12-45105170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105170
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105170
    reference: chr 12
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1091C>T
  hgvsp: ENSP00000378866.2:p.Thr364Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1163C>T
  hgvsp: ENSP00000327988.4:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1094C>T
  hgvsp: ENSP00000390680.2:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1091C>T
  hgvsp: ENSP00000449332.1:p.Thr364Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1091C>T
  hgvsp: ENSP00000447927.1:p.Thr364Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1094C>T
  hgvsp: ENSP00000394612.2:p.Thr365Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.325C>T
  hgvsp: ENSP00000448407.1:p.Thr109Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1540C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1244C>T
  hgvsp: ENSP00000416341.2:p.Thr415Ile
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr415Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

12-45105180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105180
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105180
    reference: chr 12
allele count: 2
allele frequency: 1.666722224074136e-5
allele num: 119996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-3C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-3C>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1237-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/12-45105189-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105189
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105189
    reference: chr 12
allele count: 3
allele frequency: 2.514205259717403e-5
allele num: 119322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-12G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-12G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29496
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

12-45105196-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105196
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105196
    reference: chr 12
allele count: 7
allele frequency: 5.899605569227657e-5
allele num: 118652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-19C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-19C>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

12-45105201-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105201
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105201
    reference: chr 12
allele count: 1
allele frequency: 8.462671157524161e-6
allele num: 118166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-24C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-24C>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24674
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-45105206-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105206
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105206
    reference: chr 12
allele count: 1
allele frequency: 8.499932000543996e-6
allele num: 117648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-29T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-29T>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

12-45105207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105207
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105207
    reference: chr 12
allele count: 1
allele frequency: 8.50210001870462e-6
allele num: 117618
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-30T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-30T>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

12-45105209-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105209
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105209
    reference: chr 12
allele count: 2
allele frequency: 1.703142297538959e-5
allele num: 117430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-32A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-32A>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19877
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-45105215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105215
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105215
    reference: chr 12
allele count: 1
allele frequency: 8.575740944017563e-6
allele num: 116608
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-38G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-38G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21545
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-45105222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45105222
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45105222
    reference: chr 12
allele count: 1
allele frequency: 8.664309974353643e-6
allele num: 115416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1156-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.318-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1533-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1237-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1087-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1084-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1087-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1084-45T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1084-45T>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

12-45108382-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108382
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108380
    reference: chr 12
allele count: 10
allele frequency: 8.709587513935341e-5
allele num: 114816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+49_1086+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+49_1083+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+49_1236+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+49_1532+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+49_1083+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+49_1083+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+49_1086+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+49_317+50delAA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+49_1155+50delAA
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14012
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: CTT
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

12-45108383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108383
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108383
    reference: chr 12
allele count: 1
allele frequency: 8.697013445582787e-6
allele num: 114982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+50A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+50A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

12-45108385-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108385
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108384
    reference: chr 12
allele count: 1
allele frequency: 8.714596949891067e-6
allele num: 114750
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+47delA
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+47delA
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15097
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: GT
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-45108390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108390
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108390
    reference: chr 12
allele count: 1
allele frequency: 8.681459874292461e-6
allele num: 115188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+43A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+43A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/12-45108392-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108392
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108392
    reference: chr 12
allele count: 2
allele frequency: 1.735117033643919e-5
allele num: 115266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+41T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+41T>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/12-45108397-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108397
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108397
    reference: chr 12
allele count: 6970
allele frequency: 6.008931496456713e-2
allele num: 115994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+36T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+36T>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 22586
  bin: 2.25e1
  variant carriers: 939
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 1.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 1095
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.75e1
  variant carriers: 495
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 3.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 751
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35429
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 5
num of homozygotes: 292
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

12-45108397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108397
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108397
    reference: chr 12
allele count: 1
allele frequency: 8.621135575978068e-6
allele num: 115994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+36T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+36T>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/12-45108400-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108400
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108400
    reference: chr 12
allele count: 2
allele frequency: 1.717150903221375e-5
allele num: 116472
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+33G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+33G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23955
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-45108402-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108402
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108402
    reference: chr 12
allele count: 1
allele frequency: 8.557980316645272e-6
allele num: 116850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+31T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+31T>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

12-45108412-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108412
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108412
    reference: chr 12
allele count: 1
allele frequency: 8.444234276835777e-6
allele num: 118424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+21T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+21T>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-45108413-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108413
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108413
    reference: chr 12
allele count: 1
allele frequency: 8.435970980259829e-6
allele num: 118540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+20G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+20G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44487
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/12-45108414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108414
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108414
    reference: chr 12
allele count: 3
allele frequency: 2.527678074920378e-5
allele num: 118686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+19G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+19G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/12-45108417-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108417
    reference: chr 12
allele count: 1
allele frequency: 8.399973120086016e-6
allele num: 119048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+16G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+16G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-45108417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108417
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108417
    reference: chr 12
allele count: 8
allele frequency: 6.719978496068813e-5
allele num: 119048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+16G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+16G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-45108424-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108424
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108424
    reference: chr 12
allele count: 1
allele frequency: 8.36050497450046e-6
allele num: 119610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+9A>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/12-45108425-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108425
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108425
    reference: chr 12
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+8G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+8G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1236+8G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

12-45108425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108425
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108425
    reference: chr 12
allele count: 1
allele frequency: 8.356732183446986e-6
allele num: 119664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+8G>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+8G>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18109
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1236+8G>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-45108427-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108427
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108427
    reference: chr 12
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1532+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1086+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1083+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1083+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1236+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.317+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1155+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1083+6A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1086+6A>T
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1236+6A>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-45108443-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108443
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108443
    reference: chr 12
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1226A>G
  hgvsp: ENSP00000416341.2:p.Tyr409Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1076A>G
  hgvsp: ENSP00000390680.2:p.Tyr359Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1073A>G
  hgvsp: ENSP00000447927.1:p.Tyr358Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1073A>G
  hgvsp: ENSP00000378866.2:p.Tyr358Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1522A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1145A>G
  hgvsp: ENSP00000327988.4:p.Tyr382Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1073A>G
  hgvsp: ENSP00000449332.1:p.Tyr358Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.307A>G
  hgvsp: ENSP00000448407.1:p.Tyr103Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1076A>G
  hgvsp: ENSP00000394612.2:p.Tyr359Cys
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr409Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

12-45108451-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108451
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108451
    reference: chr 12
allele count: 2
allele frequency: 1.661847309469206e-5
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1137T>C
  hgvsp: ENST00000333837.4:c.1137T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1514T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1068T>C
  hgvsp: ENST00000429094.2:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1065T>C
  hgvsp: ENST00000395487.2:c.1065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1065T>C
  hgvsp: ENST00000549027.1:c.1065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1065T>C
  hgvsp: ENST00000551601.1:c.1065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1068T>C
  hgvsp: ENST00000452445.2:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.299T>C
  hgvsp: ENST00000550313.1:c.299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1218T>C
  hgvsp: ENST00000437801.2:c.1218T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys406Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

12-45108452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108452
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108452
    reference: chr 12
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.298G>A
  hgvsp: ENSP00000448407.1:p.Cys100Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1064G>A
  hgvsp: ENSP00000447927.1:p.Cys355Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1064G>A
  hgvsp: ENSP00000449332.1:p.Cys355Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1064G>A
  hgvsp: ENSP00000378866.2:p.Cys355Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1067G>A
  hgvsp: ENSP00000394612.2:p.Cys356Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1136G>A
  hgvsp: ENSP00000327988.4:p.Cys379Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1067G>A
  hgvsp: ENSP00000390680.2:p.Cys356Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1217G>A
  hgvsp: ENSP00000416341.2:p.Cys406Tyr
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1513G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys406Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-45108470-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108470
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108470
    reference: chr 12
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1046A>G
  hgvsp: ENSP00000449332.1:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1046A>G
  hgvsp: ENSP00000447927.1:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1495A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1049A>G
  hgvsp: ENSP00000390680.2:p.Tyr350Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1118A>G
  hgvsp: ENSP00000327988.4:p.Tyr373Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1046A>G
  hgvsp: ENSP00000378866.2:p.Tyr349Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1199A>G
  hgvsp: ENSP00000416341.2:p.Tyr400Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.280A>G
  hgvsp: ENSP00000448407.1:p.Tyr94Cys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1049A>G
  hgvsp: ENSP00000394612.2:p.Tyr350Cys
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr400Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

12-45108472-G-GACTGTATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108472
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108481
    reference: chr 12
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: GACTGTATTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.269_277dupAAATACAGT
  hgvsp: ENSP00000448407.1:p.Asn91_Val93dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsp: ENSP00000416341.2:p.Asn397_Val399dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsp: ENSP00000327988.4:p.Asn370_Val372dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsp: ENSP00000449332.1:p.Asn346_Val348dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsp: ENSP00000378866.2:p.Asn346_Val348dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsp: ENSP00000447927.1:p.Asn346_Val348dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsp: ENSP00000394612.2:p.Asn347_Val349dup
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsp: ENSP00000390680.2:p.Asn347_Val349dup
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn397_Val399dup
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

12-45108473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108473
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108473
    reference: chr 12
allele count: 3
allele frequency: 2.489791853401056e-5
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1043T>A
  hgvsp: ENSP00000378866.2:p.Val348Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1196T>A
  hgvsp: ENSP00000416341.2:p.Val399Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1043T>A
  hgvsp: ENSP00000449332.1:p.Val348Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1115T>A
  hgvsp: ENSP00000327988.4:p.Val372Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.277T>A
  hgvsp: ENSP00000448407.1:p.Val93Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1492T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1046T>A
  hgvsp: ENSP00000394612.2:p.Val349Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1046T>A
  hgvsp: ENSP00000390680.2:p.Val349Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1043T>A
  hgvsp: ENSP00000447927.1:p.Val348Asp
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28429
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val399Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

12-45108476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108476
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108476
    reference: chr 12
allele count: 10
allele frequency: 8.299030673217368e-5
allele num: 120496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1040C>T
  hgvsp: ENSP00000378866.2:p.Thr347Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.274C>T
  hgvsp: ENSP00000448407.1:p.Thr92Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1043C>T
  hgvsp: ENSP00000390680.2:p.Thr348Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1193C>T
  hgvsp: ENSP00000416341.2:p.Thr398Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1040C>T
  hgvsp: ENSP00000449332.1:p.Thr347Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1489C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1040C>T
  hgvsp: ENSP00000447927.1:p.Thr347Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1043C>T
  hgvsp: ENSP00000394612.2:p.Thr348Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1112C>T
  hgvsp: ENSP00000327988.4:p.Thr371Ile
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr398Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

12-45108480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108480
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108480
    reference: chr 12
allele count: 4866
allele frequency: 4.038643493849908e-2
allele num: 120486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1108A>G
  hgvsp: ENSP00000327988.4:p.Asn370Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1036A>G
  hgvsp: ENSP00000447927.1:p.Asn346Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.270A>G
  hgvsp: ENSP00000448407.1:p.Asn91Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1485A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1036A>G
  hgvsp: ENSP00000449332.1:p.Asn346Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1039A>G
  hgvsp: ENSP00000390680.2:p.Asn347Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1036A>G
  hgvsp: ENSP00000378866.2:p.Asn346Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1189A>G
  hgvsp: ENSP00000416341.2:p.Asn397Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1039A>G
  hgvsp: ENSP00000394612.2:p.Asn347Asp
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27418
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 17771
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 9.75e1
  variant carriers: 1132
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 3.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 243
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6111
  bin: 9.75e1
  variant carriers: 4697
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 2
hgvs: p.Asn397Asp
num of homozygotes: 158
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-45108483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108483
    reference: chr 12
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1105A>G
  hgvsp: ENSP00000327988.4:p.Arg369Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1033A>G
  hgvsp: ENSP00000449332.1:p.Arg345Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1033A>G
  hgvsp: ENSP00000447927.1:p.Arg345Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1036A>G
  hgvsp: ENSP00000394612.2:p.Arg346Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1482A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1033A>G
  hgvsp: ENSP00000378866.2:p.Arg345Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1186A>G
  hgvsp: ENSP00000416341.2:p.Arg396Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1036A>G
  hgvsp: ENSP00000390680.2:p.Arg346Gly
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.267A>G
  hgvsp: ENSP00000448407.1:p.Arg90Gly
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg396Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-45108488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108488
    reference: chr 12
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1181G>A
  hgvsp: ENSP00000416341.2:p.Gly394Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1028G>A
  hgvsp: ENSP00000378866.2:p.Gly343Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1031G>A
  hgvsp: ENSP00000390680.2:p.Gly344Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1477G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1028G>A
  hgvsp: ENSP00000447927.1:p.Gly343Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1031G>A
  hgvsp: ENSP00000394612.2:p.Gly344Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1028G>A
  hgvsp: ENSP00000449332.1:p.Gly343Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.262G>A
  hgvsp: ENSP00000448407.1:p.Gly88Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1100G>A
  hgvsp: ENSP00000327988.4:p.Gly367Glu
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly394Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

12-45108489-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108489
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108489
    reference: chr 12
allele count: 3
allele frequency: 2.491115023084333e-5
allele num: 120428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1027G>A
  hgvsp: ENSP00000447927.1:p.Gly343Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1180G>A
  hgvsp: ENSP00000416341.2:p.Gly394Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.261G>A
  hgvsp: ENSP00000448407.1:p.Gly88Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1030G>A
  hgvsp: ENSP00000390680.2:p.Gly344Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1030G>A
  hgvsp: ENSP00000394612.2:p.Gly344Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1027G>A
  hgvsp: ENSP00000378866.2:p.Gly343Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1476G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1099G>A
  hgvsp: ENSP00000327988.4:p.Gly367Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1027G>A
  hgvsp: ENSP00000449332.1:p.Gly343Arg
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly394Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-45108495-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108495
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108495
    reference: chr 12
allele count: 1
allele frequency: 8.308822307526131e-6
allele num: 120354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1021T>A
  hgvsp: ENSP00000447927.1:p.Phe341Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1093T>A
  hgvsp: ENSP00000327988.4:p.Phe365Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1024T>A
  hgvsp: ENSP00000390680.2:p.Phe342Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1470T>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1174T>A
  hgvsp: ENSP00000416341.2:p.Phe392Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1021T>A
  hgvsp: ENSP00000449332.1:p.Phe341Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1021T>A
  hgvsp: ENSP00000378866.2:p.Phe341Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1024T>A
  hgvsp: ENSP00000394612.2:p.Phe342Ile
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.255T>A
  hgvsp: ENSP00000448407.1:p.Phe86Ile
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe392Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

12-45108496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108496
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108496
    reference: chr 12
allele count: 1
allele frequency: 8.309512730173502e-6
allele num: 120344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1092C>T
  hgvsp: ENST00000333837.4:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.254C>T
  hgvsp: ENST00000550313.1:c.254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1020C>T
  hgvsp: ENST00000395487.2:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1469C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1020C>T
  hgvsp: ENST00000551601.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1023C>T
  hgvsp: ENST00000429094.2:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1023C>T
  hgvsp: ENST00000452445.2:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1173C>T
  hgvsp: ENST00000437801.2:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1020C>T
  hgvsp: ENST00000549027.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr391Tyr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

12-45108503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108503
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108503
    reference: chr 12
allele count: 9
allele frequency: 7.488143772360429e-5
allele num: 120190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1013G>A
  hgvsp: ENSP00000447927.1:p.Arg338Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1166G>A
  hgvsp: ENSP00000416341.2:p.Arg389Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1016G>A
  hgvsp: ENSP00000390680.2:p.Arg339Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1013G>A
  hgvsp: ENSP00000378866.2:p.Arg338Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1013G>A
  hgvsp: ENSP00000449332.1:p.Arg338Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.247G>A
  hgvsp: ENSP00000448407.1:p.Arg83Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1462G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1085G>A
  hgvsp: ENSP00000327988.4:p.Arg362Gln
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1016G>A
  hgvsp: ENSP00000394612.2:p.Arg339Gln
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg389Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

12-45108506-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108506
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108506
    reference: chr 12
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1010G>A
  hgvsp: ENSP00000449332.1:p.Gly337Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1010G>A
  hgvsp: ENSP00000447927.1:p.Gly337Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.244G>A
  hgvsp: ENSP00000448407.1:p.Gly82Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1163G>A
  hgvsp: ENSP00000416341.2:p.Gly388Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1013G>A
  hgvsp: ENSP00000394612.2:p.Gly338Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1459G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1082G>A
  hgvsp: ENSP00000327988.4:p.Gly361Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1013G>A
  hgvsp: ENSP00000390680.2:p.Gly338Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1010G>A
  hgvsp: ENSP00000378866.2:p.Gly337Glu
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly388Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

12-45108514-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108514
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108514
    reference: chr 12
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1074A>G
  hgvsp: ENST00000333837.4:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.1005A>G
  hgvsp: ENST00000429094.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.1002A>G
  hgvsp: ENST00000551601.1:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.1002A>G
  hgvsp: ENST00000395487.2:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.1002A>G
  hgvsp: ENST00000549027.1:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1155A>G
  hgvsp: ENST00000437801.2:c.1155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1451A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.236A>G
  hgvsp: ENST00000550313.1:c.236A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.1005A>G
  hgvsp: ENST00000452445.2:c.1005A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln385Gln
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/12-45108523-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108523
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108523
    reference: chr 12
allele count: 5
allele frequency: 4.266939750810719e-5
allele num: 117180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.993G>T
  hgvsp: ENST00000551601.1:c.993G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.227G>T
  hgvsp: ENST00000550313.1:c.227G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.993G>T
  hgvsp: ENST00000549027.1:c.993G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.996G>T
  hgvsp: ENST00000429094.2:c.996G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1146G>T
  hgvsp: ENST00000437801.2:c.1146G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1442G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.993G>T
  hgvsp: ENST00000395487.2:c.993G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1065G>T
  hgvsp: ENST00000333837.4:c.1065G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.996G>T
  hgvsp: ENST00000452445.2:c.996G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22761
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43199
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1146G>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

12-45108523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108523
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108523
    reference: chr 12
allele count: 1
allele frequency: 8.533879501621437e-6
allele num: 117180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.993G>A
  hgvsp: ENST00000551601.1:c.993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.993G>A
  hgvsp: ENST00000549027.1:c.993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1442G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.227G>A
  hgvsp: ENST00000550313.1:c.227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.996G>A
  hgvsp: ENST00000452445.2:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1065G>A
  hgvsp: ENST00000333837.4:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.996G>A
  hgvsp: ENST00000429094.2:c.996G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.993G>A
  hgvsp: ENST00000395487.2:c.993G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1146G>A
  hgvsp: ENST00000437801.2:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1146G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-45108524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108524
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108524
    reference: chr 12
allele count: 2
allele frequency: 1.71556013038257e-5
allele num: 116580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992C>T
  hgvsp: ENSP00000449332.1:p.Ser331Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064C>T
  hgvsp: ENSP00000327988.4:p.Ser355Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992C>T
  hgvsp: ENSP00000378866.2:p.Ser331Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992C>T
  hgvsp: ENSP00000447927.1:p.Ser331Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995C>T
  hgvsp: ENSP00000394612.2:p.Ser332Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995C>T
  hgvsp: ENSP00000390680.2:p.Ser332Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145C>T
  hgvsp: ENSP00000416341.2:p.Ser382Leu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226C>T
  hgvsp: ENSP00000448407.1:p.Ser76Leu
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18615
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser382Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-45108529-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108529
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108529
    reference: chr 12
allele count: 2
allele frequency: 1.771353668473447e-5
allele num: 112908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995-5C>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064-5C>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17343
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1145-5C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

12-45108542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108542
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108542
    reference: chr 12
allele count: 66
allele frequency: 6.628902012775702e-4
allele num: 99564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992-18G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064-18G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12940
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

12-45108546-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108546
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108546
    reference: chr 12
allele count: 4
allele frequency: 4.313598619648442e-5
allele num: 92730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064-22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995-22A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20359
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22442
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-45108558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108558
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108558
    reference: chr 12
allele count: 1
allele frequency: 1.239280226044713e-5
allele num: 80692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995-34T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226-34T>C
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21081
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7170
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

12-45108563-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45108563
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45108564
    reference: chr 12
allele count: 1
allele frequency: 1.289623687807898e-5
allele num: 77542
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.995-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1441-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.226-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.992-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.992-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.995-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1064-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.992-40dupT
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1145-40dupT
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20129
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/12-45168442-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168442
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168442
    reference: chr 12
allele count: 1
allele frequency: 1.656177542232527e-5
allele num: 60380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*32G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+103G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+88G>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+88G>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

12-45168453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168453
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168453
    reference: chr 12
allele count: 31
allele frequency: 4.866409217920944e-4
allele num: 63702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+77G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+92G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25424
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15777
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-45168455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168455
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168455
    reference: chr 12
allele count: 1
allele frequency: 1.532520076012996e-5
allele num: 65252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+90T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+75T>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+75T>C
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24351
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

12-45168461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168461
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168461
    reference: chr 12
allele count: 1
allele frequency: 1.468558169589097e-5
allele num: 68094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*13C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+84C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+69C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+69C>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-45168463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168463
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168463
    reference: chr 12
allele count: 1
allele frequency: 1.429960533089287e-5
allele num: 69932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+82C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+67C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+67C>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

12-45168464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168464
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168464
    reference: chr 12
allele count: 17
allele frequency: 2.404458148284348e-4
allele num: 70702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.*10A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+81A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+66A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+66A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12482
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23565
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15786
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

12-45168474-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168474
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168474
    reference: chr 12
allele count: 1
allele frequency: 1.22393028493097e-5
allele num: 81704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+71A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.369A>G
  hgvsp: ENST00000550462.1:c.369A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+56A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+56A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ter123Ter
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

12-45168480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168480
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168480
    reference: chr 12
allele count: 1
allele frequency: 1.105045638384865e-5
allele num: 90494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.363G>A
  hgvsp: ENST00000550462.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+50G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+65G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

12-45168483-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168483
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168483
    reference: chr 12
allele count: 1
allele frequency: 1.053740779768177e-5
allele num: 94900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.360A>T
  hgvsp: ENST00000550462.1:c.360A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+47A>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+62A>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala120Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

12-45168484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168484
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168484
    reference: chr 12
allele count: 12
allele frequency: 1.242364634020085e-4
allele num: 96590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.359C>T
  hgvsp: ENSP00000450102.1:p.Ala120Val
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+46C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+61C>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33935
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala120Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

12-45168488-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168488
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168488
    reference: chr 12
allele count: 1
allele frequency: 9.753813741172799e-6
allele num: 102524
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.355A>G
  hgvsp: ENSP00000450102.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+57A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+42A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+42A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys119Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

12-45168496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168496
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168496
    reference: chr 12
allele count: 6
allele frequency: 5.377500537750054e-5
allele num: 111576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.347G>A
  hgvsp: ENSP00000450102.1:p.Trp116Ter
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+34G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+49G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+34G>A
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46712
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp116Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

12-45168500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168500
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168500
    reference: chr 12
allele count: 1
allele frequency: 8.678898127093784e-6
allele num: 115222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.343C>T
  hgvsp: ENSP00000450102.1:p.Leu115Phe
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+30C>T
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+45C>T
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu115Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-45168515-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168515
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168515
    reference: chr 12
allele count: 1
allele frequency: 8.319882856049386e-6
allele num: 120194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+30T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.328T>G
  hgvsp: ENSP00000450102.1:p.Tyr110Asp
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+15T>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+15T>G
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr110Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

12-45168519-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168519
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168519
    reference: chr 12
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+26C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.324C>A
  hgvsp: ENSP00000450102.1:p.Asn108Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+11C>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+11C>A
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn108Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS

12-45168521-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168521
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168521
    reference: chr 12
allele count: 2
allele frequency: 1.655546909921693e-5
allele num: 120806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.322A>C
  hgvsp: ENSP00000450102.1:p.Asn108His
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+9A>C
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+24A>C
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn108His
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-45168523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168523
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168523
    reference: chr 12
allele count: 2
allele frequency: 1.654177625593436e-5
allele num: 120906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+22A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.991+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1440+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.991+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.994+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000450102
  ensembl transcript: ENST00000550462
  gene symbol: NELL2
  hgvsc: ENST00000550462.1:c.320A>G
  hgvsp: ENSP00000450102.1:p.His107Arg
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1144+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1063+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.991+7A>G
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.994+7A>G
  variant of: http://identifiers.org/hgnc/7751
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His107Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

12-45168539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45168539
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 45168539
    reference: chr 12
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000416341
  ensembl transcript: ENST00000437801
  gene symbol: NELL2
  hgvsc: ENST00000437801.2:c.1135G>A
  hgvsp: ENSP00000416341.2:p.Glu379Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000449332
  ensembl transcript: ENST00000551601
  gene symbol: NELL2
  hgvsc: ENST00000551601.1:c.982G>A
  hgvsp: ENSP00000449332.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000378866
  ensembl transcript: ENST00000395487
  gene symbol: NELL2
  hgvsc: ENST00000395487.2:c.982G>A
  hgvsp: ENSP00000378866.2:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000394612
  ensembl transcript: ENST00000452445
  gene symbol: NELL2
  hgvsc: ENST00000452445.2:c.985G>A
  hgvsp: ENSP00000394612.2:p.Glu329Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000390680
  ensembl transcript: ENST00000429094
  gene symbol: NELL2
  hgvsc: ENST00000429094.2:c.985G>A
  hgvsp: ENSP00000390680.2:p.Glu329Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184613
  ensembl transcript: ENST00000547751
  gene symbol: NELL2
  hgvsc: ENST00000547751.1:n.1431G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000448407
  ensembl transcript: ENST00000550313
  gene symbol: NELL2
  hgvsc: ENST00000550313.1:c.225+6G>A
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000447927
  ensembl transcript: ENST00000549027
  gene symbol: NELL2
  hgvsc: ENST00000549027.1:c.982G>A
  hgvsp: ENSP00000447927.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/7751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184613
  ensembl protein: ENSP00000327988
  ensembl transcript: ENST00000333837
  gene symbol: NELL2
  hgvsc: ENST00000333837.4:c.1054G>A
  hgvsp: ENSP00000327988.4:p.Glu352Lys
  variant of: http://identifiers.org/hgnc/7751
canonical: true
consequence: missense
filter: PASS
hgvs: p.Glu379Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.904e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.091e0

QD
type: SiteQuality
SIO_000300: 1.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.644987e6

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.937233630375823e-4
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.064e0

DP
type: SiteQuality
SIO_000300: 1.637278e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4346
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6510
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.914885347842985e-4
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3139e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.036e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.618407e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4348
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.657906022177296e-5
allele num: 65292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.590199e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.192e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.641e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
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variant carriers: 1

GenotypeQuality
all individuals: 1308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19348445435402e-5
allele num: 16146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.69e0

VQSLOD
type: SiteQuality
SIO_000300: -1.898e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.562579e6

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

GenotypeQuality
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544830995489093e-5
allele num: 64732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.52222e6

QD
type: SiteQuality
SIO_000300: 1.163e1

GenotypeQuality
all individuals: 326
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4891
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.219809709685289e-4
allele num: 8198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.711e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.453e0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.52175e6

GenotypeQuality
all individuals: 4342
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5058
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27684
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.450379808870375e-4
allele num: 8162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.507536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4881
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558943659776136e-5
allele num: 64146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 1.463164e6

QD
type: SiteQuality
SIO_000300: 1.114e1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.353e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

GenotypeQuality
all individuals: 420
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.5e0
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GenotypeQuality
all individuals: 5177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.75e1
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GenotypeQuality
all individuals: 1276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.316e0

QD
type: SiteQuality
SIO_000300: 2.688e1

DP
type: SiteQuality
SIO_000300: 1.419896e6

VQSLOD
type: SiteQuality
SIO_000300: -2.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4645
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variant carriers: 0

GenotypeQuality
all individuals: 5366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3057
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
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variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 4602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.017087062652563e-3
allele num: 9832
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.897e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 6.028e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

DP
type: SiteQuality
SIO_000300: 1.437515e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

GenotypeQuality
all individuals: 2167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.5e0
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GenotypeQuality
all individuals: 2412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
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variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.43833e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596424010217114e-5
allele num: 62640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15928
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.222e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 1.026e1

MQ
type: SiteQuality
SIO_000300: 6.051e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

DP
type: SiteQuality
SIO_000300: 1.444929e6

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.2625250501002e-5
allele num: 15968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.062e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 1.472326e6

MQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 2048
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.257039169065198e-5
allele num: 15982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62944
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.229e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.486067e6

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 32

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2241
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1977
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 416
bin: 5.25e1
variant carriers: 17

GenotypeQuality
all individuals: 744
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 7863
bin: 9.75e1
variant carriers: 6487

GenotypeQuality
all individuals: 5063
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 33

South Asian
type: Population
allele count: 418
allele frequency: 2.605335327848417e-2
allele num: 16044
num of homozygotes: 8

East Asian
type: Population
allele count: 6
allele frequency: 7.293946024799417e-4
allele num: 8226
num of homozygotes: 0

Latino
type: Population
allele count: 436
allele frequency: 3.952139231327049e-2
allele num: 11032
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 402
allele frequency: 6.255835667600373e-2
allele num: 6426
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 5531
allele frequency: 8.716001134608718e-2
allele num: 63458
num of homozygotes: 254

Other
type: Population
allele count: 47
allele frequency: 5.304740406320542e-2
allele num: 886
num of homozygotes: 2

African
type: Population
allele count: 130
allele frequency: 1.310219713767386e-2
allele num: 9922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.699e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.584552e6

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

GenotypeQuality
all individuals: 755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 9.064539521392314e-5
allele num: 11032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.699e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.584552e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63772
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.806684733514002e-4
allele num: 11070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.646e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 1.198e1

DP
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.212723658051689e-5
allele num: 16096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 2.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.585872e6

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

FS
type: SiteQuality
SIO_000300: 2.792e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.772e0

DP
type: SiteQuality
SIO_000300: 1.629053e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156877231867996e-5
allele num: 16242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.066e0

DP
type: SiteQuality
SIO_000300: 1.632221e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.603203829865586e-5
allele num: 65172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

FS
type: SiteQuality
SIO_000300: 2.058e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.635467e6

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
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African
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allele frequency: 9.778994719342852e-5
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11186
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
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SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.528537800739812e-5
allele num: 65422
num of homozygotes: 0

African
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allele frequency: 9.778994719342852e-5
allele num: 10226
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Other
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South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 5.363847666726265e-4
allele num: 11186
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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DP
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65766
num of homozygotes: 0

Other
type: Population
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allele num: 896
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African
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allele count: 1
allele frequency: 9.731413001167769e-5
allele num: 10276
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 4.37e0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 4.573e0

QD
type: SiteQuality
SIO_000300: 1.055e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.652327e6

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.573e0

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 1.652327e6

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.874e1

VQSLOD
type: SiteQuality
SIO_000300: -9.282e-1

DP
type: SiteQuality
SIO_000300: 1.653549e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 2.578e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66140
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.660455e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.662537e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

FS
type: SiteQuality
SIO_000300: 6.509e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.752e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.863676653075696e-5
allele num: 11282
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

African
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South Asian
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allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Other
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.274e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016409266409266e-5
allele num: 66304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

DP
type: SiteQuality
SIO_000300: 1.664697e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 1.267e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.508113651444773e-4
allele num: 66308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.96e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.664878e6

QD
type: SiteQuality
SIO_000300: 1.789e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 95
allele frequency: 9.171654759606102e-3
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4004
allele frequency: 6.038304931382898e-2
allele num: 66310
num of homozygotes: 143

Latino
type: Population
allele count: 337
allele frequency: 2.981773137497788e-2
allele num: 11302
num of homozygotes: 8

Other
type: Population
allele count: 36
allele frequency: 4.0e-2
allele num: 900
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 157
allele frequency: 9.539433710049824e-3
allele num: 16458
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 236
allele frequency: 3.606356968215159e-2
allele num: 6544
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.441e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

FS
type: SiteQuality
SIO_000300: 5.39e-1

DP
type: SiteQuality
SIO_000300: 1.858359e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: -9.798e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.613567e6

FS
type: SiteQuality
SIO_000300: 2.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

FS
type: SiteQuality
SIO_000300: 4.542e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

DP
type: SiteQuality
SIO_000300: 1.613015e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -4.76e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 9.98e0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.483511379470506e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.09e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.612976e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509980974239725e-5
allele num: 66226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.782e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.412e1

VQSLOD
type: SiteQuality
SIO_000300: -8.961e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.008e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1537
bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.867364322219518e-4
allele num: 16436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

QD
type: SiteQuality
SIO_000300: 1.222e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

FS
type: SiteQuality
SIO_000300: 4.307e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 1.608225e6

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.687e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
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SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.606125e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 1.784e0

VQSLOD
type: SiteQuality
SIO_000300: -4.722e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.896797153024912e-5
allele num: 11240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

DP
type: SiteQuality
SIO_000300: 1.595653e6

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.57e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64234
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.111387678904792e-4
allele num: 16070
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.543451e6

FS
type: SiteQuality
SIO_000300: 5.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.511e1

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1523
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.033423667570009e-5
allele num: 11070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.511e1

FS
type: SiteQuality
SIO_000300: 5.7e0

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 1.543451e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565925461948011e-5
allele num: 63860
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16006
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East Asian
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allele count: 1
allele frequency: 1.198178768272226e-4
allele num: 8346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.529916e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

VQSLOD
type: SiteQuality
SIO_000300: -6.706e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.052123948286476e-4
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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Latino
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.414e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.451248e6

FS
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.912e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 4.053506282934738e-4
allele num: 9868
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.548158011540169e-5
allele num: 54072
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 59
allele frequency: 7.042253521126761e-3
allele num: 8378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.137e0

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 1.299038711353598e-4
allele num: 7698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.987545904518601e-5
allele num: 50104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

QD
type: SiteQuality
SIO_000300: 1.597e1

DP
type: SiteQuality
SIO_000300: 1.054233e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.31932461267279e-5
allele num: 43116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.835e0

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.66814e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.494768310911809e-4
allele num: 6690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.38079e5

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

MQ
type: SiteQuality
SIO_000300: 6.072e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.141690229343387e-5
allele num: 31830
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

QD
type: SiteQuality
SIO_000300: 1.458e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 7.32906e5

GenotypeQuality
all individuals: 1027
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.761904761904762e-3
allele num: 10500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33666
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.392344497607656e-4
allele num: 4180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.241147467503362e-4
allele num: 4462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 7.93208e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.293577981651376e-4
allele num: 4360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4480
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

DP
type: SiteQuality
SIO_000300: 8.10233e5

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.127e0

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.777314891962451e-5
allele num: 36006
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 574
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4800
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 6346
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.479e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 8.63376e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4696
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.697890249824637e-5
allele num: 37066
num of homozygotes: 0

Latino
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allele num: 4936
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InbreedingCoeff
type: SiteQuality
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FS
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ReadPosRankSum
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MQ
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DP
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.984126984126984e-4
allele num: 5040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.733731598037124e-4
allele num: 37496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.712328767123288e-3
allele num: 584
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VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

FS
type: SiteQuality
SIO_000300: 2.081e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.93309e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

GenotypeQuality
all individuals: 480
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19460
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 521
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.288329519450801e-5
allele num: 43700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 8.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 1.018801e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.053219448094612e-5
allele num: 48704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.549e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 3.145e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

DP
type: SiteQuality
SIO_000300: 1.117616e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.373626373626374e-3
allele num: 728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.536e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 1.159486e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.9121190102872e-4
allele num: 52298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.382253063635022e-5
allele num: 13546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.728907330567082e-4
allele num: 5784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.179124e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.487e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.391982182628062e-4
allele num: 7184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14100
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 1.034e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

DP
type: SiteQuality
SIO_000300: 1.238333e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.07227998985544e-4
allele num: 7886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.059308072487644e-4
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.704e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.291e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579279848389135e-5
allele num: 63320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.369947e6

QD
type: SiteQuality
SIO_000300: 1.301e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.105e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 554
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511670093118878e-5
allele num: 66152
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 2.133e0

DP
type: SiteQuality
SIO_000300: 1.421883e6

VQSLOD
type: SiteQuality
SIO_000300: -5.012e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

QD
type: SiteQuality
SIO_000300: 6.01e0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.765e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.426788e6

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.368e0

QD
type: SiteQuality
SIO_000300: 1.077e1

FS
type: SiteQuality
SIO_000300: 1.495e0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
SIO_000300: 1.428502e6

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

FS
type: SiteQuality
SIO_000300: 1.434e0

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.462e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

QD
type: SiteQuality
SIO_000300: 1.336e1

FS
type: SiteQuality
SIO_000300: 1.625e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

DP
type: SiteQuality
SIO_000300: 1.42974e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0