10-17199809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199809
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199809
    reference: chr 10
allele count: 1
allele frequency: 1.203456326569909e-5
allele num: 83094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-26A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-26A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6693
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

10-17199812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199812
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199812
    reference: chr 10
allele count: 2
allele frequency: 2.410858506714241e-5
allele num: 82958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-29A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-29A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22763
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

10-17199814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199814
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199814
    reference: chr 10
allele count: 1
allele frequency: 1.223840411210378e-5
allele num: 81710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-31T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-31T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22443
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5535
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-17199817-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199817
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199817
    reference: chr 10
allele count: 1
allele frequency: 1.267941370391033e-5
allele num: 78868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-34T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-34T>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

10-17199819-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199819
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199819
    reference: chr 10
allele count: 2
allele frequency: 2.562197340439161e-5
allele num: 78058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-36A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-36A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4867
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

10-17199821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199821
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199821
    reference: chr 10
allele count: 1
allele frequency: 1.316343723673125e-5
allele num: 75968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-38C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-38C>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

10-17199825-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199825
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199826
    reference: chr 10
allele count: 1
allele frequency: 1.367764525659262e-5
allele num: 73112
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-43dupT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-43dupT
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17857
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-17199830-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199830
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199830
    reference: chr 10
allele count: 20605
allele frequency: 2.998661117094042e-1
allele num: 68714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-47T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-47T>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.75e1
  variant carriers: 887
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 2.25e1
  variant carriers: 1909
genotype depth: GenotypeDepth
  all individuals: 19412
  bin: 7.5e0
  variant carriers: 6813
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.5e0
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 1.75e1
  variant carriers: 4432
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 18079
  bin: 1.25e1
  variant carriers: 8387
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 1.25e1
  variant carriers: 346
num of homozygotes: 2977
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

10-17199831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17199831
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17199831
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 64136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.472-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.406-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*209-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*564-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.301-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.480-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.342-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*179-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.329-48A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.544-48A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20879
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6363
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

10-17201099-TAATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201099
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201095
    reference: chr 10
allele count: 1
allele frequency: 1.130710085933967e-5
allele num: 88440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1320_175-1317delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+42_*208+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+42_328+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+42_300+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+42_341+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+42_471+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+42_*178+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+42_543+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+42_*563+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+42_479+45delTATT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+42_405+45delTATT
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: TAATA
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-17201105-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201105
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201105
    reference: chr 10
allele count: 1
allele frequency: 1.076797174484214e-5
allele num: 92868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1322T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+40T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+40T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23615
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

10-17201111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201111
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201111
    reference: chr 10
allele count: 7
allele frequency: 6.688579727870357e-5
allele num: 104656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1328G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+34G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+34G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32145
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-17201128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201128
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201128
    reference: chr 10
allele count: 11
allele frequency: 9.268933904074961e-5
allele num: 118676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1345T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+17T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+17T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40200
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7464
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

10-17201132-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201132
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201132
    reference: chr 10
allele count: 1
allele frequency: 8.378577652657685e-6
allele num: 119352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1349G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+13G>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-17201138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201138
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201138
    reference: chr 10
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1355T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+7T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+7T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.543+7T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

10-17201138-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201138
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201138
    reference: chr 10
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+7T>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1355T>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.543+7T>A
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

10-17201142-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201142
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201142
    reference: chr 10
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.471+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.300+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.405+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.341+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.543+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*178+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*563+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.328+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.479+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*208+3A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1359A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.543+3A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-17201152-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201152
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201152
    reference: chr 10
allele count: 7
allele frequency: 5.791633571617686e-5
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*171C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.398C>G
  hgvsp: ENSP00000324328.7:p.Pro133Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.464C>G
  hgvsp: ENSP00000409354.3:p.Pro155Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1369C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.257C>G
  hgvsp: ENST00000436968.2:c.257C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.293C>G
  hgvsp: ENSP00000412256.2:p.Pro98Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.321C>G
  hgvsp: ENST00000377766.5:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.334C>G
  hgvsp: ENSP00000324263.10:p.Pro112Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.472C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*556C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.536C>G
  hgvsp: ENSP00000367030.3:p.Pro179Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.410C>G
  hgvsp: ENST00000525762.1:c.410C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*201C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*171C>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro179Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

10-17201155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201155
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201155
    reference: chr 10
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.461C>T
  hgvsp: ENSP00000409354.3:p.Ala154Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.395C>T
  hgvsp: ENSP00000324328.7:p.Ala132Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.331C>T
  hgvsp: ENSP00000324263.10:p.Ala111Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.469C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.318C>T
  hgvsp: ENST00000377766.5:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1372C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*553C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.533C>T
  hgvsp: ENSP00000367030.3:p.Ala178Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.290C>T
  hgvsp: ENSP00000412256.2:p.Ala97Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*168C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.407C>T
  hgvsp: ENSP00000431476.1:p.Ala136Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*198C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*168C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.254C>T
  hgvsp: ENST00000436968.2:c.254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala178Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

10-17201165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201165
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201165
    reference: chr 10
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.523C>T
  hgvsp: ENSP00000367030.3:p.Pro175Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*158C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.451C>T
  hgvsp: ENSP00000409354.3:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1382C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.321C>T
  hgvsp: ENSP00000324263.10:p.Pro108Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*543C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.397C>T
  hgvsp: ENSP00000431476.1:p.Pro133Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*158C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.244C>T
  hgvsp: ENSP00000390611.2:p.Thr82Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.280C>T
  hgvsp: ENSP00000412256.2:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.308C>T
  hgvsp: ENSP00000366996.5:p.Thr103Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*188C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.459C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.385C>T
  hgvsp: ENSP00000324328.7:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro175Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

10-17201169-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201169
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201169
    reference: chr 10
allele count: 2
allele frequency: 1.650737054094653e-5
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*539A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.519A>T
  hgvsp: ENST00000377799.3:c.519A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.240A>T
  hgvsp: ENSP00000390611.2:p.Ile81Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.455A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1386A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.393A>T
  hgvsp: ENST00000525762.1:c.393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.317A>T
  hgvsp: ENST00000313936.10:c.317A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.304A>T
  hgvsp: ENSP00000366996.5:p.Ile102Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.381A>T
  hgvsp: ENST00000351358.4:c.381A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.447A>T
  hgvsp: ENST00000412821.3:c.447A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*154A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.276A>T
  hgvsp: ENST00000457442.2:c.276A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*154A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*184A>T
  variant of: http://identifiers.org/hgnc/2977
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile102Phe
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

10-17201170-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201170
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201170
    reference: chr 10
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.454C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*183C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*538C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.239C>G
  hgvsp: ENST00000436968.2:c.239C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.380C>G
  hgvsp: ENSP00000324328.7:p.Pro127Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1387C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.518C>G
  hgvsp: ENSP00000367030.3:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*153C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.303C>G
  hgvsp: ENST00000377766.5:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.446C>G
  hgvsp: ENSP00000409354.3:p.Pro149Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.392C>G
  hgvsp: ENSP00000431476.1:p.Pro131Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*153C>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.275C>G
  hgvsp: ENSP00000412256.2:p.Pro92Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.316C>G
  hgvsp: ENSP00000324263.10:p.Pro106Arg
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro173Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

10-17201176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201176
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201176
    reference: chr 10
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.269C>T
  hgvsp: ENSP00000412256.2:p.Ser90Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.440C>T
  hgvsp: ENSP00000409354.3:p.Ser147Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.374C>T
  hgvsp: ENSP00000324328.7:p.Ser125Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*532C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*147C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.233C>T
  hgvsp: ENST00000436968.2:c.233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*147C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.512C>T
  hgvsp: ENSP00000367030.3:p.Ser171Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.310C>T
  hgvsp: ENSP00000324263.10:p.Ser104Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.386C>T
  hgvsp: ENSP00000431476.1:p.Ser129Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*177C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.448C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1393C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.297C>T
  hgvsp: ENST00000377766.5:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser171Leu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

10-17201179-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201179
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201179
    reference: chr 10
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.383A>T
  hgvsp: ENSP00000431476.1:p.Gln128Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.509A>T
  hgvsp: ENSP00000367030.3:p.Gln170Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.445A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*144A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*174A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.307A>T
  hgvsp: ENSP00000324263.10:p.Gln103Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.437A>T
  hgvsp: ENSP00000409354.3:p.Gln146Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.371A>T
  hgvsp: ENSP00000324328.7:p.Gln124Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*144A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*529A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.266A>T
  hgvsp: ENSP00000412256.2:p.Gln89Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.294A>T
  hgvsp: ENST00000377766.5:c.294A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.230A>T
  hgvsp: ENST00000436968.2:c.230A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1396A>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln170Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/10-17201190-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201190
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201190
    reference: chr 10
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.498T>G
  hgvsp: ENSP00000367030.3:p.Ile166Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.283T>G
  hgvsp: ENSP00000366996.5:p.Cys95Gly
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.255T>G
  hgvsp: ENSP00000412256.2:p.Ile85Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.426T>G
  hgvsp: ENSP00000409354.3:p.Ile142Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*163T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.434T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.296T>G
  hgvsp: ENSP00000324263.10:p.Ile99Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*133T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*518T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.219T>G
  hgvsp: ENSP00000390611.2:p.Cys74Gly
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.372T>G
  hgvsp: ENSP00000431476.1:p.Ile124Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.360T>G
  hgvsp: ENSP00000324328.7:p.Ile120Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*133T>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1407T>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile166Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-17201195-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201195
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201195
    reference: chr 10
allele count: 2
allele frequency: 1.649566164098842e-5
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.429C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.421C>T
  hgvsp: ENSP00000409354.3:p.Leu141Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*128C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*513C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.355C>T
  hgvsp: ENSP00000324328.7:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*128C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.278C>T
  hgvsp: ENSP00000366996.5:p.Ser93Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.291C>T
  hgvsp: ENSP00000324263.10:p.Leu98Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.250C>T
  hgvsp: ENSP00000412256.2:p.Leu84Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.493C>T
  hgvsp: ENSP00000367030.3:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1412C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.367C>T
  hgvsp: ENSP00000431476.1:p.Leu123Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.214C>T
  hgvsp: ENSP00000390611.2:p.Ser72Phe
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu165Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-17201203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201203
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201203
    reference: chr 10
allele count: 4
allele frequency: 3.299404457495422e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.413G>A
  hgvsp: ENSP00000409354.3:p.Arg138Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.206G>A
  hgvsp: ENST00000436968.2:c.206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.270G>A
  hgvsp: ENST00000377766.5:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.421G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.359G>A
  hgvsp: ENSP00000431476.1:p.Arg120Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.485G>A
  hgvsp: ENSP00000367030.3:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*120G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1420G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.347G>A
  hgvsp: ENSP00000324328.7:p.Arg116Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.283G>A
  hgvsp: ENSP00000324263.10:p.Arg95Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*505G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.242G>A
  hgvsp: ENSP00000412256.2:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*120G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*150G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg162Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-17201204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201204
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201204
    reference: chr 10
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.241C>T
  hgvsp: ENSP00000412256.2:p.Arg81Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.484C>T
  hgvsp: ENSP00000367030.3:p.Arg162Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.412C>T
  hgvsp: ENSP00000409354.3:p.Arg138Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.358C>T
  hgvsp: ENSP00000431476.1:p.Arg120Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.205C>T
  hgvsp: ENSP00000390611.2:p.Thr69Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.282C>T
  hgvsp: ENSP00000324263.10:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.269C>T
  hgvsp: ENSP00000366996.5:p.Thr90Met
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.420C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*119C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.346C>T
  hgvsp: ENSP00000324328.7:p.Arg116Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1421C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*504C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*119C>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg162Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-17201206-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201206
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201206
    reference: chr 10
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*147T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.267T>C
  hgvsp: ENST00000377766.5:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.482T>C
  hgvsp: ENSP00000367030.3:p.Leu161Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.344T>C
  hgvsp: ENSP00000324328.7:p.Leu115Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.239T>C
  hgvsp: ENSP00000412256.2:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*502T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.203T>C
  hgvsp: ENST00000436968.2:c.203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*117T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.410T>C
  hgvsp: ENSP00000409354.3:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.418T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.356T>C
  hgvsp: ENSP00000431476.1:p.Leu119Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1423T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*117T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.280T>C
  hgvsp: ENSP00000324263.10:p.Leu94Pro
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu161Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-17201228-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201228
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201228
    reference: chr 10
allele count: 5
allele frequency: 4.129364738528625e-5
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322C>A
  hgvsp: ENSP00000324328.7:p.Leu108Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181C>A
  hgvsp: ENSP00000390611.2:p.Ser61Tyr
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245C>A
  hgvsp: ENSP00000366996.5:p.Ser82Tyr
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217C>A
  hgvsp: ENSP00000412256.2:p.Leu73Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460C>A
  hgvsp: ENSP00000367030.3:p.Leu154Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334C>A
  hgvsp: ENSP00000431476.1:p.Leu112Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258C>A
  hgvsp: ENSP00000324263.10:p.Leu87Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1445C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388C>A
  hgvsp: ENSP00000409354.3:p.Leu130Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95C>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu154Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-17201229-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201229
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201229
    reference: chr 10
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1446G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-1G>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-1G>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.460-1G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

10-17201232-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201232
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201232
    reference: chr 10
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-4A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1449A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.460-4A>G
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

10-17201235-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201235
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201235
    reference: chr 10
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1452C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-7C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-7C>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.460-7C>A
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

10-17201247-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201247
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201247
    reference: chr 10
allele count: 16639
allele frequency: 1.378793152024395e-1
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1464T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-19T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-19T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.75e1
  variant carriers: 867
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 436
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 9.75e1
  variant carriers: 1259
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 3.25e1
  variant carriers: 737
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 2.75e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 1080
genotype depth: GenotypeDepth
  all individuals: 29689
  bin: 2.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 1103
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 6.25e1
  variant carriers: 1512
genotype quality: GenotypeQuality
num of homozygotes: 1280
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

10-17201249-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201249
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201249
    reference: chr 10
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1466A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-21A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-21A>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

10-17201255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201255
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201255
    reference: chr 10
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1472T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-17201258-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201258
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201258
    reference: chr 10
allele count: 3
allele frequency: 2.49513448774889e-5
allele num: 120234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1475G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-30G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-30G>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28938
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

10-17201258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201258
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201258
    reference: chr 10
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1475G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-30G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-30G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

10-17201265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201265
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201265
    reference: chr 10
allele count: 1
allele frequency: 8.323761008173934e-6
allele num: 120138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1482T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-37T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-37T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

10-17201266-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201266
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201266
    reference: chr 10
allele count: 33
allele frequency: 2.748534115138593e-4
allele num: 120064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1483A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-38A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-38A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-17201267-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201267
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201265
    reference: chr 10
allele count: 7
allele frequency: 5.834208464603024e-5
allele num: 119982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-41_*125-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-41_258-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-41_217-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-41_322-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-41_181-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-41_*95-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-41_*95-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-41_396-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-41_245-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-41_*480-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-41_334-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-41_460-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-41_388-40delTT
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1486_175-1485delTT
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: TAA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

10-17201272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201272
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201272
    reference: chr 10
allele count: 2
allele frequency: 1.669839361453428e-5
allele num: 119772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1489T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-44T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-44T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

10-17201276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201276
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201276
    reference: chr 10
allele count: 3
allele frequency: 2.518976288036542e-5
allele num: 119096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1493G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-48G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-48G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

10-17201277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17201277
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17201277
    reference: chr 10
allele count: 30
allele frequency: 2.514837541494819e-4
allele num: 119292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*95-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.245-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.217-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*125-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*480-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-1494C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.181-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*95-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.258-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.396-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.334-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.460-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.322-49C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.388-49C>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26447
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

10-17202253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202253
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202253
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 28856
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2470T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+51T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+51T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20639
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

10-17202256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202256
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202256
    reference: chr 10
allele count: 6
allele frequency: 2.07785011774484e-4
allele num: 28876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2473T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+48T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+48T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20687
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22863
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

10-17202274-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202274
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202274
    reference: chr 10
allele count: 1
allele frequency: 3.282347534957001e-5
allele num: 30466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2491A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+30A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+30A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

10-17202277-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202277
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202277
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 31302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2494T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+27T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+27T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29706
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

10-17202283-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202283
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202283
    reference: chr 10
allele count: 1
allele frequency: 2.914941992654346e-5
allele num: 34306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+21T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2500T>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+21T>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

10-17202288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202288
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202288
    reference: chr 10
allele count: 1
allele frequency: 2.683411152256749e-5
allele num: 37266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2505A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+16A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+16A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33913
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

10-17202291-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202291
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202291
    reference: chr 10
allele count: 1
allele frequency: 2.517876926175849e-5
allele num: 39716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2508G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+13G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+13G>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

10-17202291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202291
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202291
    reference: chr 10
allele count: 3
allele frequency: 7.553630778527546e-5
allele num: 39716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2508G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+13G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+13G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-17202293-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202293
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202293
    reference: chr 10
allele count: 2
allele frequency: 4.816259692722631e-5
allele num: 41526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2510C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+11C>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+11C>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

10-17202297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202297
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202297
    reference: chr 10
allele count: 1
allele frequency: 2.217098261794963e-5
allele num: 45104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+7A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2514A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+7A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.459+7A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS

10-17202300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202300
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202300
    reference: chr 10
allele count: 1
allele frequency: 2.066798941798942e-5
allele num: 48384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.395+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*94+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.321+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.257+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*124+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*479+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*94+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.216+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.180+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.244+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2517G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.459+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.387+4G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.333+4G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.459+4G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

10-17202307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202307
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202307
    reference: chr 10
allele count: 1
allele frequency: 1.756604834176504e-5
allele num: 56928
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.456C>T
  hgvsp: ENST00000377799.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.241C>T
  hgvsp: ENSP00000366996.5:p.Leu81Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.318C>T
  hgvsp: ENST00000351358.4:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.177C>T
  hgvsp: ENSP00000390611.2:p.Leu60Phe
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.213C>T
  hgvsp: ENST00000457442.2:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*121C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*91C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.384C>T
  hgvsp: ENST00000412821.3:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*91C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.254C>T
  hgvsp: ENST00000313936.10:c.254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2524C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*476C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.330C>T
  hgvsp: ENST00000525762.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.392C>T
  variant of: http://identifiers.org/hgnc/2977
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu81Phe
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-17202308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202308
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202308
    reference: chr 10
allele count: 1
allele frequency: 1.724137931034483e-5
allele num: 58000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.329C>T
  hgvsp: ENSP00000431476.1:p.Thr110Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.383C>T
  hgvsp: ENSP00000409354.3:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.317C>T
  hgvsp: ENSP00000324328.7:p.Thr106Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.253C>T
  hgvsp: ENSP00000324263.10:p.Thr85Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*90C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*120C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.176C>T
  hgvsp: ENST00000436968.2:c.176C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2525C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.455C>T
  hgvsp: ENSP00000367030.3:p.Thr152Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.212C>T
  hgvsp: ENSP00000412256.2:p.Thr71Ile
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.240C>T
  hgvsp: ENST00000377766.5:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.391C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*475C>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*90C>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr152Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-17202309-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202309
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202309
    reference: chr 10
allele count: 1
allele frequency: 1.70264932234557e-5
allele num: 58732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*89A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.328A>G
  hgvsp: ENSP00000431476.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.390A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*119A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*89A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.454A>G
  hgvsp: ENSP00000367030.3:p.Thr152Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.382A>G
  hgvsp: ENSP00000409354.3:p.Thr128Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.316A>G
  hgvsp: ENSP00000324328.7:p.Thr106Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.211A>G
  hgvsp: ENSP00000412256.2:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.252A>G
  hgvsp: ENSP00000324263.10:p.Thr85Ala
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*474A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.239A>G
  hgvsp: ENSP00000366996.5:p.Asn80Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2526A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.175A>G
  hgvsp: ENSP00000390611.2:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr152Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

10-17202309-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202309
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202309
    reference: chr 10
allele count: 1
allele frequency: 1.70264932234557e-5
allele num: 58732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.382A>C
  hgvsp: ENSP00000409354.3:p.Thr128Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2526A>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.454A>C
  hgvsp: ENSP00000367030.3:p.Thr152Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.211A>C
  hgvsp: ENSP00000412256.2:p.Thr71Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*119A>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*89A>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.252A>C
  hgvsp: ENSP00000324263.10:p.Thr85Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*474A>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.328A>C
  hgvsp: ENSP00000431476.1:p.Thr110Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.390A>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.175A>C
  hgvsp: ENSP00000390611.2:p.Asn59Thr
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.316A>C
  hgvsp: ENSP00000324328.7:p.Thr106Pro
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.239A>C
  hgvsp: ENSP00000366996.5:p.Asn80Thr
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*89A>C
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28300
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr152Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

10-17202319-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202319
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202319
    reference: chr 10
allele count: 2
allele frequency: 3.202972358348548e-5
allele num: 62442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.165A>G
  hgvsp: ENSP00000390611.2:p.Ile56Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.318A>G
  hgvsp: ENST00000525762.1:c.318A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*464A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.306A>G
  hgvsp: ENST00000351358.4:c.306A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.242A>G
  hgvsp: ENST00000313936.10:c.242A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.380A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.444A>G
  hgvsp: ENST00000377799.3:c.444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.229A>G
  hgvsp: ENSP00000366996.5:p.Ile77Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.372A>G
  hgvsp: ENST00000412821.3:c.372A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.201A>G
  hgvsp: ENST00000457442.2:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*79A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*79A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2536A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*109A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile77Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

10-17202329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202329
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202329
    reference: chr 10
allele count: 1
allele frequency: 1.53003457878148e-5
allele num: 65358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2546A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.362A>G
  hgvsp: ENSP00000409354.3:p.Gln121Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.434A>G
  hgvsp: ENSP00000367030.3:p.Gln145Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*454A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.191A>G
  hgvsp: ENSP00000412256.2:p.Gln64Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*69A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.296A>G
  hgvsp: ENSP00000324328.7:p.Gln99Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.308A>G
  hgvsp: ENSP00000431476.1:p.Gln103Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.219A>G
  hgvsp: ENST00000377766.5:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.232A>G
  hgvsp: ENSP00000324263.10:p.Gln78Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.370A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*99A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.155A>G
  hgvsp: ENST00000436968.2:c.155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*69A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln145Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

10-17202334-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202334
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202334
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 65956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.214G>C
  hgvsp: ENSP00000366996.5:p.Val72Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*94G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.227G>C
  hgvsp: ENSP00000324263.10:p.Gln76His
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*449G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*64G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.357G>C
  hgvsp: ENSP00000409354.3:p.Gln119His
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.186G>C
  hgvsp: ENSP00000412256.2:p.Gln62His
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.291G>C
  hgvsp: ENSP00000324328.7:p.Gln97His
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.150G>C
  hgvsp: ENSP00000390611.2:p.Val51Leu
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.429G>C
  hgvsp: ENSP00000367030.3:p.Gln143His
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.365G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2551G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*64G>C
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.303G>C
  hgvsp: ENSP00000431476.1:p.Gln101His
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln143His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-17202335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202335
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202335
    reference: chr 10
allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.302A>G
  hgvsp: ENSP00000431476.1:p.Gln101Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.364A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.428A>G
  hgvsp: ENSP00000367030.3:p.Gln143Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.226A>G
  hgvsp: ENSP00000324263.10:p.Gln76Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.356A>G
  hgvsp: ENSP00000409354.3:p.Gln119Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*63A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.149A>G
  hgvsp: ENST00000436968.2:c.149A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.290A>G
  hgvsp: ENSP00000324328.7:p.Gln97Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.213A>G
  hgvsp: ENST00000377766.5:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*93A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2552A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.185A>G
  hgvsp: ENSP00000412256.2:p.Gln62Arg
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*448A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*63A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln143Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

10-17202341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202341
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202341
    reference: chr 10
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.358G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*87G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.296G>A
  hgvsp: ENSP00000431476.1:p.Gly99Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.350G>A
  hgvsp: ENSP00000409354.3:p.Gly117Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.284G>A
  hgvsp: ENSP00000324328.7:p.Gly95Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*57G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.207G>A
  hgvsp: ENSP00000366996.5:p.Trp69Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.143G>A
  hgvsp: ENSP00000390611.2:p.Trp48Ter
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.179G>A
  hgvsp: ENSP00000412256.2:p.Gly60Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.422G>A
  hgvsp: ENSP00000367030.3:p.Gly141Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.220G>A
  hgvsp: ENSP00000324263.10:p.Gly74Asp
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*57G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*442G>A
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2558G>A
  variant of: http://identifiers.org/hgnc/2977
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp69Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-17202350-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202350
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202350
    reference: chr 10
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*48A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.275A>T
  hgvsp: ENSP00000324328.7:p.Glu92Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.287A>T
  hgvsp: ENSP00000431476.1:p.Glu96Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.413A>T
  hgvsp: ENSP00000367030.3:p.Glu138Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.198A>T
  hgvsp: ENSP00000366996.5:p.Arg66Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*433A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*78A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.341A>T
  hgvsp: ENSP00000409354.3:p.Glu114Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.170A>T
  hgvsp: ENSP00000412256.2:p.Glu57Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.134A>T
  hgvsp: ENSP00000390611.2:p.Arg45Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2567A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.211A>T
  hgvsp: ENSP00000324263.10:p.Glu71Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.349A>T
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*48A>T
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu138Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

10-17202354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17202354
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 17202354
    reference: chr 10
allele count: 2
allele frequency: 3.026359592046727e-5
allele num: 66086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107614
  ensembl transcript: ENST00000452380
  gene symbol: TRDMT1
  hgvsc: ENST00000452380.2:n.345A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000419625
  ensembl transcript: ENST00000488990
  gene symbol: TRDMT1
  hgvsc: ENST00000488990.1:c.175-2571A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000390611
  ensembl transcript: ENST00000436968
  gene symbol: TRDMT1
  hgvsc: ENST00000436968.2:c.130A>G
  hgvsp: ENSP00000390611.2:p.Asn44Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000409354
  ensembl transcript: ENST00000412821
  gene symbol: TRDMT1
  hgvsc: ENST00000412821.3:c.337A>G
  hgvsp: ENSP00000409354.3:p.Ile113Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000367030
  ensembl transcript: ENST00000377799
  gene symbol: TRDMT1
  hgvsc: ENST00000377799.3:c.409A>G
  hgvsp: ENSP00000367030.3:p.Ile137Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000351027
  ensembl transcript: ENST00000358282
  gene symbol: TRDMT1
  hgvsc: ENST00000358282.7:c.*44A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324263
  ensembl transcript: ENST00000313936
  gene symbol: TRDMT1
  hgvsc: ENST00000313936.10:c.207A>G
  hgvsp: ENSP00000324263.10:p.Ile70Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000417594
  ensembl transcript: ENST00000495022
  gene symbol: TRDMT1
  hgvsc: ENST00000495022.1:c.*74A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000366996
  ensembl transcript: ENST00000377766
  gene symbol: TRDMT1
  hgvsc: ENST00000377766.5:c.194A>G
  hgvsp: ENSP00000366996.5:p.Asn65Ser
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000431476
  ensembl transcript: ENST00000525762
  gene symbol: TRDMT1
  hgvsc: ENST00000525762.1:c.283A>G
  hgvsp: ENSP00000431476.1:p.Ile95Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000412256
  ensembl transcript: ENST00000457442
  gene symbol: TRDMT1
  hgvsc: ENST00000457442.2:c.166A>G
  hgvsp: ENSP00000412256.2:p.Ile56Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000324328
  ensembl transcript: ENST00000351358
  gene symbol: TRDMT1
  hgvsc: ENST00000351358.4:c.271A>G
  hgvsp: ENSP00000324328.7:p.Ile91Val
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000389497
  ensembl transcript: ENST00000424636
  gene symbol: TRDMT1
  hgvsc: ENST00000424636.2:c.*44A>G
  variant of: http://identifiers.org/hgnc/2977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000107614
  ensembl protein: ENSP00000346652
  ensembl transcript: ENST00000354631
  gene symbol: TRDMT1
  hgvsc: ENST00000354631.3:c.*429A>G
  variant of: http://identifiers.org/hgnc/2977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile137Val
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 474
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5054
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1964
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.160667214035694e-5
allele num: 46282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 9.01022e5

QD
type: SiteQuality
SIO_000300: 1.037e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

FS
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 25359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1502
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.328254847645429e-5
allele num: 46208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 8.01e0

DP
type: SiteQuality
SIO_000300: 8.97589e5

GenotypeQuality
all individuals: 1738
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313370107696349e-4
allele num: 7614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.186e0

DP
type: SiteQuality
SIO_000300: 8.82377e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 2.334e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
all individuals: 2422
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.27966990379793e-5
allele num: 43866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.043e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 5.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

DP
type: SiteQuality
SIO_000300: 8.54963e5

GenotypeQuality
all individuals: 22638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 6.25e1
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GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.605323754259925e-5
allele num: 43428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.825e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.519e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

DP
type: SiteQuality
SIO_000300: 8.47991e5

GenotypeQuality
all individuals: 527
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.37146651489281e-5
allele num: 42168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.242e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

QD
type: SiteQuality
SIO_000300: 1.783e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.186e0

DP
type: SiteQuality
SIO_000300: 8.36892e5

MQ
type: SiteQuality
SIO_000300: 5.804e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
all individuals: 2961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 613
bin: 2.5e0
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GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 3952
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6360
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7101
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.463782398738544e-5
allele num: 40588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.994e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 8.21143e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 717

GenotypeQuality
all individuals: 645
bin: 7.75e1
variant carriers: 452

GenotypeQuality
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bin: 3.75e1
variant carriers: 604

GenotypeQuality
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bin: 2.5e0
variant carriers: 79

GenotypeQuality
all individuals: 2850
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variant carriers: 439

GenotypeQuality
all individuals: 1305
bin: 6.25e1
variant carriers: 329

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 713

GenotypeQuality
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bin: 1.75e1
variant carriers: 760

GenotypeQuality
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bin: 4.75e1
variant carriers: 653

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 739

GenotypeQuality
all individuals: 4652
bin: 7.5e0
variant carriers: 256

GenotypeQuality
all individuals: 3714
bin: 3.25e1
variant carriers: 665

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 274

GenotypeQuality
all individuals: 1040
bin: 4.25e1
variant carriers: 384

GenotypeQuality
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bin: 8.25e1
variant carriers: 583

GenotypeQuality
all individuals: 514
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variant carriers: 483

GenotypeQuality
all individuals: 544
bin: 6.75e1
variant carriers: 238

GenotypeQuality
all individuals: 9805
bin: 2.25e1
variant carriers: 893

GenotypeQuality
all individuals: 16449
bin: 9.75e1
variant carriers: 15558

Latino
type: Population
allele count: 1051
allele frequency: 1.691886670959433e-1
allele num: 6212
num of homozygotes: 95

Other
type: Population
allele count: 171
allele frequency: 2.979094076655052e-1
allele num: 574
num of homozygotes: 27

European (Finnish)
type: Population
allele count: 1342
allele frequency: 2.578785549577248e-1
allele num: 5204
num of homozygotes: 166

European (Non-Finnish)
type: Population
allele count: 13304
allele frequency: 3.488018457343611e-1
allele num: 38142
num of homozygotes: 2120

East Asian
type: Population
allele count: 1252
allele frequency: 2.341062079281974e-1
allele num: 5348
num of homozygotes: 137

South Asian
type: Population
allele count: 1543
allele frequency: 2.475930680359435e-1
allele num: 6232
num of homozygotes: 191

African
type: Population
allele count: 1942
allele frequency: 2.773493287632105e-1
allele num: 7002
num of homozygotes: 241

DP
type: SiteQuality
SIO_000300: 8.3175e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 2.139e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1257
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variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.97163e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 2.027e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.066201082689367e-5
allele num: 48398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.509e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.94e0

MQ
type: SiteQuality
SIO_000300: 5.334e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

DP
type: SiteQuality
SIO_000300: 1.153319e6

QD
type: SiteQuality
SIO_000300: 1.73e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 678
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variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
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GenotypeQuality
all individuals: 1763
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GenotypeQuality
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GenotypeQuality
all individuals: 5341
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5668
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European (Non-Finnish)
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allele frequency: 1.973632272834926e-5
allele num: 50668
num of homozygotes: 0

ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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SIO_000300: 5.23e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.484460694698354e-4
allele num: 10940
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.75753102042251e-5
allele num: 56898
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: -8.47e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.814521125015488e-4
allele num: 16142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -9.05e-1

MQRankSum
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519341213649761e-5
allele num: 65818
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.532622e6

FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 2.01e0

BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

FS
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ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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QD
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

European (Non-Finnish)
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African
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Other
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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FS
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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MQ
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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African
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South Asian
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QD
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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QD
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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DP
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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Other
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African
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South Asian
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DP
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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DP
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ReadPosRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

VQSLOD
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SIO_000300: -1.443e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.41e1

BaseQRankSum
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SIO_000300: -2.81e-1

MQRankSum
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SIO_000300: -2.066e0

DP
type: SiteQuality
SIO_000300: 1.549971e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.222e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQRankSum
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SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 1.066e0

DP
type: SiteQuality
SIO_000300: 1.548508e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
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SIO_000300: 1.05e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2107
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.628e0

QD
type: SiteQuality
SIO_000300: 7.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.545574e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -7.769e-1

GenotypeDepth
all individuals: 1580
bin: 4.75e1
variant carriers: 1264

GenotypeDepth
all individuals: 654
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variant carriers: 598

GenotypeDepth
all individuals: 1647
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variant carriers: 1448

GenotypeDepth
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variant carriers: 887

GenotypeDepth
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variant carriers: 1353

GenotypeDepth
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variant carriers: 1526

GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 16
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15221

GenotypeQuality
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variant carriers: 16

GenotypeQuality
all individuals: 29042
bin: 6.25e1
variant carriers: 13

South Asian
type: Population
allele count: 1773
allele frequency: 1.088397790055249e-1
allele num: 16290
num of homozygotes: 85

European (Finnish)
type: Population
allele count: 1246
allele frequency: 1.889023650697392e-1
allele num: 6596
num of homozygotes: 109

European (Non-Finnish)
type: Population
allele count: 9628
allele frequency: 1.449519737436392e-1
allele num: 66422
num of homozygotes: 762

East Asian
type: Population
allele count: 294
allele frequency: 3.412256267409471e-2
allele num: 8616
num of homozygotes: 7

Other
type: Population
allele count: 121
allele frequency: 1.347438752783964e-1
allele num: 898
num of homozygotes: 9

Latino
type: Population
allele count: 2454
allele frequency: 2.122837370242215e-1
allele num: 11560
num of homozygotes: 260

African
type: Population
allele count: 1123
allele frequency: 1.090714840714841e-1
allele num: 10296
num of homozygotes: 48

QD
type: SiteQuality
SIO_000300: 1.645e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e0

InbreedingCoeff
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SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 2.084708e6

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1066
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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ClippingRankSum
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SIO_000300: -3.37e-1

DP
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
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SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664249e6

ClippingRankSum
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MQRankSum
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SIO_000300: 2.33e-1

InbreedingCoeff
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SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 4.82e0

VQSLOD
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SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 1.965e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele frequency: 2.925687536571094e-4
allele num: 10254
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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MQ
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BaseQRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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SIO_000300: 1.659995e6

InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

African
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East Asian
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Other
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66224
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

East Asian
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QD
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 1.639092e6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 33
allele frequency: 4.984894259818731e-4
allele num: 66200
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

South Asian
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African
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East Asian
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Other
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European (Finnish)
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allele count: 0
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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QD
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Latino
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Other
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.461334678945376e-4
allele num: 15854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.125140411062874e-4
allele num: 65878
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.879470460383324e-5
allele num: 10122
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
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SIO_000300: 1.19e-1

ClippingRankSum
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SIO_000300: -1.66e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -7.43e-1

QD
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SIO_000300: 1.548e1

VQSLOD
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SIO_000300: 5.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.61123e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.88826e5

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -3.97e-2

ClippingRankSum
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SIO_000300: -3.22e-1

ReadPosRankSum
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SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 4.686035613870666e-4
allele num: 12804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

FS
type: SiteQuality
SIO_000300: 2.248e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -3.81e-2

BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.94546e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.383343177790904e-5
allele num: 13544
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.78e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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allele num: 3554
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 5.911563017261764e-5
allele num: 16916
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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DP
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele num: 2290
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Latino
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South Asian
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FS
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.103630945811721e-4
allele num: 18122
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.169668040789759e-4
allele num: 9218
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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Other
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European (Non-Finnish)
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African
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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DP
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 3.616636528028933e-5
allele num: 27650
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 28066
num of homozygotes: 0

Other
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 30080
num of homozygotes: 0

European (Finnish)
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Latino
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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Other
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MQ
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VQSLOD
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BaseQRankSum
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DP
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FS
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.10096750186058e-5
allele num: 32248
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.88014e5

VQSLOD
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InbreedingCoeff
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SIO_000300: -7.7e-3

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

MQ
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ClippingRankSum
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SIO_000300: -6.33e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 11174
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InbreedingCoeff
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SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
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DP
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SIO_000300: 9.60817e5

FS
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SIO_000300: 3.101e0

MQ
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SIO_000300: 5.938e1

MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3618
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
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allele num: 7548
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East Asian
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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SIO_000300: -1.719e0

QD
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SIO_000300: 1.406e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0