1

VQSLOD
type: SiteQuality
SIO_000300: -1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 315
allele frequency: 4.721081502353047e-3
allele num: 66722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 2.926844e6

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 5.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

GenotypeQuality
all individuals: 3549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7492
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

Other
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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MQ
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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MQ
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MQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
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Other
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East Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Latino
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 3.75484496124031e-3
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 7.493106342165208e-5
allele num: 66728
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East Asian
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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East Asian
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European (Finnish)
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MQ
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QD
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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DP
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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ReadPosRankSum
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FS
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DP
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VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.802e0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495863805299125e-5
allele num: 66728
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.593e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 3.353e0

DP
type: SiteQuality
SIO_000300: 2.907261e6

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 7.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 2.907056e6

GenotypeQuality
all individuals: 3756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.364e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

DP
type: SiteQuality
SIO_000300: 2.907033e6

MQ
type: SiteQuality
SIO_000300: 6.045e1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7426
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.186e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

FS
type: SiteQuality
SIO_000300: 1.364e0

DP
type: SiteQuality
SIO_000300: 2.907033e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.045e1

GenotypeQuality
all individuals: 34233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.905736e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -9.11e-1

QD
type: SiteQuality
SIO_000300: 1.643e1

VQSLOD
type: SiteQuality
SIO_000300: -5.218e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 5.793e0

GenotypeQuality
all individuals: 3514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

FS
type: SiteQuality
SIO_000300: 6.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 2.897465e6

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34220
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.846e0

FS
type: SiteQuality
SIO_000300: 1.352e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 8.27e0

DP
type: SiteQuality
SIO_000300: 2.895996e6

VQSLOD
type: SiteQuality
SIO_000300: -3.507e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.185119123455217e-4
allele num: 15698
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.918666931164451e-5
allele num: 10082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088516894187411e-5
allele num: 64756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.509e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

DP
type: SiteQuality
SIO_000300: 1.705471e6

QD
type: SiteQuality
SIO_000300: 2.55e1

GenotypeQuality
all individuals: 4970
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 7.945967421533572e-4
allele num: 10068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543781647523774e-5
allele num: 64776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.355662895640016e-5
allele num: 15734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.355e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.709367e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 270

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 10
allele frequency: 1.534071733194244e-4
allele num: 65186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

African
type: Population
allele count: 242
allele frequency: 2.395091053048298e-2
allele num: 10104
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.871324184637319e-3
allele num: 11222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 1.736715e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.315523556902867e-5
allele num: 15834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.518e0

VQSLOD
type: SiteQuality
SIO_000300: 7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 2.292e0

DP
type: SiteQuality
SIO_000300: 1.734959e6

QD
type: SiteQuality
SIO_000300: 1.222e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27516
bin: 6.25e1
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GenotypeQuality
all individuals: 4861
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.665718855518038e-4
allele num: 11254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.02e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.762583e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 1987
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1054
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.944773175542406e-4
allele num: 10140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 3.543586109142452e-3
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.258811681772407e-4
allele num: 15888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.588699562543975e-5
allele num: 65378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

DP
type: SiteQuality
SIO_000300: 1.786072e6

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

GenotypeQuality
all individuals: 9013
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1014
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.205128205128205e-4
allele num: 6240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.058384561274735e-5
allele num: 65394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.854158454867954e-5
allele num: 10148
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.871540099361249e-5
allele num: 11272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.791914e6

QD
type: SiteQuality
SIO_000300: 7.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

GenotypeQuality
all individuals: 1760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5099
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.095e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 1.808478e6

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.996268656716418e-4
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 2.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.845299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 6.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.852331e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 1.084e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1