9-91996027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996027
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996027
    reference: chr 9
allele count: 6
allele frequency: 4.953028777097195e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5255C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.76C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5255C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-14C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-91996031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996031
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996031
    reference: chr 9
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5251G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.72G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5251G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-18G>C
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

9-91996031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996031
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996031
    reference: chr 9
allele count: 5
allele frequency: 4.127251415647236e-5
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5251G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5251G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.72G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-18G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-18G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

9-91996032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996032
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996032
    reference: chr 9
allele count: 16
allele frequency: 1.320851288655539e-4
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5250C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.71C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5250C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-19C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

9-91996034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996034
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996034
    reference: chr 9
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5248C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5248C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.69C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-21C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-21C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

9-91996036-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996036
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996036
    reference: chr 9
allele count: 4
allele frequency: 3.302019184731463e-5
allele num: 121138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5246A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.67A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-23A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5246A>G
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

9-91996040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996040
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996040
    reference: chr 9
allele count: 2
allele frequency: 1.651554938975045e-5
allele num: 121098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.557-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.671-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.63G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5242G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1620-27G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5242G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

9-91996050-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996050
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996048
    reference: chr 9
allele count: 2
allele frequency: 1.652755970580944e-5
allele num: 121010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+37_670+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5230_1446+5231delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5230_1446+5231delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+37_556+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.51_52delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+37_1619+38delAT
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: CAT
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-91996052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996052
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996052
    reference: chr 9
allele count: 6
allele frequency: 4.958513768139896e-5
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5230A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.51A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+37A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5230A>G
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31349
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-91996058-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996058
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996059
    reference: chr 9
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5223dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.44dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5223dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+30dupG
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

9-91996059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996059
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996059
    reference: chr 9
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5223G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5223G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.44G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+30G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+30G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

9-91996061-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996061
    reference: chr 9
allele count: 3
allele frequency: 2.481102271035612e-5
allele num: 120914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.42A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5221A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5221A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+28A>C
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/9-91996062-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996062
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996062
    reference: chr 9
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5220G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.41G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+27G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5220G>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

9-91996069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996069
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996069
    reference: chr 9
allele count: 2
allele frequency: 1.655738790648387e-5
allele num: 120792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5213G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.34G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5213G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+20G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-91996072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996072
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996072
    reference: chr 9
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5210G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5210G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.31G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+17G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

9-91996073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996073
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996073
    reference: chr 9
allele count: 10
allele frequency: 8.282808203293245e-5
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5209C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.30C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5209C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+16C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-91996077-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996077
    reference: chr 9
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.26G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5205G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+12G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5205G>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+12G>T
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-91996077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996077
    reference: chr 9
allele count: 4
allele frequency: 3.315430011272462e-5
allele num: 120648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.26G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5205G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5205G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+12G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

9-91996079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996079
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996079
    reference: chr 9
allele count: 78
allele frequency: 6.469592913307455e-4
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.24G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5203G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.670+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5203G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.556+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1619+10G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31223
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

9-91996095-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996095
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996095
    reference: chr 9
allele count: 1
allele frequency: 8.338753523123364e-6
allele num: 119922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1613C>G
  hgvsp: ENSP00000348822.2:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.550C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1613C>G
  hgvsp: ENSP00000411981.2:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1613C>G
  hgvsp: ENSP00000391733.1:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1613C>G
  hgvsp: ENSP00000344923.4:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1613C>G
  hgvsp: ENSP00000405102.2:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.664C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5187C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5187C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1613C>G
  hgvsp: ENSP00000416523.1:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1613C>G
  hgvsp: ENSP00000343418.4:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.8C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1613C>G
  hgvsp: ENSP00000388768.2:p.Pro538Arg
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro538Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

9-91996096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996096
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996096
    reference: chr 9
allele count: 15
allele frequency: 1.251251251251251e-4
allele num: 119880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.549C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1612C>T
  hgvsp: ENSP00000416523.1:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.663C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1612C>T
  hgvsp: ENSP00000343418.4:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5186C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1612C>T
  hgvsp: ENSP00000405102.2:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1612C>T
  hgvsp: ENSP00000391733.1:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1612C>T
  hgvsp: ENSP00000388768.2:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.7C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1612C>T
  hgvsp: ENSP00000348822.2:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5186C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1612C>T
  hgvsp: ENSP00000344923.4:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1612C>T
  hgvsp: ENSP00000411981.2:p.Pro538Ser
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro538Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

9-91996102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996102
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996102
    reference: chr 9
allele count: 5
allele frequency: 4.187253998827569e-5
allele num: 119410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.657G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1606G>A
  hgvsp: ENSP00000344923.4:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1606G>A
  hgvsp: ENSP00000405102.2:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1606G>A
  hgvsp: ENSP00000416523.1:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1606G>A
  hgvsp: ENSP00000343418.4:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000540183
  gene symbol: SEMA4D
  hgvsc: ENST00000540183.1:n.1G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.543G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1606G>A
  hgvsp: ENSP00000411981.2:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1606G>A
  hgvsp: ENSP00000391733.1:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5180G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1606G>A
  hgvsp: ENSP00000388768.2:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5180G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1606G>A
  hgvsp: ENSP00000348822.2:p.Glu536Lys
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu536Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-91996103-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996103
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996103
    reference: chr 9
allele count: 23
allele frequency: 1.926846840808941e-4
allele num: 119366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1605C>T
  hgvsp: ENST00000343780.4:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1605C>T
  hgvsp: ENST00000455551.2:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1605C>T
  hgvsp: ENST00000450295.1:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1605C>T
  hgvsp: ENST00000339861.4:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.656C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1605C>T
  hgvsp: ENST00000356444.2:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1605C>T
  hgvsp: ENST00000420987.1:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5179C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1605C>T
  hgvsp: ENST00000422704.2:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.542C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5179C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1605C>T
  hgvsp: ENST00000438547.2:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30695
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr535Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

9-91996105-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996105
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996105
    reference: chr 9
allele count: 1
allele frequency: 8.382370198997468e-6
allele num: 119298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1603A>T
  hgvsp: ENSP00000388768.2:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1603A>T
  hgvsp: ENSP00000416523.1:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1603A>T
  hgvsp: ENSP00000348822.2:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5177A>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5177A>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.654A>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1603A>T
  hgvsp: ENSP00000405102.2:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1603A>T
  hgvsp: ENSP00000344923.4:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1603A>T
  hgvsp: ENSP00000343418.4:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1603A>T
  hgvsp: ENSP00000391733.1:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.540A>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1603A>T
  hgvsp: ENSP00000411981.2:p.Thr535Ser
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr535Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-91996107-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996107
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996107
    reference: chr 9
allele count: 1
allele frequency: 8.396164631996104e-6
allele num: 119102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1601A>C
  hgvsp: ENSP00000343418.4:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1601A>C
  hgvsp: ENSP00000388768.2:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.538A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1601A>C
  hgvsp: ENSP00000411981.2:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1601A>C
  hgvsp: ENSP00000405102.2:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1601A>C
  hgvsp: ENSP00000416523.1:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1601A>C
  hgvsp: ENSP00000348822.2:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.652A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5175A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1601A>C
  hgvsp: ENSP00000391733.1:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5175A>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1601A>C
  hgvsp: ENSP00000344923.4:p.Gln534Pro
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln534Pro
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

9-91996109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996109
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996109
    reference: chr 9
allele count: 1
allele frequency: 8.415949908266146e-6
allele num: 118822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1599C>T
  hgvsp: ENST00000422704.2:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.650C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5173C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1599C>T
  hgvsp: ENST00000420987.1:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5173C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1599C>T
  hgvsp: ENST00000450295.1:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1599C>T
  hgvsp: ENST00000455551.2:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1599C>T
  hgvsp: ENST00000339861.4:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1599C>T
  hgvsp: ENST00000356444.2:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1599C>T
  hgvsp: ENST00000438547.2:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1599C>T
  hgvsp: ENST00000343780.4:c.1599C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.536C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His533His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

9-91996111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996111
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996111
    reference: chr 9
allele count: 2
allele frequency: 1.69741822687692e-5
allele num: 117826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1597C>T
  hgvsp: ENSP00000391733.1:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1597C>T
  hgvsp: ENSP00000344923.4:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5171C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1597C>T
  hgvsp: ENSP00000388768.2:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.534C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1597C>T
  hgvsp: ENSP00000411981.2:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.648C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1597C>T
  hgvsp: ENSP00000416523.1:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1597C>T
  hgvsp: ENSP00000405102.2:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1597C>T
  hgvsp: ENSP00000343418.4:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1597C>T
  hgvsp: ENSP00000348822.2:p.His533Tyr
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5171C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29890
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His533Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

9-91996114-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996114
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996114
    reference: chr 9
allele count: 121
allele frequency: 1.027060061793366e-3
allele num: 117812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.531C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1594C>G
  hgvsp: ENSP00000388768.2:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.645C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1594C>G
  hgvsp: ENSP00000411981.2:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1594C>G
  hgvsp: ENSP00000343418.4:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5168C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1594C>G
  hgvsp: ENSP00000344923.4:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5168C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1594C>G
  hgvsp: ENSP00000416523.1:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1594C>G
  hgvsp: ENSP00000405102.2:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1594C>G
  hgvsp: ENSP00000348822.2:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1594C>G
  hgvsp: ENSP00000391733.1:p.Leu532Val
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 29918
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14008
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
hgvs: p.Leu532Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-91996115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996115
    reference: chr 9
allele count: 1
allele frequency: 8.488676106074497e-6
allele num: 117804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1593T>C
  hgvsp: ENST00000343780.4:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5167T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1593T>C
  hgvsp: ENST00000356444.2:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1593T>C
  hgvsp: ENST00000455551.2:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1593T>C
  hgvsp: ENST00000450295.1:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.644T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1593T>C
  hgvsp: ENST00000420987.1:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5167T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1593T>C
  hgvsp: ENST00000339861.4:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.530T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1593T>C
  hgvsp: ENST00000422704.2:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1593T>C
  hgvsp: ENST00000438547.2:c.1593T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala531Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-91996115-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996115
    reference: chr 9
allele count: 1
allele frequency: 8.488676106074497e-6
allele num: 117804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1593T>A
  hgvsp: ENST00000455551.2:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5167T>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1593T>A
  hgvsp: ENST00000450295.1:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1593T>A
  hgvsp: ENST00000356444.2:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5167T>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.644T>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1593T>A
  hgvsp: ENST00000422704.2:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1593T>A
  hgvsp: ENST00000339861.4:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.530T>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1593T>A
  hgvsp: ENST00000438547.2:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1593T>A
  hgvsp: ENST00000343780.4:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1593T>A
  hgvsp: ENST00000420987.1:c.1593T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala531Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-91996120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996120
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996120
    reference: chr 9
allele count: 99
allele frequency: 8.518913709427598e-4
allele num: 116212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5162G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1588G>A
  hgvsp: ENSP00000348822.2:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1588G>A
  hgvsp: ENSP00000391733.1:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1588G>A
  hgvsp: ENSP00000344923.4:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1588G>A
  hgvsp: ENSP00000343418.4:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1588G>A
  hgvsp: ENSP00000405102.2:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.639G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.525G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1588G>A
  hgvsp: ENSP00000411981.2:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5162G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1588G>A
  hgvsp: ENSP00000416523.1:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1588G>A
  hgvsp: ENSP00000388768.2:p.Val530Met
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29197
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13688
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Val530Met
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

9-91996121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996121
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996121
    reference: chr 9
allele count: 2
allele frequency: 1.728130508415996e-5
allele num: 115732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1587C>T
  hgvsp: ENST00000420987.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1587C>T
  hgvsp: ENST00000356444.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1587C>T
  hgvsp: ENST00000422704.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1587C>T
  hgvsp: ENST00000343780.4:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1587C>T
  hgvsp: ENST00000339861.4:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.638C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1587C>T
  hgvsp: ENST00000455551.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1587C>T
  hgvsp: ENST00000450295.1:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1587C>T
  hgvsp: ENST00000438547.2:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5161C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5161C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.524C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys529Cys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

9-91996124-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996124
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996124
    reference: chr 9
allele count: 1
allele frequency: 8.749212570868623e-6
allele num: 114296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1584C>G
  hgvsp: ENST00000343780.4:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1584C>G
  hgvsp: ENST00000450295.1:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.521C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.635C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1584C>G
  hgvsp: ENST00000455551.2:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5158C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1584C>G
  hgvsp: ENST00000438547.2:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1584C>G
  hgvsp: ENST00000356444.2:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1584C>G
  hgvsp: ENST00000420987.1:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1584C>G
  hgvsp: ENST00000339861.4:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1584C>G
  hgvsp: ENST00000422704.2:c.1584C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5158C>G
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr528Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-91996127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996127
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996127
    reference: chr 9
allele count: 283
allele frequency: 2.50234318354643e-3
allele num: 113094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5155G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1581G>A
  hgvsp: ENST00000422704.2:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1581G>A
  hgvsp: ENST00000420987.1:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1581G>A
  hgvsp: ENST00000356444.2:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1581G>A
  hgvsp: ENST00000339861.4:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1581G>A
  hgvsp: ENST00000438547.2:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.632G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5155G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1581G>A
  hgvsp: ENST00000450295.1:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1581G>A
  hgvsp: ENST00000455551.2:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1581G>A
  hgvsp: ENST00000343780.4:c.1581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.518G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
hgvs: p.Ala527Ala
num of homozygotes: 6
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

9-91996128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996128
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996128
    reference: chr 9
allele count: 4
allele frequency: 3.550064788682393e-5
allele num: 112674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.517C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.631C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5154C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1580C>T
  hgvsp: ENSP00000391733.1:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1580C>T
  hgvsp: ENSP00000405102.2:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1580C>T
  hgvsp: ENSP00000348822.2:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1580C>T
  hgvsp: ENSP00000416523.1:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1580C>T
  hgvsp: ENSP00000343418.4:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1580C>T
  hgvsp: ENSP00000388768.2:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1580C>T
  hgvsp: ENSP00000411981.2:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1580C>T
  hgvsp: ENSP00000344923.4:p.Ala527Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5154C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27100
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala527Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-91996130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996130
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996130
    reference: chr 9
allele count: 3
allele frequency: 2.669894272186821e-5
allele num: 112364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1578A>G
  hgvsp: ENST00000356444.2:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.515A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1578A>G
  hgvsp: ENST00000339861.4:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1578A>G
  hgvsp: ENST00000438547.2:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1578A>G
  hgvsp: ENST00000343780.4:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1578A>G
  hgvsp: ENST00000450295.1:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1578A>G
  hgvsp: ENST00000422704.2:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1578A>G
  hgvsp: ENST00000420987.1:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1578A>G
  hgvsp: ENST00000455551.2:c.1578A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5152A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.629A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5152A>G
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr526Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

9-91996131-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996131
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996131
    reference: chr 9
allele count: 1
allele frequency: 8.922357643783794e-6
allele num: 112078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5151C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1577C>G
  hgvsp: ENSP00000348822.2:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1577C>G
  hgvsp: ENSP00000388768.2:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1577C>G
  hgvsp: ENSP00000416523.1:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1577C>G
  hgvsp: ENSP00000411981.2:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1577C>G
  hgvsp: ENSP00000391733.1:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1577C>G
  hgvsp: ENSP00000343418.4:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1577C>G
  hgvsp: ENSP00000344923.4:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.628C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5151C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.514C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1577C>G
  hgvsp: ENSP00000405102.2:p.Thr526Arg
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr526Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

9-91996133-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996133
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996133
    reference: chr 9
allele count: 1
allele frequency: 8.981820794711504e-6
allele num: 111336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1575C>A
  hgvsp: ENST00000420987.1:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5149C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.626C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1575C>A
  hgvsp: ENST00000438547.2:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1575C>A
  hgvsp: ENST00000450295.1:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1575C>A
  hgvsp: ENST00000343780.4:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1575C>A
  hgvsp: ENST00000455551.2:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1575C>A
  hgvsp: ENST00000339861.4:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1575C>A
  hgvsp: ENST00000356444.2:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.512C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5149C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1575C>A
  hgvsp: ENST00000422704.2:c.1575C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro525Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-91996136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996136
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996136
    reference: chr 9
allele count: 3
allele frequency: 2.733983413833956e-5
allele num: 109730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1572G>A
  hgvsp: ENST00000420987.1:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.509G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1572G>A
  hgvsp: ENST00000438547.2:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1572G>A
  hgvsp: ENST00000422704.2:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5146G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1572G>A
  hgvsp: ENST00000339861.4:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1572G>A
  hgvsp: ENST00000455551.2:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5146G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1572G>A
  hgvsp: ENST00000343780.4:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1572G>A
  hgvsp: ENST00000450295.1:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.623G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1572G>A
  hgvsp: ENST00000356444.2:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13697
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro524Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

9-91996137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996137
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996137
    reference: chr 9
allele count: 5
allele frequency: 4.577413212245496e-5
allele num: 109232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1571C>T
  hgvsp: ENSP00000405102.2:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1571C>T
  hgvsp: ENSP00000348822.2:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1571C>T
  hgvsp: ENSP00000344923.4:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1571C>T
  hgvsp: ENSP00000391733.1:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1571C>T
  hgvsp: ENSP00000388768.2:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.508C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1571C>T
  hgvsp: ENSP00000416523.1:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5145C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.622C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1571C>T
  hgvsp: ENSP00000411981.2:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1571C>T
  hgvsp: ENSP00000343418.4:p.Pro524Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5145C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24714
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro524Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

9-91996145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996145
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996145
    reference: chr 9
allele count: 3
allele frequency: 2.904443799012489e-5
allele num: 103290
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1563C>T
  hgvsp: ENST00000450295.1:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1563C>T
  hgvsp: ENST00000343780.4:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1563C>T
  hgvsp: ENST00000356444.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1563C>T
  hgvsp: ENST00000438547.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1563C>T
  hgvsp: ENST00000455551.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5137C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.614C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5137C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1563C>T
  hgvsp: ENST00000420987.1:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1563C>T
  hgvsp: ENST00000339861.4:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.500C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1563C>T
  hgvsp: ENST00000422704.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20391
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala521Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

9-91996148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996148
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996148
    reference: chr 9
allele count: 3
allele frequency: 2.935995302407516e-5
allele num: 102180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1560C>T
  hgvsp: ENST00000356444.2:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5134C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1560C>T
  hgvsp: ENST00000455551.2:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1560C>T
  hgvsp: ENST00000438547.2:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.611C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1560C>T
  hgvsp: ENST00000339861.4:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1560C>T
  hgvsp: ENST00000422704.2:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.497C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1560C>T
  hgvsp: ENST00000450295.1:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5134C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1560C>T
  hgvsp: ENST00000420987.1:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1560C>T
  hgvsp: ENST00000343780.4:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13265
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys520Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-91996161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996161
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996161
    reference: chr 9
allele count: 1
allele frequency: 1.115722765207301e-5
allele num: 89628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1547G>A
  hgvsp: ENSP00000391733.1:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1547G>A
  hgvsp: ENSP00000343418.4:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1547G>A
  hgvsp: ENSP00000411981.2:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.598G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.484G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1547G>A
  hgvsp: ENSP00000405102.2:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1547G>A
  hgvsp: ENSP00000348822.2:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1547G>A
  hgvsp: ENSP00000416523.1:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5121G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1547G>A
  hgvsp: ENSP00000388768.2:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5121G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1547G>A
  hgvsp: ENSP00000344923.4:p.Arg516Gln
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11235
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg516Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-91996163-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996163
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996163
    reference: chr 9
allele count: 7
allele frequency: 7.945877224845623e-5
allele num: 88096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5119G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1545G>A
  hgvsp: ENST00000339861.4:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1545G>A
  hgvsp: ENST00000438547.2:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1545G>A
  hgvsp: ENST00000356444.2:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1545G>A
  hgvsp: ENST00000455551.2:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.482G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.596G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1545G>A
  hgvsp: ENST00000422704.2:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1545G>A
  hgvsp: ENST00000450295.1:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1545G>A
  hgvsp: ENST00000343780.4:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1545G>A
  hgvsp: ENST00000420987.1:c.1545G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5119G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13678
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15068
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala515Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-91996164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996164
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996164
    reference: chr 9
allele count: 31
allele frequency: 3.531153889964689e-4
allele num: 87790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1544C>T
  hgvsp: ENSP00000344923.4:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1544C>T
  hgvsp: ENSP00000348822.2:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1544C>T
  hgvsp: ENSP00000416523.1:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5118C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1544C>T
  hgvsp: ENSP00000343418.4:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1544C>T
  hgvsp: ENSP00000405102.2:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.595C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1544C>T
  hgvsp: ENSP00000411981.2:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1544C>T
  hgvsp: ENSP00000388768.2:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5118C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1544C>T
  hgvsp: ENSP00000391733.1:p.Ala515Val
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.481C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11614
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala515Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

9-91996175-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996175
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996175
    reference: chr 9
allele count: 1
allele frequency: 1.359915141295183e-5
allele num: 73534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5107C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1533C>G
  hgvsp: ENSP00000388768.2:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1533C>G
  hgvsp: ENSP00000405102.2:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1533C>G
  hgvsp: ENSP00000344923.4:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1533C>G
  hgvsp: ENSP00000348822.2:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5107C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1533C>G
  hgvsp: ENSP00000411981.2:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1533C>G
  hgvsp: ENSP00000343418.4:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1533C>G
  hgvsp: ENSP00000416523.1:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.584C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.470C>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1533C>G
  hgvsp: ENSP00000391733.1:p.Asp511Glu
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp511Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-91996181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996181
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996181
    reference: chr 9
allele count: 3
allele frequency: 4.380073585236232e-5
allele num: 68492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1527C>T
  hgvsp: ENST00000420987.1:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1527C>T
  hgvsp: ENST00000455551.2:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1527C>T
  hgvsp: ENST00000450295.1:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1527C>T
  hgvsp: ENST00000422704.2:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.464C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1527C>T
  hgvsp: ENST00000438547.2:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1527C>T
  hgvsp: ENST00000356444.2:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1527C>T
  hgvsp: ENST00000339861.4:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1527C>T
  hgvsp: ENST00000343780.4:c.1527C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5101C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5101C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.578C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys509Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

9-91996183-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996183
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996183
    reference: chr 9
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1525T>C
  hgvsp: ENSP00000405102.2:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1525T>C
  hgvsp: ENSP00000344923.4:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.576T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5099T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1525T>C
  hgvsp: ENSP00000416523.1:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.462T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1525T>C
  hgvsp: ENSP00000391733.1:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1525T>C
  hgvsp: ENSP00000411981.2:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1525T>C
  hgvsp: ENSP00000348822.2:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1525T>C
  hgvsp: ENSP00000343418.4:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1525T>C
  hgvsp: ENSP00000388768.2:p.Cys509Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5099T>C
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys509Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-91996184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996184
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996184
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 65746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1524C>T
  hgvsp: ENST00000438547.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1524C>T
  hgvsp: ENST00000450295.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5098C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.575C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1524C>T
  hgvsp: ENST00000422704.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1524C>T
  hgvsp: ENST00000420987.1:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1524C>T
  hgvsp: ENST00000343780.4:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1524C>T
  hgvsp: ENST00000356444.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1524C>T
  hgvsp: ENST00000455551.2:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1524C>T
  hgvsp: ENST00000339861.4:c.1524C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5098C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.461C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22998
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr508Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

9-91996188-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996188
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996188
    reference: chr 9
allele count: 1
allele frequency: 1.603540617683846e-5
allele num: 62362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1520G>A
  hgvsp: ENSP00000416523.1:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.457G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1520G>A
  hgvsp: ENSP00000391733.1:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1520G>A
  hgvsp: ENSP00000344923.4:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.571G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1520G>A
  hgvsp: ENSP00000348822.2:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1520G>A
  hgvsp: ENSP00000411981.2:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5094G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1520G>A
  hgvsp: ENSP00000343418.4:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5094G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1520G>A
  hgvsp: ENSP00000405102.2:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1520G>A
  hgvsp: ENSP00000388768.2:p.Gly507Asp
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly507Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

9-91996189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996189
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996189
    reference: chr 9
allele count: 1
allele frequency: 1.613423685059697e-5
allele num: 61980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.456G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1519G>A
  hgvsp: ENSP00000391733.1:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1519G>A
  hgvsp: ENSP00000405102.2:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1519G>A
  hgvsp: ENSP00000348822.2:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1519G>A
  hgvsp: ENSP00000411981.2:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.570G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1519G>A
  hgvsp: ENSP00000344923.4:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1519G>A
  hgvsp: ENSP00000343418.4:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5093G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1519G>A
  hgvsp: ENSP00000416523.1:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1519G>A
  hgvsp: ENSP00000388768.2:p.Gly507Ser
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5093G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly507Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-91996190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996190
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996190
    reference: chr 9
allele count: 2
allele frequency: 3.297717979158422e-5
allele num: 60648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1518C>T
  hgvsp: ENST00000450295.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1518C>T
  hgvsp: ENST00000356444.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.455C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5092C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1518C>T
  hgvsp: ENST00000455551.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1518C>T
  hgvsp: ENST00000420987.1:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1518C>T
  hgvsp: ENST00000438547.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1518C>T
  hgvsp: ENST00000339861.4:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5092C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1518C>T
  hgvsp: ENST00000343780.4:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1518C>T
  hgvsp: ENST00000422704.2:c.1518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.569C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His506His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

9-91996196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996196
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996196
    reference: chr 9
allele count: 178
allele frequency: 3.114392693424782e-3
allele num: 57154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.563G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1512G>A
  hgvsp: ENST00000420987.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5086G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1512G>A
  hgvsp: ENST00000422704.2:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.449G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1512G>A
  hgvsp: ENST00000339861.4:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1512G>A
  hgvsp: ENST00000455551.2:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1512G>A
  hgvsp: ENST00000450295.1:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5086G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1512G>A
  hgvsp: ENST00000343780.4:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1512G>A
  hgvsp: ENST00000356444.2:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1512G>A
  hgvsp: ENST00000438547.2:c.1512G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17563
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 25121
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Gly504Gly
num of homozygotes: 1
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

9-91996206-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996206
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996206
    reference: chr 9
allele count: 1
allele frequency: 2.257030650476234e-5
allele num: 44306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1502C>A
  hgvsp: ENSP00000391733.1:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1502C>A
  hgvsp: ENSP00000344923.4:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5076C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1502C>A
  hgvsp: ENSP00000416523.1:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.553C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1502C>A
  hgvsp: ENSP00000405102.2:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1502C>A
  hgvsp: ENSP00000411981.2:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1502C>A
  hgvsp: ENSP00000343418.4:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1502C>A
  hgvsp: ENSP00000348822.2:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.439C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5076C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1502C>A
  hgvsp: ENSP00000388768.2:p.Ala501Asp
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala501Asp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

9-91996211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996211
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996211
    reference: chr 9
allele count: 1
allele frequency: 2.470355731225296e-5
allele num: 40480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1497G>A
  hgvsp: ENST00000339861.4:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1497G>A
  hgvsp: ENST00000455551.2:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1497G>A
  hgvsp: ENST00000343780.4:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.548G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1497G>A
  hgvsp: ENST00000450295.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1497G>A
  hgvsp: ENST00000422704.2:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1497G>A
  hgvsp: ENST00000356444.2:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5071G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1497G>A
  hgvsp: ENST00000420987.1:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.434G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1497G>A
  hgvsp: ENST00000438547.2:c.1497G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5071G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro499Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

9-91996212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996212
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996212
    reference: chr 9
allele count: 4
allele frequency: 1.00060036021613e-4
allele num: 39976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1496C>T
  hgvsp: ENSP00000388768.2:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1496C>T
  hgvsp: ENSP00000344923.4:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1496C>T
  hgvsp: ENSP00000411981.2:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1496C>T
  hgvsp: ENSP00000348822.2:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1496C>T
  hgvsp: ENSP00000416523.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5070C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1496C>T
  hgvsp: ENSP00000391733.1:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1496C>T
  hgvsp: ENSP00000343418.4:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.547C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1496C>T
  hgvsp: ENSP00000405102.2:p.Pro499Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5070C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.433C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13710
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro499Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

9-91996218-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996218
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996218
    reference: chr 9
allele count: 1
allele frequency: 2.849814762040467e-5
allele num: 35090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1490A>G
  hgvsp: ENSP00000391733.1:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1490A>G
  hgvsp: ENSP00000405102.2:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1490A>G
  hgvsp: ENSP00000388768.2:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1490A>G
  hgvsp: ENSP00000344923.4:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.427A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5064A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1490A>G
  hgvsp: ENSP00000348822.2:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.541A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1490A>G
  hgvsp: ENSP00000416523.1:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1490A>G
  hgvsp: ENSP00000411981.2:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1490A>G
  hgvsp: ENSP00000343418.4:p.Gln497Arg
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5064A>G
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln497Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

9-91996230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996230
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996230
    reference: chr 9
allele count: 1
allele frequency: 4.241241835609467e-5
allele num: 23578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1478C>T
  hgvsp: ENSP00000388768.2:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1478C>T
  hgvsp: ENSP00000344923.4:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5052C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1478C>T
  hgvsp: ENSP00000348822.2:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1478C>T
  hgvsp: ENSP00000343418.4:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1478C>T
  hgvsp: ENSP00000405102.2:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1478C>T
  hgvsp: ENSP00000416523.1:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.415C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.529C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1478C>T
  hgvsp: ENSP00000391733.1:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1478C>T
  hgvsp: ENSP00000411981.2:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5052C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser493Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

9-91996245-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996245
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996245
    reference: chr 9
allele count: 1
allele frequency: 6.382435537401073e-5
allele num: 15668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1463A>G
  hgvsp: ENSP00000343418.4:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.400A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1463A>G
  hgvsp: ENSP00000411981.2:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1463A>G
  hgvsp: ENSP00000405102.2:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1463A>G
  hgvsp: ENSP00000344923.4:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.514A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1463A>G
  hgvsp: ENSP00000416523.1:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1463A>G
  hgvsp: ENSP00000391733.1:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1463A>G
  hgvsp: ENSP00000348822.2:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5037A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1463A>G
  hgvsp: ENSP00000388768.2:p.Tyr488Cys
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5037A>G
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr488Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-91996255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996255
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996255
    reference: chr 9
allele count: 1
allele frequency: 7.62660158633313e-5
allele num: 13112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1453A>G
  hgvsp: ENSP00000343418.4:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5027A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.390A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.504A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1453A>G
  hgvsp: ENSP00000344923.4:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1453A>G
  hgvsp: ENSP00000348822.2:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5027A>G
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1453A>G
  hgvsp: ENSP00000411981.2:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1453A>G
  hgvsp: ENSP00000405102.2:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1453A>G
  hgvsp: ENSP00000416523.1:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1453A>G
  hgvsp: ENSP00000388768.2:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1453A>G
  hgvsp: ENSP00000391733.1:p.Arg485Gly
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg485Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

9-91996265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996265
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996265
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 10812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.494G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5017G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.384-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1447-4G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5017G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38016
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1447-4G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-91996280-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996280
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 9486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.479C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.384-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+5002C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+5002C>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1447-19C>A
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-91996308-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91996308
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 91996308
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 8744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000486935
  gene symbol: SEMA4D
  hgvsc: ENST00000486935.2:n.451G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+4974G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.384-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+4974G>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1447-47G>C
  variant of: http://identifiers.org/hgnc/10732
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

9-92001235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92001235
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 92001235
    reference: chr 9
allele count: 1
allele frequency: 9.105146228648432e-6
allele num: 109828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.383+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1446+47C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

9-92001238-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92001238
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 92001238
    reference: chr 9
allele count: 1
allele frequency: 9.050592813829306e-6
allele num: 110490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.383+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1446+44T>C
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

9-92001240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92001240
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 92001240
    reference: chr 9
allele count: 5
allele frequency: 4.544876106677332e-5
allele num: 110014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.383+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1446+42G>A
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

9-92001241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 92001241
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 92001241
    reference: chr 9
allele count: 2
allele frequency: 1.806227873708547e-5
allele num: 110728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000391733
  ensembl transcript: ENST00000420987
  gene symbol: SEMA4D
  hgvsc: ENST00000420987.1:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000416523
  ensembl transcript: ENST00000450295
  gene symbol: SEMA4D
  hgvsc: ENST00000450295.1:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000388768
  ensembl transcript: ENST00000422704
  gene symbol: SEMA4D
  hgvsc: ENST00000422704.2:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000405102
  ensembl transcript: ENST00000438547
  gene symbol: SEMA4D
  hgvsc: ENST00000438547.2:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000344923
  ensembl transcript: ENST00000339861
  gene symbol: SEMA4D
  hgvsc: ENST00000339861.4:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000343418
  ensembl transcript: ENST00000343780
  gene symbol: SEMA4D
  hgvsc: ENST00000343780.4:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000348822
  ensembl transcript: ENST00000356444
  gene symbol: SEMA4D
  hgvsc: ENST00000356444.2:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000411981
  ensembl transcript: ENST00000455551
  gene symbol: SEMA4D
  hgvsc: ENST00000455551.2:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl transcript: ENST00000544513
  gene symbol: SEMA4D
  hgvsc: ENST00000544513.1:n.383+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000395222
  ensembl transcript: ENST00000429836
  gene symbol: SEMA4D
  hgvsc: ENST00000429836.1:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000187764
  ensembl protein: ENSP00000446394
  ensembl transcript: ENST00000537934
  gene symbol: SEMA4D
  hgvsc: ENST00000537934.1:c.1446+41C>T
  variant of: http://identifiers.org/hgnc/10732
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505857614899369e-5
allele num: 66580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.745e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.401e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

DP
type: SiteQuality
SIO_000300: 1.665356e6

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31387
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45726
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.12e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 1.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.665121e6

GenotypeDepth
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.029201502483945e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.12e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 1.192e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.665121e6

GenotypeDepth
all individuals: 14968
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1645
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.102670391397074e-4
allele num: 66582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.665577e6

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 0

GenotypeQuality
all individuals: 8327
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variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664277e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

FS
type: SiteQuality
SIO_000300: 4.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeDepth
all individuals: 89
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 1

GenotypeQuality
all individuals: 1784
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.008351608736143e-5
allele num: 66574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.664402e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

QD
type: SiteQuality
SIO_000300: 1.644e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
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variant carriers: 0

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeDepth
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 1785
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
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variant carriers: 2

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 8316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66550
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African
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allele frequency: 1.933861922258751e-4
allele num: 10342
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.663621e6

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

Other
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VQSLOD
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FS
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 4
allele frequency: 3.871467286101432e-4
allele num: 10332
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66430
num of homozygotes: 0

East Asian
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66418
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Latino
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South Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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Latino
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African
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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Other
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East Asian
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FS
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66280
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South Asian
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East Asian
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Other
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Latino
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European (Finnish)
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African
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FS
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MQ
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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African
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Other
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQ
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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Other
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East Asian
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Latino
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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African
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ReadPosRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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MQ
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743375174337517e-4
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.974723538704581e-4
allele num: 65832
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

ClippingRankSum
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SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.63513e6

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.14e-1

QD
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SIO_000300: 1.536e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.366049598323437e-4
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
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SIO_000300: 2.73e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 5.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

DP
type: SiteQuality
SIO_000300: 1.624705e6

QD
type: SiteQuality
SIO_000300: 1.42e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 19
allele frequency: 1.870815281606932e-3
allele num: 10156
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.842978252856616e-4
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.623652e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeDepth
all individuals: 141
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variant carriers: 0

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 7910
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GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 968
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GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.741258741258741e-5
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

DP
type: SiteQuality
SIO_000300: 1.620061e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.134e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 64
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 20
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GenotypeQuality
all individuals: 330
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 288
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1813
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GenotypeQuality
all individuals: 1656
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GenotypeQuality
all individuals: 43805
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQ
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SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

FS
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SIO_000300: 1.227e0

DP
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VQSLOD
type: SiteQuality
SIO_000300: -5.067e-1

QD
type: SiteQuality
SIO_000300: 1.757e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.626e0

MQ
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DP
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SIO_000300: 1.611406e6

FS
type: SiteQuality
SIO_000300: 2.403e0

ReadPosRankSum
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SIO_000300: 2.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeDepth
all individuals: 139
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GenotypeDepth
all individuals: 259
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2638
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GenotypeQuality
all individuals: 951
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 350
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GenotypeQuality
all individuals: 42377
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GenotypeQuality
all individuals: 605
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GenotypeQuality
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GenotypeQuality
all individuals: 1541
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GenotypeQuality
all individuals: 1730
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.790436005625879e-5
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.252344629235963e-5
allele num: 15994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.592352e6

FS
type: SiteQuality
SIO_000300: 3.599e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 2.211e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.442e0

GenotypeDepth
all individuals: 77
bin: 6.25e1
variant carriers: 9

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 448
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 42949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.75e1
variant carriers: 122

GenotypeQuality
all individuals: 7389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64690
num of homozygotes: 0

African
type: Population
allele count: 118
allele frequency: 1.179292424545273e-2
allele num: 10006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.637594513803411e-4
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 1.591343e6

QD
type: SiteQuality
SIO_000300: 1.634e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeDepth
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9815
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
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GenotypeQuality
all individuals: 120
bin: 4.25e1
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GenotypeQuality
all individuals: 7408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.431e1

DP
type: SiteQuality
SIO_000300: 1.588108e6

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

GenotypeDepth
all individuals: 22
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545738399233314e-5
allele num: 64694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.588108e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeDepth
all individuals: 69
bin: 6.25e1
variant carriers: 4

GenotypeDepth
all individuals: 22
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
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GenotypeQuality
all individuals: 1440
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variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 200
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variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 41657
bin: 6.25e1
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GenotypeQuality
all individuals: 932
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 63
allele frequency: 6.411561164258091e-3
allele num: 9826
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.39584703561026e-5
allele num: 63858
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.664298401420959e-3
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.55968e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.731e0

QD
type: SiteQuality
SIO_000300: 1.468e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 25
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
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variant carriers: 0

GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 612
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variant carriers: 0

GenotypeQuality
all individuals: 220
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1586
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
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GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 560
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variant carriers: 0

GenotypeQuality
all individuals: 41142
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variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
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GenotypeQuality
all individuals: 835
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.91583452211127e-5
allele num: 11216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572722697533971e-5
allele num: 63584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 3.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.672e0

QD
type: SiteQuality
SIO_000300: 1.517e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.547789e6

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeDepth
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
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GenotypeQuality
all individuals: 1499
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GenotypeQuality
all individuals: 452
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6506
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 829
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 5355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 778
bin: 2.75e1
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GenotypeQuality
all individuals: 229
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GenotypeQuality
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GenotypeQuality
all individuals: 612
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GenotypeQuality
all individuals: 541
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GenotypeQuality
all individuals: 835
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GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.208313194780087e-4
allele num: 8276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.214e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.051e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 1.51487e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

GenotypeDepth
all individuals: 93
bin: 5.75e1
variant carriers: 14

GenotypeDepth
all individuals: 1020
bin: 3.75e1
variant carriers: 42

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 38158
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 208
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variant carriers: 1

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 1293
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variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
all individuals: 505
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GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 4.25e1
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GenotypeQuality
all individuals: 1410
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 819
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GenotypeQuality
all individuals: 968
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GenotypeQuality
all individuals: 6396
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GenotypeQuality
all individuals: 1009
bin: 9.75e1
variant carriers: 274

GenotypeQuality
all individuals: 5992
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042970379641218e-4
allele num: 9588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 1.445968959866328e-3
allele num: 62242
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.77326968973747e-3
allele num: 838
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 3.64232380258605e-4
allele num: 10982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 184
allele frequency: 3.031301482701812e-2
allele num: 6070
num of homozygotes: 5

DP
type: SiteQuality
SIO_000300: 1.488884e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.425e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

GenotypeDepth
all individuals: 336
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.75e1
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GenotypeQuality
all individuals: 1284
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 936
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.651634106262553e-4
allele num: 10954
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.063000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.994e0

DP
type: SiteQuality
SIO_000300: 1.475771e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeDepth
all individuals: 49
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variant carriers: 0

GenotypeDepth
all individuals: 24
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variant carriers: 0

GenotypeDepth
all individuals: 79
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variant carriers: 1

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 472
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GenotypeQuality
all individuals: 830
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
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variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5886
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.850130953535746e-5
allele num: 61854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

DP
type: SiteQuality
SIO_000300: 1.46678e6

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 2.472e0

QD
type: SiteQuality
SIO_000300: 1.091e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37841
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620325361332556e-5
allele num: 61716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15088
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.872e0

QD
type: SiteQuality
SIO_000300: 2.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.461583e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeDepth
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
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variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 37021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 1.446603e6

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeDepth
all individuals: 834
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 59
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variant carriers: 0

GenotypeDepth
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 36202
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.377344336084021e-5
allele num: 10664
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651309488424321e-5
allele num: 60558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 1.2377e1

VQSLOD
type: SiteQuality
SIO_000300: -6.379e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

DP
type: SiteQuality
SIO_000300: 1.417977e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeDepth
all individuals: 102
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 36086
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.637241562406664e-5
allele num: 60266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.797172376291462e-5
allele num: 14712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.642e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
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SIO_000300: -8.599999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

FS
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 1.404918e6

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14469
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GenotypeQuality
all individuals: 4279
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 960
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GenotypeQuality
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GenotypeQuality
all individuals: 1035
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GenotypeQuality
all individuals: 704
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variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 7.142857142857143e-5
allele num: 14000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.49088878028346e-5
allele num: 57292
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

QD
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ReadPosRankSum
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DP
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SIO_000300: 1.290606e6

MQ
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.400952647800504e-4
allele num: 7138
num of homozygotes: 0

African
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allele frequency: 1.146000458400183e-4
allele num: 8726
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.76385508166649e-5
allele num: 56694
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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DP
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SIO_000300: 1.275059e6

FS
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InbreedingCoeff
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SIO_000300: -3.3e-3

VQSLOD
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MQ
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: 2.2e-1

ReadPosRankSum
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SIO_000300: 3.17e-1

ClippingRankSum
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SIO_000300: -5.649999999999999e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.990683600748497e-5
allele num: 50234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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SIO_000300: 1.081e6

ReadPosRankSum
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SIO_000300: 4.24e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49378
num of homozygotes: 0

Latino
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allele count: 7
allele frequency: 8.715139442231076e-4
allele num: 8032
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
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SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 1.096e0

ClippingRankSum
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MQ
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VQSLOD
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DP
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SIO_000300: 1.055082e6

QD
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SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
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SIO_000300: 2.53e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 25
allele frequency: 4.208754208754209e-3
allele num: 5940
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12094
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European (Non-Finnish)
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allele count: 6
allele frequency: 1.219066195294405e-4
allele num: 49218
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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Other
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ReadPosRankSum
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SIO_000300: 4.37e-1

DP
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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allele num: 6398
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Other
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MQ
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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allele num: 38316
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European (Finnish)
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Other
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South Asian
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East Asian
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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African
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Other
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European (Finnish)
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VQSLOD
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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Other
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East Asian
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MQ
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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East Asian
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South Asian
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VQSLOD
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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MQ
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ReadPosRankSum
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DP
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MQRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.262443438914027e-4
allele num: 4420
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.82e0

QD
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DP
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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SIO_000300: -2.87e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.325673884224481e-4
allele num: 22630
num of homozygotes: 0

South Asian
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allele num: 5886
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Other
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -3.663e0

QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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VQSLOD
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DP
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 7.25268349289237e-5
allele num: 13788
num of homozygotes: 0

South Asian
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ClippingRankSum
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SIO_000300: 2.17e-1

FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
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allele frequency: 3.561253561253561e-4
allele num: 2808
num of homozygotes: 0

European (Non-Finnish)
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allele num: 9208
num of homozygotes: 0

Other
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Latino
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South Asian
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East Asian
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BaseQRankSum
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SIO_000300: -4.1e-2

MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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MQRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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Latino
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African
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DP
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.69145e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.581e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.38e-2

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10832
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22933
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.29753e5

QD
type: SiteQuality
SIO_000300: 6.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.013e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5977
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3076
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043623460655395e-4
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12938
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.192523e6

VQSLOD
type: SiteQuality
SIO_000300: -4.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.975e1

GenotypeQuality
all individuals: 5222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5407
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619695497246518e-5
allele num: 61740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.83e0

VQSLOD
type: SiteQuality
SIO_000300: -3.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.945e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.223763e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

GenotypeQuality
all individuals: 2786
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4995
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.875511928752519e-5
allele num: 61532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.082465639316951e-4
allele num: 9604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.153e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.248247e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 3.825e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3