http://identifiers.org/exac.variant/12-6857963-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857963
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857963
    reference: chr 12
allele count: 240
allele frequency: 2.174503941288394e-3
allele num: 110370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.745T>G
  hgvsp: ENSP00000438671.1:p.Ter249GlyextTer?
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.745T>G
  hgvsp: ENSP00000403941.1:p.Ter249GlyextTer12
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.745T>G
  hgvsp: ENSP00000446317.1:p.Ter249GlyextTer?
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.745T>G
  hgvsp: ENSP00000203630.5:p.Ter249GlyextTer12
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.488T>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: stop lost
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36605
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8930
  bin: 6.75e1
  variant carriers: 10
hgvs: p.Ter249GlyextTer12
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

12-6857971-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857971
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857971
    reference: chr 12
allele count: 3
allele frequency: 2.616248648271532e-5
allele num: 114668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.737A>G
  hgvsp: ENSP00000438671.1:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.737A>G
  hgvsp: ENSP00000403941.1:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.737A>G
  hgvsp: ENSP00000203630.5:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.737A>G
  hgvsp: ENSP00000446317.1:p.Tyr246Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.480A>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr246Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

12-6857985-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857985
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857985
    reference: chr 12
allele count: 2
allele frequency: 1.72824997407625e-5
allele num: 115724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.723A>T
  hgvsp: ENST00000435120.1:c.723A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.723A>T
  hgvsp: ENST00000539187.1:c.723A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.466A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.723A>T
  hgvsp: ENST00000542154.1:c.723A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.723A>T
  hgvsp: ENST00000203630.5:c.723A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15506
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg241Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

12-6857988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857988
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857988
    reference: chr 12
allele count: 1
allele frequency: 8.622771013692961e-6
allele num: 115972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.463C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.720C>T
  hgvsp: ENST00000539187.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.720C>T
  hgvsp: ENST00000203630.5:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.720C>T
  hgvsp: ENST00000435120.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.720C>T
  hgvsp: ENST00000542154.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser240Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

12-6857989-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857989
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857989
    reference: chr 12
allele count: 7
allele frequency: 6.029285099052541e-5
allele num: 116100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.719C>G
  hgvsp: ENSP00000403941.1:p.Ser240Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.719C>G
  hgvsp: ENSP00000438671.1:p.Ser240Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.462C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.719C>G
  hgvsp: ENSP00000446317.1:p.Ser240Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.719C>G
  hgvsp: ENSP00000203630.5:p.Ser240Cys
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser240Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-6857990-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857990
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857990
    reference: chr 12
allele count: 2
allele frequency: 1.739342180787226e-5
allele num: 114986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.718T>C
  hgvsp: ENSP00000438671.1:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.718T>C
  hgvsp: ENSP00000446317.1:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.718T>C
  hgvsp: ENSP00000203630.5:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.461T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.718T>C
  hgvsp: ENSP00000403941.1:p.Ser240Pro
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser240Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

12-6857992-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857992
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857992
    reference: chr 12
allele count: 8
allele frequency: 6.866363402283066e-5
allele num: 116510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.716C>G
  hgvsp: ENSP00000446317.1:p.Pro239Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.716C>G
  hgvsp: ENSP00000403941.1:p.Pro239Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.459C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.716C>G
  hgvsp: ENSP00000438671.1:p.Pro239Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.716C>G
  hgvsp: ENSP00000203630.5:p.Pro239Arg
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro239Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

12-6857993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6857993
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6857993
    reference: chr 12
allele count: 1
allele frequency: 8.576182226719954e-6
allele num: 116602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.715C>T
  hgvsp: ENSP00000403941.1:p.Pro239Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.458C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.715C>T
  hgvsp: ENSP00000438671.1:p.Pro239Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.715C>T
  hgvsp: ENSP00000203630.5:p.Pro239Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.715C>T
  hgvsp: ENSP00000446317.1:p.Pro239Ser
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro239Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

12-6858000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858000
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858000
    reference: chr 12
allele count: 1
allele frequency: 8.541606163623007e-6
allele num: 117074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.708G>A
  hgvsp: ENST00000435120.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.708G>A
  hgvsp: ENST00000539187.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.708G>A
  hgvsp: ENST00000542154.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.708G>A
  hgvsp: ENST00000203630.5:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.451G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu236Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

12-6858009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858009
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858009
    reference: chr 12
allele count: 1
allele frequency: 8.514116404999489e-6
allele num: 117452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.699G>A
  hgvsp: ENST00000539187.1:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.442G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.699G>A
  hgvsp: ENST00000435120.1:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.699G>A
  hgvsp: ENST00000203630.5:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.699G>A
  hgvsp: ENST00000542154.1:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln233Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

12-6858036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858036
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858036
    reference: chr 12
allele count: 731
allele frequency: 6.272739754239033e-3
allele num: 116536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.672G>A
  hgvsp: ENST00000539187.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.672G>A
  hgvsp: ENST00000203630.5:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.672G>A
  hgvsp: ENST00000542154.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.415G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.672G>A
  hgvsp: ENST00000435120.1:c.672G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 24236
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 15129
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9609
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Ala224Ala
num of homozygotes: 20
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

12-6858037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858037
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858037
    reference: chr 12
allele count: 1
allele frequency: 8.5966782435267e-6
allele num: 116324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.414C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.671C>T
  hgvsp: ENSP00000203630.5:p.Ala224Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.671C>T
  hgvsp: ENSP00000403941.1:p.Ala224Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.671C>T
  hgvsp: ENSP00000446317.1:p.Ala224Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.671C>T
  hgvsp: ENSP00000438671.1:p.Ala224Val
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala224Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-6858039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858039
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858039
    reference: chr 12
allele count: 1
allele frequency: 8.605555746790128e-6
allele num: 116204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.412G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.669G>A
  hgvsp: ENST00000539187.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.669G>A
  hgvsp: ENST00000203630.5:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.669G>A
  hgvsp: ENST00000542154.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.669G>A
  hgvsp: ENST00000435120.1:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg223Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

12-6858053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858053
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858053
    reference: chr 12
allele count: 1
allele frequency: 8.754267705506434e-6
allele num: 114230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.655G>A
  hgvsp: ENSP00000203630.5:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.655G>A
  hgvsp: ENSP00000403941.1:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.655G>A
  hgvsp: ENSP00000438671.1:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.398G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.655G>A
  hgvsp: ENSP00000446317.1:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.687G>A
  hgvsp: ENST00000537126.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala219Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

12-6858055-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858055
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858053
    reference: chr 12
allele count: 1
allele frequency: 8.792909397861565e-6
allele num: 113728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.651_652delAG
  hgvsp: ENSP00000438671.1:p.Ala219TrpfsTer17
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.651_652delAG
  hgvsp: ENSP00000446317.1:p.Ala219TrpfsTer17
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.394_395delAG
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.651_652delAG
  hgvsp: ENSP00000403941.1:p.Ala219TrpfsTer17
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.651_652delAG
  hgvsp: ENSP00000203630.5:p.Ala219TrpfsTer17
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.683_684delAG
  hgvsp: ENSP00000439789.1:p.Gln228ArgfsTer?
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24109
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala219TrpfsTer17
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: CCT
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

12-6858060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858060
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858060
    reference: chr 12
allele count: 2
allele frequency: 1.794430089003733e-5
allele num: 111456
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.648C>T
  hgvsp: ENST00000203630.5:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.648C>T
  hgvsp: ENST00000539187.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.648C>T
  hgvsp: ENST00000542154.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.680C>T
  hgvsp: ENSP00000439789.1:p.Pro227Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.391C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.648C>T
  hgvsp: ENST00000435120.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro227Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

12-6858065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858065
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858065
    reference: chr 12
allele count: 6
allele frequency: 5.585760035748864e-5
allele num: 107416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.643G>C
  hgvsp: ENSP00000446317.1:p.Glu215Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.643G>C
  hgvsp: ENSP00000403941.1:p.Glu215Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.643G>C
  hgvsp: ENSP00000438671.1:p.Glu215Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.643G>C
  hgvsp: ENSP00000203630.5:p.Glu215Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.386G>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.675G>C
  hgvsp: ENSP00000439789.1:p.Leu225Phe
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11114
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24078
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu215Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

12-6858068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858068
    reference: chr 12
allele count: 1
allele frequency: 9.074739554974772e-6
allele num: 110196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.640C>T
  hgvsp: ENSP00000438671.1:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.640C>T
  hgvsp: ENSP00000403941.1:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.640C>T
  hgvsp: ENSP00000203630.5:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.383C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.640C>T
  hgvsp: ENSP00000446317.1:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.672C>T
  hgvsp: ENST00000537126.1:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu214Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

12-6858070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858070
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858070
    reference: chr 12
allele count: 3
allele frequency: 2.696483785144172e-5
allele num: 111256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.638G>A
  hgvsp: ENSP00000438671.1:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.638G>A
  hgvsp: ENSP00000403941.1:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.638G>A
  hgvsp: ENSP00000203630.5:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.670G>A
  hgvsp: ENSP00000439789.1:p.Gly224Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.638G>A
  hgvsp: ENSP00000446317.1:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.381G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg213Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

12-6858071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858071
    reference: chr 12
allele count: 51
allele frequency: 4.591120233336934e-4
allele num: 111084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.669C>T
  hgvsp: ENST00000537126.1:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.637C>T
  hgvsp: ENSP00000446317.1:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.637C>T
  hgvsp: ENSP00000203630.5:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.637C>T
  hgvsp: ENSP00000438671.1:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.637C>T
  hgvsp: ENSP00000403941.1:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.380C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25324
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg213Trp
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

12-6858073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858073
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858073
    reference: chr 12
allele count: 3
allele frequency: 2.702751400926143e-5
allele num: 110998
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.635G>A
  hgvsp: ENSP00000203630.5:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.667G>A
  hgvsp: ENSP00000439789.1:p.Gly223Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.635G>A
  hgvsp: ENSP00000438671.1:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.635G>A
  hgvsp: ENSP00000446317.1:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.378G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.635G>A
  hgvsp: ENSP00000403941.1:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg212Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

12-6858083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858083
    reference: chr 12
allele count: 1
allele frequency: 9.203187984317769e-6
allele num: 108658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.368C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.625C>T
  hgvsp: ENST00000542154.1:c.625C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.625C>T
  hgvsp: ENST00000539187.1:c.625C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.625C>T
  hgvsp: ENST00000435120.1:c.625C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.625C>T
  hgvsp: ENST00000203630.5:c.625C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.657C>T
  hgvsp: ENST00000537126.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu209Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-6858084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858084
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858084
    reference: chr 12
allele count: 1
allele frequency: 9.234463015975621e-6
allele num: 108290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.624C>T
  hgvsp: ENST00000435120.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.624C>T
  hgvsp: ENST00000203630.5:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.624C>T
  hgvsp: ENST00000542154.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.624C>T
  hgvsp: ENST00000539187.1:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.656C>T
  hgvsp: ENSP00000439789.1:p.Pro219Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.367C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro219Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-6858088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858088
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858088
    reference: chr 12
allele count: 1
allele frequency: 9.453940402359704e-6
allele num: 105776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.620G>A
  hgvsp: ENSP00000446317.1:p.Arg207His
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.363G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.620G>A
  hgvsp: ENSP00000403941.1:p.Arg207His
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.620G>A
  hgvsp: ENSP00000438671.1:p.Arg207His
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.620G>A
  hgvsp: ENSP00000203630.5:p.Arg207His
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.652G>A
  hgvsp: ENSP00000439789.1:p.Val218Ile
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg207His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

12-6858091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858091
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858091
    reference: chr 12
allele count: 1
allele frequency: 9.523628121369116e-6
allele num: 105002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.617A>G
  hgvsp: ENSP00000403941.1:p.Gln206Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.617A>G
  hgvsp: ENSP00000446317.1:p.Gln206Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.617A>G
  hgvsp: ENSP00000203630.5:p.Gln206Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.617A>G
  hgvsp: ENSP00000438671.1:p.Gln206Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.649A>G
  hgvsp: ENSP00000439789.1:p.Ser217Gly
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.360A>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln206Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-6858113-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858113
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858113
    reference: chr 12
allele count: 1
allele frequency: 1.088945030054883e-5
allele num: 91832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.595G>C
  hgvsp: ENSP00000438671.1:p.Glu199Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.627G>C
  hgvsp: ENST00000537126.1:c.627G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.595G>C
  hgvsp: ENSP00000403941.1:p.Glu199Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.595G>C
  hgvsp: ENSP00000203630.5:p.Glu199Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.595G>C
  hgvsp: ENSP00000446317.1:p.Glu199Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.338G>C
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu199Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-6858118-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858118
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858118
    reference: chr 12
allele count: 2
allele frequency: 2.159220953080129e-5
allele num: 92626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.333G>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.590G>T
  hgvsp: ENSP00000446317.1:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.622G>T
  hgvsp: ENSP00000439789.1:p.Gly208Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.590G>T
  hgvsp: ENSP00000438671.1:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.590G>T
  hgvsp: ENSP00000203630.5:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.590G>T
  hgvsp: ENSP00000403941.1:p.Arg197Leu
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg197Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-6858118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858118
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858118
    reference: chr 12
allele count: 1
allele frequency: 1.079610476540064e-5
allele num: 92626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.590G>A
  hgvsp: ENSP00000438671.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.590G>A
  hgvsp: ENSP00000403941.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.590G>A
  hgvsp: ENSP00000446317.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.590G>A
  hgvsp: ENSP00000203630.5:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.333G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.622G>A
  hgvsp: ENSP00000439789.1:p.Gly208Ser
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14228
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg197Gln
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

12-6858126-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858126
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858126
    reference: chr 12
allele count: 11181
allele frequency: 1.250503288149242e-1
allele num: 89412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.325C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.614C>T
  hgvsp: ENSP00000439789.1:p.Thr205Met
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.582C>T
  hgvsp: ENST00000542154.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.582C>T
  hgvsp: ENST00000435120.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.582C>T
  hgvsp: ENST00000539187.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.582C>T
  hgvsp: ENST00000203630.5:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 2.75e1
  variant carriers: 1480
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 3.25e1
  variant carriers: 736
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 1.25e1
  variant carriers: 1805
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 1.75e1
  variant carriers: 2741
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 13682
  bin: 2.25e1
  variant carriers: 2448
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13489
  bin: 7.5e0
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 1.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 6.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 5.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.25e1
  variant carriers: 100
hgvs: p.Thr205Met
num of homozygotes: 602
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-6858135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858135
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858135
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 80182
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.573G>A
  hgvsp: ENST00000203630.5:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.605G>A
  hgvsp: ENSP00000439789.1:p.Arg202His
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.573G>A
  hgvsp: ENST00000542154.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.573G>A
  hgvsp: ENST00000539187.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.573G>A
  hgvsp: ENST00000435120.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.316G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg202His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-6858140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858140
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858140
    reference: chr 12
allele count: 4
allele frequency: 5.206299622543277e-5
allele num: 76830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.568G>A
  hgvsp: ENSP00000438671.1:p.Ala190Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.600G>A
  hgvsp: ENST00000537126.1:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.311G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.568G>A
  hgvsp: ENSP00000446317.1:p.Ala190Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.568G>A
  hgvsp: ENSP00000203630.5:p.Ala190Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.568G>A
  hgvsp: ENSP00000403941.1:p.Ala190Thr
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16905
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala190Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

12-6858141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858141
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858141
    reference: chr 12
allele count: 2
allele frequency: 2.658019244059327e-5
allele num: 75244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.567C>T
  hgvsp: ENST00000203630.5:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.567C>T
  hgvsp: ENST00000542154.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.567C>T
  hgvsp: ENST00000539187.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.599C>T
  hgvsp: ENSP00000439789.1:p.Pro200Leu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.567C>T
  hgvsp: ENST00000435120.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.310C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17559
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro200Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

12-6858141-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858141
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858141
    reference: chr 12
allele count: 2
allele frequency: 2.658019244059327e-5
allele num: 75244
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.567C>G
  hgvsp: ENST00000203630.5:c.567C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.310C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.567C>G
  hgvsp: ENST00000435120.1:c.567C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.567C>G
  hgvsp: ENST00000542154.1:c.567C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.599C>G
  hgvsp: ENSP00000439789.1:p.Pro200Arg
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.567C>G
  hgvsp: ENST00000539187.1:c.567C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro200Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-6858142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858142
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858142
    reference: chr 12
allele count: 1
allele frequency: 1.330247159922314e-5
allele num: 75174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.566C>T
  hgvsp: ENSP00000403941.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.566C>T
  hgvsp: ENSP00000438671.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.566C>T
  hgvsp: ENSP00000446317.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.566C>T
  hgvsp: ENSP00000203630.5:p.Ala189Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.598C>T
  hgvsp: ENSP00000439789.1:p.Pro200Ser
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.309C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala189Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-6858157-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858157
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858157
    reference: chr 12
allele count: 1
allele frequency: 1.549618793776731e-5
allele num: 64532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-9C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-9C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-9C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-9C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-9C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-9C>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19810
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6764
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5743
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

12-6858164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858164
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858164
    reference: chr 12
allele count: 246
allele frequency: 4.072308303535955e-3
allele num: 60408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-16G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-16G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-16G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-16G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-16G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-16G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 1.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21939
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 32693
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8263
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 3.25e1
  variant carriers: 3
num of homozygotes: 5
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

12-6858165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858165
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858165
    reference: chr 12
allele count: 2
allele frequency: 3.35795836131632e-5
allele num: 59560
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-17C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-17C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-17C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-17C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-17C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-17C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18796
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22065
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-6858169-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858169
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858169
    reference: chr 12
allele count: 1
allele frequency: 1.747762863534676e-5
allele num: 57216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-21T>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-21T>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-21T>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-21T>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-21T>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-21T>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

12-6858177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858177
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858177
    reference: chr 12
allele count: 9
allele frequency: 1.832919229359293e-4
allele num: 49102
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-29A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-29A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-29A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-29A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-29A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-29A>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15511
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22394
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14060
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

12-6858178-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858178
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858179
    reference: chr 12
allele count: 1
allele frequency: 2.054231717337716e-5
allele num: 48680
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-31dupA
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-31dupA
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-31dupA
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-31dupA
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-31dupA
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-31dupA
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15211
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14406
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

12-6858179-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858179
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858179
    reference: chr 12
allele count: 15
allele frequency: 3.225806451612903e-4
allele num: 46500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-31A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-31A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-31A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-31A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-31A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-31A>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22814
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

12-6858181-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858181
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858181
    reference: chr 12
allele count: 1
allele frequency: 2.196740037783929e-5
allele num: 45522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-33A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-33A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-33A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-33A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-33A>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-33A>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23086
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

12-6858183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858183
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858183
    reference: chr 12
allele count: 2
allele frequency: 4.703447627110672e-5
allele num: 42522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-35G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-35G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-35G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-35G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-35G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-35G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12808
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23613
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

12-6858184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858184
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858184
    reference: chr 12
allele count: 3
allele frequency: 6.99724774921864e-5
allele num: 42874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-36C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-36C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-36C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-36C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-36C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-36C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23702
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21896
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

12-6858184-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858184
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858184
    reference: chr 12
allele count: 2
allele frequency: 4.664831832812427e-5
allele num: 42874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-36C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-36C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-36C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-36C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-36C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-36C>G
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23702
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

12-6858198-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858198
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858198
    reference: chr 12
allele count: 12
allele frequency: 3.556398553731255e-4
allele num: 33742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.303-50T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.560-50T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.560-50T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.592-50T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.560-50T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.560-50T>C
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26653
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 7627
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7385
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17027
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

12-6858964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858964
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858964
    reference: chr 12
allele count: 997
allele frequency: 8.271799551978761e-3
allele num: 120530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1223G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+50G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+50G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+50G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+50G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+50G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+50G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 9.75e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 8.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39414
  bin: 9.75e1
  variant carriers: 966
num of homozygotes: 31
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

12-6858965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858965
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858965
    reference: chr 12
allele count: 9
allele frequency: 7.454280413464087e-5
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+49C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1222C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

12-6858966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858966
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858966
    reference: chr 12
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+48C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+48C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1221C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+48C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+48C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+48C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+48C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-6858967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858967
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858967
    reference: chr 12
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+47C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1220C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

12-6858971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858971
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858971
    reference: chr 12
allele count: 14419
allele frequency: 1.194456410086484e-1
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+43G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+43G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+43G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+43G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1216G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+43G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+43G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 8.75e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.25e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 4.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 3.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 8.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 6.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 9839
  bin: 9.75e1
  variant carriers: 9298
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 5.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.75e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 40542
  bin: 9.75e1
  variant carriers: 13395
genotype quality: GenotypeQuality
  all individuals: 4467
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 4
num of homozygotes: 960
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

12-6858972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858972
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858972
    reference: chr 12
allele count: 3
allele frequency: 2.483073714181662e-5
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+42C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+42C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1215C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+42C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+42C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+42C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+42C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36264
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

12-6858972-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858972
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858972
    reference: chr 12
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1215C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+42C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+42C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+42C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+42C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+42C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+42C>G
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

12-6858976-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858976
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858976
    reference: chr 12
allele count: 17
allele frequency: 1.406842218507423e-4
allele num: 120838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+38A>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1211A>G
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

12-6858997-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858997
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858996
    reference: chr 12
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+16delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+16delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+16delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+16delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+16delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1189delC
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+16delC
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: CG
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

12-6858998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6858998
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6858998
    reference: chr 12
allele count: 3
allele frequency: 2.477618843117175e-5
allele num: 121084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+16C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+16C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1189C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+16C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+16C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+16C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+16C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

12-6859002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859002
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859002
    reference: chr 12
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1185C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.302+12C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.559+12C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.591+12C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.559+12C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.559+12C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.559+12C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

12-6859033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859033
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859033
    reference: chr 12
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.540C>T
  hgvsp: ENST00000542154.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.540C>T
  hgvsp: ENST00000539187.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.572C>T
  hgvsp: ENSP00000439789.1:p.Thr191Ile
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.540C>T
  hgvsp: ENST00000435120.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1154C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.540C>T
  hgvsp: ENST00000203630.5:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.283C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr191Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-6859042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859042
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859042
    reference: chr 12
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.531G>A
  hgvsp: ENST00000542154.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.531G>A
  hgvsp: ENST00000539187.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.531G>A
  hgvsp: ENST00000435120.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.531G>A
  hgvsp: ENST00000203630.5:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.563G>A
  hgvsp: ENSP00000439789.1:p.Ser188Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.274G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1145G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser188Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

12-6859052-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859052
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859051
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.520delG
  hgvsp: ENSP00000438671.1:p.Asp174ThrfsTer?
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.263delG
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.520delG
  hgvsp: ENSP00000446317.1:p.Asp174ThrfsTer?
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.520delG
  hgvsp: ENSP00000203630.5:p.Asp174ThrfsTer111
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.552delG
  hgvsp: ENSP00000439789.1:p.Thr185ProfsTer12
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1134delG
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.520delG
  hgvsp: ENSP00000403941.1:p.Asp174ThrfsTer111
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36240
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp174ThrfsTer111
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: TC
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

12-6859057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859057
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859057
    reference: chr 12
allele count: 88
allele frequency: 7.250317201377561e-4
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.548G>A
  hgvsp: ENSP00000439789.1:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.516G>A
  hgvsp: ENST00000542154.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.259G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.516G>A
  hgvsp: ENST00000539187.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.516G>A
  hgvsp: ENST00000435120.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1130G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.516G>A
  hgvsp: ENST00000203630.5:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg183Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

12-6859071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859071
    reference: chr 12
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1116C>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.502C>A
  hgvsp: ENST00000542154.1:c.502C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.534C>A
  hgvsp: ENST00000537126.1:c.534C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.502C>A
  hgvsp: ENST00000203630.5:c.502C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.245C>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.502C>A
  hgvsp: ENST00000539187.1:c.502C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.502C>A
  hgvsp: ENST00000435120.1:c.502C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36226
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7493
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg168Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

12-6859075-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859075
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859075
    reference: chr 12
allele count: 6
allele frequency: 4.943153732081068e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.498C>T
  hgvsp: ENST00000539187.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.530C>T
  hgvsp: ENSP00000439789.1:p.Ala177Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1112C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.241C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.498C>T
  hgvsp: ENST00000203630.5:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.498C>T
  hgvsp: ENST00000542154.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.498C>T
  hgvsp: ENST00000435120.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala177Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

12-6859077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859077
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859077
    reference: chr 12
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.496C>T
  hgvsp: ENSP00000446317.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1110C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.496C>T
  hgvsp: ENSP00000403941.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.496C>T
  hgvsp: ENSP00000203630.5:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.496C>T
  hgvsp: ENSP00000438671.1:p.Arg166Cys
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.528C>T
  hgvsp: ENST00000537126.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.239C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg166Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

12-6859081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859081
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859081
    reference: chr 12
allele count: 7
allele frequency: 5.76710771309463e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1106C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.492C>T
  hgvsp: ENST00000542154.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.524C>T
  hgvsp: ENSP00000439789.1:p.Ser175Phe
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.492C>T
  hgvsp: ENST00000435120.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.492C>T
  hgvsp: ENST00000203630.5:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.492C>T
  hgvsp: ENST00000539187.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.235C>T
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser175Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

12-6859087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859087
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859087
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.486C>T
  hgvsp: ENST00000539187.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.229C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.486C>T
  hgvsp: ENST00000542154.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1100C>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.486C>T
  hgvsp: ENST00000203630.5:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.518C>T
  hgvsp: ENSP00000439789.1:p.Thr173Ile
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.486C>T
  hgvsp: ENST00000435120.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr173Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

12-6859098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859098
    reference: chr 12
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.475G>A
  hgvsp: ENSP00000438671.1:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.475G>A
  hgvsp: ENSP00000203630.5:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1089G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.218G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.507G>A
  hgvsp: ENST00000537126.1:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.475G>A
  hgvsp: ENSP00000403941.1:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.475G>A
  hgvsp: ENSP00000446317.1:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp159Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

12-6859099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859099
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859099
    reference: chr 12
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.506G>A
  hgvsp: ENSP00000439789.1:p.Gly169Glu
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.474G>A
  hgvsp: ENST00000203630.5:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.474G>A
  hgvsp: ENST00000435120.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.217G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1088G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.474G>A
  hgvsp: ENST00000542154.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.474G>A
  hgvsp: ENST00000539187.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly169Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-6859102-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859102
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859102
    reference: chr 12
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.471C>G
  hgvsp: ENSP00000446317.1:p.Ile157Met
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.214C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.471C>G
  hgvsp: ENSP00000438671.1:p.Ile157Met
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.471C>G
  hgvsp: ENSP00000203630.5:p.Ile157Met
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.471C>G
  hgvsp: ENSP00000403941.1:p.Ile157Met
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1085C>G
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.503C>G
  hgvsp: ENSP00000439789.1:p.Ser168Cys
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile157Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/12-6859111-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859111
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859111
    reference: chr 12
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.462G>T
  hgvsp: ENST00000435120.1:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.205G>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1076G>T
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.494G>T
  hgvsp: ENSP00000439789.1:p.Gly165Val
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.462G>T
  hgvsp: ENST00000542154.1:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.462G>T
  hgvsp: ENST00000539187.1:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.462G>T
  hgvsp: ENST00000203630.5:c.462G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly165Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

12-6859115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859115
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859115
    reference: chr 12
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.458T>C
  hgvsp: ENSP00000403941.1:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.458T>C
  hgvsp: ENSP00000446317.1:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.458T>C
  hgvsp: ENSP00000438671.1:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.201T>C
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.458T>C
  hgvsp: ENSP00000203630.5:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.490T>C
  hgvsp: ENST00000537126.1:c.490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1072T>C
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36197
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile153Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

12-6859129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859129
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859129
    reference: chr 12
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.444G>A
  hgvsp: ENST00000203630.5:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.444G>A
  hgvsp: ENST00000539187.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.444G>A
  hgvsp: ENST00000542154.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.444G>A
  hgvsp: ENST00000435120.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.476G>A
  hgvsp: ENSP00000439789.1:p.Trp159Ter
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1058G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.187G>A
  variant of: http://identifiers.org/hgnc/7126
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36185
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp159Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

12-6859140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6859140
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 6859140
    reference: chr 12
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000439789
  ensembl transcript: ENST00000537126
  gene symbol: MLF2
  hgvsc: ENST00000537126.1:c.465G>A
  hgvsp: ENST00000537126.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541305
  gene symbol: MLF2
  hgvsc: ENST00000541305.1:n.176G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000403941
  ensembl transcript: ENST00000435120
  gene symbol: MLF2
  hgvsc: ENST00000435120.1:c.433G>A
  hgvsp: ENSP00000403941.1:p.Asp145Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000446317
  ensembl transcript: ENST00000539187
  gene symbol: MLF2
  hgvsc: ENST00000539187.1:c.433G>A
  hgvsp: ENSP00000446317.1:p.Asp145Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000438671
  ensembl transcript: ENST00000542154
  gene symbol: MLF2
  hgvsc: ENST00000542154.1:c.433G>A
  hgvsp: ENSP00000438671.1:p.Asp145Asn
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000089693
  ensembl transcript: ENST00000541346
  gene symbol: MLF2
  hgvsc: ENST00000541346.1:n.1047G>A
  variant of: http://identifiers.org/hgnc/7126
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000089693
  ensembl protein: ENSP00000203630
  ensembl transcript: ENST00000203630
  gene symbol: MLF2
  hgvsc: ENST00000203630.5:c.433G>A
  hgvsp: ENSP00000203630.5:p.Asp145Asn
  variant of: http://identifiers.org/hgnc/7126
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp145Asn
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 554
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 126
allele frequency: 2.058218171126139e-3
allele num: 61218
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.146892655367231e-3
allele num: 8850
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.174228149007102e-4
allele num: 13798
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.274231678486998e-4
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 75
allele frequency: 1.284246575342466e-2
allele num: 5840
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.751927119831815e-4
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.015228426395939e-2
allele num: 788
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.667e0

FS
type: SiteQuality
SIO_000300: 3.01979e2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.68e0

VQSLOD
type: SiteQuality
SIO_000300: -4.325e2

QD
type: SiteQuality
SIO_000300: 9.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.328e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

DP
type: SiteQuality
SIO_000300: 1.82429e6

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737015806843842e-4
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577685220244857e-5
allele num: 63384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14272
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.118e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

DP
type: SiteQuality
SIO_000300: 1.737603e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.329433661260303e-4
allele num: 15044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.740104e6

QD
type: SiteQuality
SIO_000300: 1.051e1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 3106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571486940943521e-5
allele num: 63634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.689e0

FS
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 1.74311e6

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.099453414588176e-4
allele num: 63668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.924e0

MQRankSum
type: SiteQuality
SIO_000300: 7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.744657e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.599488163787588e-4
allele num: 6252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577685220244857e-5
allele num: 63384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

VQSLOD
type: SiteQuality
SIO_000300: -2.107e2

FS
type: SiteQuality
SIO_000300: 2.12627e2

QD
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.742831e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.748e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
all individuals: 916
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 9.75e1
variant carriers: 8

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.254351030135783e-4
allele num: 63778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.238e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.742586e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 1.345e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1897
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variant carriers: 1

GenotypeQuality
all individuals: 360
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567005139776858e-5
allele num: 63816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 3.487e0

DP
type: SiteQuality
SIO_000300: 1.742688e6

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564064064064064e-5
allele num: 63936
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.268e0

FS
type: SiteQuality
SIO_000300: 1.529e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

DP
type: SiteQuality
SIO_000300: 1.748301e6

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561524047470331e-5
allele num: 64040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.83e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.013e1

DP
type: SiteQuality
SIO_000300: 1.755141e6

VQSLOD
type: SiteQuality
SIO_000300: -7.985e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 701

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
num of homozygotes: 0

European (Finnish)
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allele count: 4
allele frequency: 6.148170919151552e-4
allele num: 6506
num of homozygotes: 0

East Asian
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allele num: 8490
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Other
type: Population
allele count: 4
allele frequency: 4.662004662004662e-3
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 3.330411919368975e-3
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 587
allele frequency: 6.175047338523038e-2
allele num: 9506
num of homozygotes: 20

European (Non-Finnish)
type: Population
allele count: 96
allele frequency: 1.515917129863567e-3
allele num: 63328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

DP
type: SiteQuality
SIO_000300: 1.713001e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 199
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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African
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allele frequency: 1.061120543293718e-4
allele num: 9424
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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SIO_000300: 1.691969e6

InbreedingCoeff
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SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 175
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582779360557138e-5
allele num: 63180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.543e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 9.801e0

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.065e0

QD
type: SiteQuality
SIO_000300: 1.483e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.680949e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9106
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611811353599175e-5
allele num: 62042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.615797e6

QD
type: SiteQuality
SIO_000300: 1.606e1

MQ
type: SiteQuality
SIO_000300: 5.827e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 5.701e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.73e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619590567504535e-5
allele num: 61744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

QD
type: SiteQuality
SIO_000300: 1.441e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.838e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

FS
type: SiteQuality
SIO_000300: 5.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.602085e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.309285856112251e-5
allele num: 60436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.691e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 1.965e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.555789e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.029159519725557e-4
allele num: 58300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.511787e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 2.1524e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 3.143e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.644e0

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1503
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.673920321392702e-5
allele num: 59740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.503e0

FS
type: SiteQuality
SIO_000300: 1.689e0

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

DP
type: SiteQuality
SIO_000300: 1.49063e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.024e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 7.54e0

GenotypeQuality
all individuals: 593
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 308
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11632060727841e-4
allele num: 8958
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.227897838899803e-4
allele num: 8144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.655958137378287e-5
allele num: 60388
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.497083e6

FS
type: SiteQuality
SIO_000300: 8.451000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: -4.494e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.674e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 50

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60324
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.818512456810329e-4
allele num: 10998
num of homozygotes: 0

South Asian
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allele count: 47
allele frequency: 2.908775838593885e-3
allele num: 16158
num of homozygotes: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.418e1

DP
type: SiteQuality
SIO_000300: 1.497471e6

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

FS
type: SiteQuality
SIO_000300: 5.958e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.099181073703367e-5
allele num: 10990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.316419593406958e-5
allele num: 60306
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8922
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.294e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
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African
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allele count: 1
allele frequency: 1.147578609134726e-4
allele num: 8714
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5456
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.167e1

FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.683e0

DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.683e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 524
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GenotypeQuality
all individuals: 1117
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.149161112387957e-4
allele num: 8702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
type: SiteQuality
SIO_000300: 1.413381e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.985e0

MQRankSum
type: SiteQuality
SIO_000300: -2.772e0

VQSLOD
type: SiteQuality
SIO_000300: -6.893e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e0

QD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.412e0

GenotypeQuality
all individuals: 515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27787
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.732081615685731e-5
allele num: 57734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.191e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.974e0

DP
type: SiteQuality
SIO_000300: 1.3376e6

GenotypeQuality
all individuals: 437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.5e0
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GenotypeQuality
all individuals: 13585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743679163034002e-5
allele num: 57350
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 4.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 1.927e0

VQSLOD
type: SiteQuality
SIO_000300: -3.143e0

DP
type: SiteQuality
SIO_000300: 1.312371e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.45e-1

GenotypeQuality
all individuals: 879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3073
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7180
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.12739571589628e-4
allele num: 8870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

QD
type: SiteQuality
SIO_000300: 9.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.638e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.086817e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
all individuals: 1951
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 820
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.961015021375064e-5
allele num: 50994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.999860002799944e-5
allele num: 14286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
SIO_000300: 9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

DP
type: SiteQuality
SIO_000300: 1.096901e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 690
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 864
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.365001365001365e-4
allele num: 7326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50994
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.096901e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.82e0

GenotypeQuality
all individuals: 10522
bin: 9.75e1
variant carriers: 9686

GenotypeQuality
all individuals: 20090
bin: 2.25e1
variant carriers: 53

GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 104

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 123

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 125

GenotypeQuality
all individuals: 325
bin: 1.25e1
variant carriers: 33

GenotypeQuality
all individuals: 948
bin: 3.75e1
variant carriers: 75

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 115

GenotypeQuality
all individuals: 15261
bin: 6.25e1
variant carriers: 125

East Asian
type: Population
allele count: 877
allele frequency: 1.361801242236025e-1
allele num: 6440
num of homozygotes: 50

Other
type: Population
allele count: 83
allele frequency: 1.276923076923077e-1
allele num: 650
num of homozygotes: 6

South Asian
type: Population
allele count: 753
allele frequency: 5.403272101033295e-2
allele num: 13936
num of homozygotes: 37

Latino
type: Population
allele count: 1346
allele frequency: 1.623642943305187e-1
allele num: 8290
num of homozygotes: 74

African
type: Population
allele count: 456
allele frequency: 6.404494382022471e-2
allele num: 7120
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 472
allele frequency: 1.299559471365639e-1
allele num: 3632
num of homozygotes: 29

European (Non-Finnish)
type: Population
allele count: 7194
allele frequency: 1.457928015564202e-1
allele num: 49344
num of homozygotes: 398

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

DP
type: SiteQuality
SIO_000300: 1.174544e6

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

GenotypeQuality
all individuals: 2076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28764
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 773
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43960
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.75854e5

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 389
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13327
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.120816520294327e-5
allele num: 42130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12958
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.824151769427216e-4
allele num: 5482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

DP
type: SiteQuality
SIO_000300: 9.33868e5

FS
type: SiteQuality
SIO_000300: 3.643e0

VQSLOD
type: SiteQuality
SIO_000300: -1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

QD
type: SiteQuality
SIO_000300: 5.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
all individuals: 1805
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.427420137877464e-5
allele num: 41196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.779679477205539e-5
allele num: 12854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

FS
type: SiteQuality
SIO_000300: 2.015e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 9.07381e5

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 4.72e0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.427420137877464e-5
allele num: 41196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12854
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.57331655129012e-4
allele num: 6356
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 4.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.07381e5

FS
type: SiteQuality
SIO_000300: 2.015e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

GenotypeQuality
all individuals: 2816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.429189136666181e-5
allele num: 41166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.049e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 9.05822e5

QD
type: SiteQuality
SIO_000300: 8.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.98019801980198e-4
allele num: 5050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 7.77982e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 2.648e0

QD
type: SiteQuality
SIO_000300: 1.51e1

VQSLOD
type: SiteQuality
SIO_000300: -2.073e0

GenotypeQuality
all individuals: 2838
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1623
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5238
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 453
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1749
bin: 9.75e1
variant carriers: 228

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 12

African
type: Population
allele count: 218
allele frequency: 4.347826086956522e-2
allele num: 5014
num of homozygotes: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 4.258166555143257e-4
allele num: 32878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.304147465437788e-3
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 2.871024734982332e-3
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 7.50288e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 1100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.02008032128514e-4
allele num: 3984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.41284e5

FS
type: SiteQuality
SIO_000300: 6.111e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31850
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.134927412467976e-4
allele num: 4684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 6.56e0

DP
type: SiteQuality
SIO_000300: 7.17942e5

VQSLOD
type: SiteQuality
SIO_000300: -2.772e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 2945
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 2.964426877470356e-3
allele num: 3036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.85e-2

FS
type: SiteQuality
SIO_000300: 9.510999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

DP
type: SiteQuality
SIO_000300: 6.67878e5

VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 7.75e0

GenotypeQuality
all individuals: 2657
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 666
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.786157807057398e-5
allele num: 26412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.632e1

FS
type: SiteQuality
SIO_000300: 2.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 6.62574e5

MQ
type: SiteQuality
SIO_000300: 6.098e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

GenotypeQuality
all individuals: 442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 2.536231884057971e-3
allele num: 2760
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.717552887364208e-4
allele num: 10494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.949757532395262e-5
allele num: 25158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.50498e5

QD
type: SiteQuality
SIO_000300: 1.183e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 2.769e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
all individuals: 3827
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3491
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.668378576669112e-4
allele num: 2726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.085e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 6.44929e5

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.845759817871372e-4
allele num: 3514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.389430251953297e-5
allele num: 22782
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 6.33265e5

FS
type: SiteQuality
SIO_000300: 1.639e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.155e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 994
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.695652173913044e-5
allele num: 23000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.269e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 6.31533e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 2.385e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeQuality
all individuals: 2507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.960015680125441e-4
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23000
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

FS
type: SiteQuality
SIO_000300: 2.385e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 6.31533e5

GenotypeQuality
all individuals: 2758
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 6.843846241587772e-4
allele num: 17534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 5.95842e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 3816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 37
allele frequency: 3.196268140981341e-3
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 162
allele frequency: 2.43895094998645e-3
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.077155824508321e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

African
type: Population
allele count: 791
allele frequency: 7.61748844375963e-2
allele num: 10384
num of homozygotes: 31

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

FS
type: SiteQuality
SIO_000300: 1.978e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 3.628296e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

QD
type: SiteQuality
SIO_000300: 1.807e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39303
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.815100154083205e-4
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 5.897e1

DP
type: SiteQuality
SIO_000300: 3.631027e6

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39303
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

QD
type: SiteQuality
SIO_000300: 1.742e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.936999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 3.630914e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

GenotypeQuality
all individuals: 2543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 3.631315e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.46e-1

FS
type: SiteQuality
SIO_000300: 4.494e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1791
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2447
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1766
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2318
bin: 8.25e1
variant carriers: 8

European (Non-Finnish)
type: Population
allele count: 8156
allele frequency: 1.226761326033331e-1
allele num: 66484
num of homozygotes: 482

European (Finnish)
type: Population
allele count: 650
allele frequency: 9.836561743341404e-2
allele num: 6608
num of homozygotes: 42

South Asian
type: Population
allele count: 822
allele frequency: 5.103688066559046e-2
allele num: 16106
num of homozygotes: 38

African
type: Population
allele count: 2210
allele frequency: 2.12581762216237e-1
allele num: 10396
num of homozygotes: 235

Other
type: Population
allele count: 97
allele frequency: 1.077777777777778e-1
allele num: 900
num of homozygotes: 7

East Asian
type: Population
allele count: 945
allele frequency: 1.092738205365402e-1
allele num: 8648
num of homozygotes: 58

Latino
type: Population
allele count: 1539
allele frequency: 1.329704510108865e-1
allele num: 11574
num of homozygotes: 98

MQ
type: SiteQuality
SIO_000300: 5.872e1

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

FS
type: SiteQuality
SIO_000300: 1.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

DP
type: SiteQuality
SIO_000300: 3.730082e6

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 2.813779e6

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

FS
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 2.813779e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36260
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5597
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2180
bin: 8.75e1
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GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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East Asian
type: Population
allele count: 17
allele frequency: 1.965317919075144e-3
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 3.378e0

QD
type: SiteQuality
SIO_000300: 1.465e1

MQ
type: SiteQuality
SIO_000300: 5.866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 2.815536e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.209e0

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

InbreedingCoeff
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 1.567e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.59e-1

DP
type: SiteQuality
SIO_000300: 2.828263e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

FS
type: SiteQuality
SIO_000300: 4.893e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 2.829711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0

FS
type: SiteQuality
SIO_000300: 5.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.341e1

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 2.831865e6

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.465e0

FS
type: SiteQuality
SIO_000300: 1.304e0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.074e0

DP
type: SiteQuality
SIO_000300: 2.837724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.272e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.798e0

FS
type: SiteQuality
SIO_000300: 5.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 2.837374e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.812e1

FS
type: SiteQuality
SIO_000300: 2.777e0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.495128166691651e-5
allele num: 66710
num of homozygotes: 0

East Asian
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African
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allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 77
allele frequency: 4.663275193798449e-3
allele num: 16512
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.05e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 6614
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Other
type: Population
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African
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
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allele num: 66708
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East Asian
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South Asian
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Latino
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MQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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FS
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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Other
type: Population
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Latino
type: Population
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allele frequency: 8.638562543192812e-5
allele num: 11576
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African
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allele frequency: 4.806767929244376e-4
allele num: 10402
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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African
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ClippingRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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Other
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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Latino
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Latino
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European (Finnish)
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MQRankSum
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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ClippingRankSum
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