10-112660247-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660247
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660247
    reference: chr 10
allele count: 1
allele frequency: 7.015574575557738e-5
allele num: 14254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.150G>A
  hgvsp: ENST00000605742.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.75G>A
  hgvsp: ENST00000423273.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.307G>A
  hgvsp: ENSP00000433157.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.150G>A
  hgvsp: ENST00000448814.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.84G>A
  hgvsp: ENST00000436562.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.4457G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*109G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.84G>A
  hgvsp: ENST00000447005.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val103Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-112660260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660260
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660260
    reference: chr 10
allele count: 2
allele frequency: 1.413827230312456e-4
allele num: 14146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.62T>C
  hgvsp: ENSP00000432274.1:p.Met21Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.71T>C
  hgvsp: ENSP00000431936.1:p.Met24Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.137T>C
  hgvsp: ENSP00000436622.1:p.Met46Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.294T>C
  hgvsp: ENST00000454061.1:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.71T>C
  hgvsp: ENSP00000432849.1:p.Met24Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.4444T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.137T>C
  hgvsp: ENSP00000474675.1:p.Met46Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*96T>C
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met24Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

10-112660277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660277
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660277
    reference: chr 10
allele count: 1
allele frequency: 7.381163271331562e-5
allele num: 13548
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.277G>A
  hgvsp: ENSP00000433157.1:p.Val93Ile
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.120G>A
  hgvsp: ENST00000448814.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*79G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.45G>A
  hgvsp: ENST00000423273.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.54G>A
  hgvsp: ENST00000447005.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.54G>A
  hgvsp: ENST00000436562.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.4427G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.120G>A
  hgvsp: ENST00000605742.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val93Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

10-112660295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660295
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660295
    reference: chr 10
allele count: 4
allele frequency: 3.286230693394677e-4
allele num: 12172
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.270-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.113-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.4409G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.113-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.47-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.47-11G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*72-11G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

10-112660322-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660322
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660322
    reference: chr 10
allele count: 2
allele frequency: 1.910219675262655e-4
allele num: 10470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.113-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.47-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.4382T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.270-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*72-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.47-38T>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.113-38T>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

10-112660821-ATTGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660821
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660817
    reference: chr 10
allele count: 8
allele frequency: 1.276324186343331e-3
allele num: 6268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*30_*33delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.46+471_46+474delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3879_3882delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.46+471_46+474delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.112+471_112+474delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.112+471_112+474delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.269+471_269+474delACAA
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-541_38-538delACAA
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: ATTGT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

10-112660836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660836
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660836
    reference: chr 10
allele count: 1
allele frequency: 1.425313568985177e-4
allele num: 7016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.112+460G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-552G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.46+460G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.112+460G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3868G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.46+460G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.269+460G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS

10-112660875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112660875
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112660875
    reference: chr 10
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-591G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.46+421G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.269+421G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.112+421G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3829G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.118G>A
  hgvsp: ENSP00000435795.1:p.Gly40Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.46+421G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.112+421G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly40Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-112661268-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661268
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661268
    reference: chr 10
allele count: 2
allele frequency: 1.407063458561981e-4
allele num: 14214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.112+28T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3436T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-984T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.112+28T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.46+28T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.112+28T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.46+28T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.269+28T>C
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-112661296-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661296
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661296
    reference: chr 10
allele count: 1
allele frequency: 7.033338022225348e-5
allele num: 14218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.46G>C
  hgvsp: ENSP00000432849.1:p.Gly16Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1012G>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.112G>C
  hgvsp: ENSP00000436622.1:p.Gly38Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3408G>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.46G>C
  hgvsp: ENSP00000431936.1:p.Gly16Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.269G>C
  hgvsp: ENSP00000433157.1:p.Arg90Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.112G>C
  hgvsp: ENSP00000474675.1:p.Gly38Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.112G>C
  hgvsp: ENSP00000435795.1:p.Glu38Gln
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg90Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-112661314-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661314
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661314
    reference: chr 10
allele count: 1
allele frequency: 7.034327518289252e-5
allele num: 14216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.28G>C
  hgvsp: ENSP00000431936.1:p.Glu10Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.94G>C
  hgvsp: ENSP00000474675.1:p.Glu32Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3390G>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.251G>C
  hgvsp: ENSP00000433157.1:p.Gly84Ala
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.28G>C
  hgvsp: ENSP00000432849.1:p.Glu10Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.94G>C
  hgvsp: ENSP00000436622.1:p.Glu32Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.94G>C
  hgvsp: ENSP00000435795.1:p.Glu32Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1030G>C
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly84Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

10-112661316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661316
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661316
    reference: chr 10
allele count: 2
allele frequency: 1.40686550365785e-4
allele num: 14216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.92G>A
  hgvsp: ENSP00000435795.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.249G>A
  hgvsp: ENST00000454061.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.26G>A
  hgvsp: ENSP00000431936.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3388G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.92G>A
  hgvsp: ENSP00000474675.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.92G>A
  hgvsp: ENSP00000436622.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1032G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.26G>A
  hgvsp: ENSP00000432849.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg31Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

10-112661355-G-GAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661355
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661357
    reference: chr 10
allele count: 1
allele frequency: 7.033338022225348e-5
allele num: 14218
alternate allele: GAT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.51_52dupAT
  hgvsp: ENSP00000436622.1:p.Ser18TyrfsTer10
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.51_52dupAT
  hgvsp: ENSP00000435795.1:p.Ser18TyrfsTer10
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1073_38-1072dupAT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.208_209dupAT
  hgvsp: ENSP00000433157.1:p.Gln71SerfsTer76
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3347_3348dupAT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-14_-2-13dupAT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.51_52dupAT
  hgvsp: ENSP00000474675.1:p.Ser18TyrfsTer10
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-16_-15dupAT
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln71SerfsTer76
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-112661365-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661365
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661365
    reference: chr 10
allele count: 1
allele frequency: 7.034327518289252e-5
allele num: 14216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.43A>C
  hgvsp: ENSP00000436622.1:p.Asn15His
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3339A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.43A>C
  hgvsp: ENSP00000474675.1:p.Asn15His
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-22A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.43A>C
  hgvsp: ENSP00000435795.1:p.Asn15His
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.200A>C
  hgvsp: ENSP00000433157.1:p.Lys67Thr
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1081A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-24A>C
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys67Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

10-112661376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661376
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661376
    reference: chr 10
allele count: 2
allele frequency: 1.407261469180974e-4
allele num: 14212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-33T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.195-6T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1092T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3328T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6T>C
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: c.195-6T>C
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-112661414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112661414
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112661414
    reference: chr 10
allele count: 7
allele frequency: 4.928189242466911e-4
allele num: 14204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-1130G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000605265
  gene symbol: BBIP1
  hgvsc: ENST00000605265.1:n.3290G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-44G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-71G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-44G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.195-44G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-44G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-44G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

10-112667398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667398
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667398
    reference: chr 10
allele count: 12
allele frequency: 2.42914979757085e-3
allele num: 4940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6028G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6028G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.337G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6028G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6028G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6055G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7114G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.194+40G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

10-112667399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667399
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667399
    reference: chr 10
allele count: 1
allele frequency: 1.977066034005536e-4
allele num: 5058
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.194+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.336T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6029T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7115T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6029T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6029T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6029T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6056T>C
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

10-112667413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667413
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667413
    reference: chr 10
allele count: 18
allele frequency: 3.202846975088968e-3
allele num: 5620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7129C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6070C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6043C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.322C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6043C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6043C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6043C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.194+25C>T
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

10-112667427-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667427
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667427
    reference: chr 10
allele count: 1
allele frequency: 1.378929950358522e-4
allele num: 7252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6057A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6084A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.308A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6057A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.194+11A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6057A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6057A>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7143A>C
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

10-112667440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667440
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667440
    reference: chr 10
allele count: 1
allele frequency: 1.046243984097091e-4
allele num: 9558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6070G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6070G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.295G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6070G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6070G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.192G>A
  hgvsp: ENST00000454061.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6097G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7156G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
hgvs: c.192G>A
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

10-112667441-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667441
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667441
    reference: chr 10
allele count: 16
allele frequency: 1.605136436597111e-3
allele num: 9968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6071C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7157C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6071C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.191C>G
  hgvsp: ENSP00000433157.1:p.Ala64Gly
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.294C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6071C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6071C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6098C>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala64Gly
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

10-112667447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667447
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667447
    reference: chr 10
allele count: 1
allele frequency: 9.259259259259259e-5
allele num: 10800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6104A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6077A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.288A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6077A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7163A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6077A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6077A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.185A>G
  hgvsp: ENSP00000433157.1:p.Lys62Arg
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys62Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

10-112667460-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667460
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667460
    reference: chr 10
allele count: 1
allele frequency: 8.576329331046312e-5
allele num: 11660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6090G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6090G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.275G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6090G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6090G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.172G>A
  hgvsp: ENSP00000433157.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7176G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6117G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly58Arg
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

10-112667461-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667461
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667461
    reference: chr 10
allele count: 1
allele frequency: 8.49762066621346e-5
allele num: 11768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6091C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.171C>A
  hgvsp: ENST00000454061.1:c.171C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6091C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6091C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7177C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.274C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6118C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6091C>A
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile57Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-112667506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667506
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667506
    reference: chr 10
allele count: 261
allele frequency: 2.125407166123779e-2
allele num: 12280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7222C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6136C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6136C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.126C>T
  hgvsp: ENST00000454061.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6163C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.229C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6136C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6136C>T
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser42Ser
num of homozygotes: 8
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

10-112667515-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667515
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667515
    reference: chr 10
allele count: 4
allele frequency: 3.257328990228013e-4
allele num: 12280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6145A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6145A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6145A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7231A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6145A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.117A>G
  hgvsp: ENST00000454061.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6172A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.220A>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln39Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

10-112667579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112667579
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112667579
    reference: chr 10
allele count: 1
allele frequency: 8.454514710855597e-5
allele num: 11828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.38-7295A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.38-6209A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.53A>G
  hgvsp: ENSP00000433157.1:p.Asn18Ser
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-29-6209A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.38-6209A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.38-6209A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.156A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-2-6236A>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn18Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

10-112677840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677840
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677840
    reference: chr 10
allele count: 5
allele frequency: 4.061738424045491e-4
allele num: 12310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.37+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.140+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.37+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.37+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.173T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.37+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+1039T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.37+39T>C
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+1039T>C
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

10-112677841-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677841
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677841
    reference: chr 10
allele count: 1
allele frequency: 8.122157244964262e-5
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.140+38A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.37+38A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+1038A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.172A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.37+38A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.37+38A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+1038A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.37+38A>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.37+38A>T
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/10-112677863-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677863
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677863
    reference: chr 10
allele count: 4
allele frequency: 3.249390739236393e-4
allele num: 12310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+1016G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.37+16G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.140+16G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.37+16G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.37+16G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+1016G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.37+16G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.150G>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.37+16G>T
  variant of: http://identifiers.org/hgnc/28093
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-112677885-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677885
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677885
    reference: chr 10
allele count: 1
allele frequency: 8.115565654926148e-5
allele num: 12322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.31C>A
  hgvsp: ENSP00000435795.1:p.Leu11Ile
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.31C>A
  hgvsp: ENSP00000436622.1:p.Leu11Ile
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.31C>A
  hgvsp: ENSP00000432274.1:p.Leu11Ile
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+994C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.134C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.128C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.31C>A
  hgvsp: ENSP00000433157.1:p.Leu11Ile
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+994C>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.31C>A
  hgvsp: ENSP00000474675.1:p.Leu11Ile
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu11Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

10-112677921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677921
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677921
    reference: chr 10
allele count: 9
allele frequency: 7.305194805194805e-4
allele num: 12320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-6G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.92G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.98G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+958G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+958G>A
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 9.75e1
  variant carriers: 9
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

10-112677924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677924
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677924
    reference: chr 10
allele count: 1
allele frequency: 8.116883116883117e-5
allele num: 12320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+955C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.95C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.89C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+955C>T
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

10-112677927-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677927
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677927
    reference: chr 10
allele count: 3
allele frequency: 2.434669696477844e-4
allele num: 12322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+952A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+952A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-12A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.92A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.86A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-12A>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

10-112677941-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677941
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677942
    reference: chr 10
allele count: 3
allele frequency: 2.435460301997078e-4
allele num: 12318
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-27dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-27dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-27dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.77dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-27dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-27dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+937dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.71dupT
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+937dupT
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

10-112677943-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677943
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677943
    reference: chr 10
allele count: 1
allele frequency: 8.119519324455992e-5
allele num: 12316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+936C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-28C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.70C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.76C>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+936C>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

10-112677949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112677949
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112677949
    reference: chr 10
allele count: 1
allele frequency: 8.118201006656925e-5
allele num: 12318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000474675
  ensembl transcript: ENST00000605742
  gene symbol: BBIP1
  hgvsc: ENST00000605742.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000436622
  ensembl transcript: ENST00000448814
  gene symbol: BBIP1
  hgvsc: ENST00000448814.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000435795
  ensembl transcript: ENST00000398289
  gene symbol: BBIP1
  hgvsc: ENST00000398289.2:c.-34A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000431936
  ensembl transcript: ENST00000436562
  gene symbol: BBIP1
  hgvsc: ENST00000436562.1:c.-3+930A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432274
  ensembl transcript: ENST00000423273
  gene symbol: BBIP1
  hgvsc: ENST00000423273.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000433157
  ensembl transcript: ENST00000454061
  gene symbol: BBIP1
  hgvsc: ENST00000454061.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000422050
  gene symbol: BBIP1
  hgvsc: ENST00000422050.1:n.70A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000214413
  ensembl transcript: ENST00000431847
  gene symbol: BBIP1
  hgvsc: ENST00000431847.1:n.64A>G
  variant of: http://identifiers.org/hgnc/28093
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000214413
  ensembl protein: ENSP00000432849
  ensembl transcript: ENST00000447005
  gene symbol: BBIP1
  hgvsc: ENST00000447005.1:c.-30+930A>G
  variant of: http://identifiers.org/hgnc/28093
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

10-112696331-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696331
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696331
    reference: chr 10
allele count: 1
allele frequency: 1.056189269117026e-4
allele num: 9468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16916A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16916A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16916A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16427A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15035A>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19745
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10046
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

10-112696338-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696338
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696338
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 9610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16923T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16923T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16923T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16434T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15028T>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

10-112696345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696345
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696345
    reference: chr 10
allele count: 2
allele frequency: 2.621231979030144e-4
allele num: 7630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16930T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16930T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16441T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16930T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15021T>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12142
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-112696345-TCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696345
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696343
    reference: chr 10
allele count: 1
allele frequency: 1.310615989515072e-4
allele num: 7630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16931_-235+16932delCC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16931_55+16932delCC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15020_66-15019delCC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16442_144+16443delCC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16931_-235+16932delCC
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TCC
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

10-112696347-C-CTTTTTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696356
    reference: chr 10
allele count: 211
allele frequency: 3.313442211055277e-2
allele num: 6368
alternate allele: CTTTTTTTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 88
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

10-112696347-C-CTTTTTTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696357
    reference: chr 10
allele count: 544
allele frequency: 8.542713567839195e-2
allele num: 6368
alternate allele: CTTTTTTTTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 21
num of homozygotes: 216
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

10-112696347-C-CTTTTTTTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696358
    reference: chr 10
allele count: 1002
allele frequency: 1.573492462311558e-1
allele num: 6368
alternate allele: CTTTTTTTTTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 38
num of homozygotes: 392
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS

10-112696347-C-CTTTTTTTTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696359
    reference: chr 10
allele count: 700
allele frequency: 1.099246231155779e-1
allele num: 6368
alternate allele: CTTTTTTTTTTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 22
num of homozygotes: 291
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

10-112696347-C-CTTTTTTTTTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696360
    reference: chr 10
allele count: 272
allele frequency: 4.271356783919598e-2
allele num: 6368
alternate allele: CTTTTTTTTTTTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 4
num of homozygotes: 119
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

10-112696347-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696346
    reference: chr 10
allele count: 1811
allele frequency: 2.843907035175879e-1
allele num: 6368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16947delT
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16947delT
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16947delT
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16458delT
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15004delT
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.5e0
  variant carriers: 1023
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 530
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 588
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 7.5e0
  variant carriers: 1550
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 7.5e0
  variant carriers: 809
genotype quality: GenotypeQuality
  all individuals: 13440
  bin: 2.5e0
  variant carriers: 305
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 1.75e1
  variant carriers: 469
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 715
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 707
num of homozygotes: 156
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

10-112696362-TAACA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696358
    reference: chr 10
allele count: 1318
allele frequency: 5.335168393782384e-2
allele num: 24704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15003_66-15000delAACA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16948_-235+16951delAACA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16459_144+16462delAACA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16948_55+16951delAACA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16948_-235+16951delAACA
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 626
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 1141
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 99
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: TAACA
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-112696362-TAACAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696357
    reference: chr 10
allele count: 1369
allele frequency: 5.541612694300518e-2
allele num: 24704
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 2345
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 991
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 936
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 2.25e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 263
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 255
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 9.75e1
  variant carriers: 1790
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 319
num of homozygotes: 0
population: African
  type: Population
  allele count: 127
  allele frequency: 6.879739978331528e-2
  allele num: 1846
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 8
  allele frequency: 3.361344537815126e-2
  allele num: 238
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 233
  allele frequency: 1.238044633368757e-1
  allele num: 1882
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 716
  allele frequency: 7.12863401035444e-2
  allele num: 10044
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
reference allele: TAACAG
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-112696362-TAACAGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696355
    reference: chr 10
allele count: 213
allele frequency: 8.622085492227979e-3
allele num: 24704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 494
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 77
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: TAACAGTC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

10-112696362-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696363
    reference: chr 10
allele count: 33
allele frequency: 1.335816062176166e-3
allele num: 24704
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-15002dupA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16460dupA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16949dupA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16949dupA
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16949dupA
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

10-112696362-T-TTTTTTTTTTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696373
    reference: chr 10
allele count: 5
allele frequency: 2.023963730569948e-4
allele num: 24704
alternate allele: TTTTTTTTTTTA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

10-112696362-T-TTTTTTTTTTTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696374
    reference: chr 10
allele count: 4
allele frequency: 1.619170984455959e-4
allele num: 24704
alternate allele: TTTTTTTTTTTTA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20778
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

10-112696367-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696367
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696367
    reference: chr 10
allele count: 1292
allele frequency: 2.06126356094448e-1
allele num: 6268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16952G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14999G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16952G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16463G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16952G>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 16443
  bin: 2.5e0
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 14343
  bin: 7.5e0
  variant carriers: 1109
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.25e1
  variant carriers: 599
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 6.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 1.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 2.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 1.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 19263
  bin: 2.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 6.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 11615
  bin: 7.5e0
  variant carriers: 28
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

10-112696368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696368
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696368
    reference: chr 10
allele count: 1
allele frequency: 3.302509907529722e-5
allele num: 30280
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16953T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16953T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14998T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16953T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16464T>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17698
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6338
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-112696368-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696368
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696367
    reference: chr 10
allele count: 1
allele frequency: 3.302509907529722e-5
allele num: 30280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16954delC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16954delC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16954delC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16465delC
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14997delC
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16636
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17698
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: TC
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-112696369-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696369
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696369
    reference: chr 10
allele count: 1
allele frequency: 9.960159362549801e-5
allele num: 10040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16954C>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16465C>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14997C>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16954C>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16954C>A
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23662
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-112696369-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696369
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696369
    reference: chr 10
allele count: 2798
allele frequency: 2.786852589641434e-1
allele num: 10040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16954C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16954C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16954C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16465C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14997C>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 7.5e0
  variant carriers: 3346
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 1.25e1
  variant carriers: 1612
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 2.5e0
  variant carriers: 1291
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.75e1
  variant carriers: 692
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 23662
  bin: 2.5e0
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 11606
  bin: 7.5e0
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 5161
  bin: 2.25e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 422
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 3668
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.75e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 317
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 248
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

10-112696373-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696373
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696373
    reference: chr 10
allele count: 2616
allele frequency: 1.106786258250127e-1
allele num: 23636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16958A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16958A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14993A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16469A>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16958A>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 18361
  bin: 2.5e0
  variant carriers: 1708
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 7.5e0
  variant carriers: 3058
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 664
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.25e1
  variant carriers: 1484
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.75e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 7452
  bin: 2.5e0
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.25e1
  variant carriers: 439
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 9.75e1
  variant carriers: 3707
genotype quality: GenotypeQuality
  all individuals: 11292
  bin: 2.25e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 5.25e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.75e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.75e1
  variant carriers: 273
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 1.75e1
  variant carriers: 173
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 3.25e1
  variant carriers: 287
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 355
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 14674
  bin: 7.5e0
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 1.25e1
  variant carriers: 135
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

10-112696374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696374
    reference: chr 10
allele count: 12
allele frequency: 3.993078663649674e-4
allele num: 30052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16470T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16959T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14992T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16959T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16959T>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20826
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18480
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14617
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16097
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-112696390-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696390
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696390
    reference: chr 10
allele count: 1
allele frequency: 3.007337904486948e-5
allele num: 33252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14976A>G
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16975A>G
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.602T>C
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16975A>G
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16486A>G
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16975A>G
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24990
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

10-112696394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696394
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696394
    reference: chr 10
allele count: 5
allele frequency: 1.473795908742557e-4
allele num: 33926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16979C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14972C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.598G>A
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16979C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16490C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16979C>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25929
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7057
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12517
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

10-112696395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696395
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696395
    reference: chr 10
allele count: 1
allele frequency: 2.932551319648094e-5
allele num: 34100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14971G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16491G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16980G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16980G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16980G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.597C>T
  variant of: http://identifiers.org/hgnc/23737
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26207
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

10-112696395-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696395
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696395
    reference: chr 10
allele count: 3
allele frequency: 8.797653958944282e-5
allele num: 34100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16980G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16980G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16491G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14971G>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.597C>A
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16980G>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26207
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

10-112696407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696407
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696407
    reference: chr 10
allele count: 1
allele frequency: 2.77069710739222e-5
allele num: 36092
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.585C>T
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14959G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16992G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16503G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16992G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16992G>A
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10433
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

10-112696409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696409
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696409
    reference: chr 10
allele count: 1
allele frequency: 2.736127831892306e-5
allele num: 36548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16994C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.583G>A
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16994C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16505C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14957C>T
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16994C>T
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

10-112696414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696414
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696414
    reference: chr 10
allele count: 22
allele frequency: 5.870110464806019e-4
allele num: 37478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+16999G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16510G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.578C>T
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+16999G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14952G>A
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+16999G>A
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28916
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

10-112696416-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696416
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696416
    reference: chr 10
allele count: 1
allele frequency: 2.646062658763759e-5
allele num: 37792
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+17001G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14950G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16512G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.576C>G
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+17001G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+17001G>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29031
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-112696426-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696426
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696426
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 38094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14940G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+17011G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.566C>G
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+17011G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16522G>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+17011G>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28638
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

10-112696430-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696430
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696430
    reference: chr 10
allele count: 3
allele frequency: 8.034279592929834e-5
allele num: 37340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16526T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14936T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+17015T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+17015T>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.562A>G
  variant of: http://identifiers.org/hgnc/23737
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+17015T>C
  variant of: http://identifiers.org/hgnc/15454
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-112696438-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112696438
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112696438
    reference: chr 10
allele count: 2
allele frequency: 5.634437683119225e-5
allele num: 35496
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000358464
  ensembl transcript: ENST00000369452
  gene symbol: SHOC2
  hgvsc: ENST00000369452.4:c.-235+17023A>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl protein: ENSP00000265277
  ensembl transcript: ENST00000265277
  gene symbol: SHOC2
  hgvsc: ENST00000265277.5:c.-235+17023A>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000480155
  gene symbol: SHOC2
  hgvsc: ENST00000480155.1:n.66-14928A>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489390
  gene symbol: SHOC2
  hgvsc: ENST00000489390.1:n.55+17023A>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108061
  ensembl transcript: ENST00000489783
  gene symbol: SHOC2
  hgvsc: ENST00000489783.1:n.144+16534A>C
  variant of: http://identifiers.org/hgnc/15454
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234118
  ensembl transcript: ENST00000430133
  gene symbol: RPL13AP6
  hgvsc: ENST00000430133.1:n.554T>G
  variant of: http://identifiers.org/hgnc/23737
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6671
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.316829075585989e-4
allele num: 7594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.03361e5

QD
type: SiteQuality
SIO_000300: 1.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.244e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.376344086021506e-3
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.76056338028169e-3
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

QD
type: SiteQuality
SIO_000300: 1.457e1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 2.01267e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 9.710000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.411233418007338e-4
allele num: 7086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

QD
type: SiteQuality
SIO_000300: 1.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.908e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

DP
type: SiteQuality
SIO_000300: 1.91265e5

GenotypeQuality
all individuals: 2509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 1.882057716436637e-3
allele num: 1594
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.95159386068477e-4
allele num: 3388
num of homozygotes: 0

FS
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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DP
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 4884
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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East Asian
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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FS
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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VQSLOD
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QD
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MQ
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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East Asian
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European (Finnish)
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African
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South Asian
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QD
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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African
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MQRankSum
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.2806e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

QD
type: SiteQuality
SIO_000300: 1.852e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

MQ
type: SiteQuality
SIO_000300: 6.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
all individuals: 867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 28
bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.435e-1

DP
type: SiteQuality
SIO_000300: 3.28021e5

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

QD
type: SiteQuality
SIO_000300: 7.36e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.165289256198347e-4
allele num: 3872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

FS
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 3.27901e5

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 557
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.071428571428571e-2
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3866
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.25886e5

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 8.429e0

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 12

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 2.678571428571428e-2
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.819e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

DP
type: SiteQuality
SIO_000300: 7.0429e4

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 333
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.555555555555556e-4
allele num: 1800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.727e0

DP
type: SiteQuality
SIO_000300: 7.0636e4

VQSLOD
type: SiteQuality
SIO_000300: -1.574e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

GenotypeQuality
all individuals: 36
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 68
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variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 6.31578947368421e-3
allele num: 2850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.178e1

FS
type: SiteQuality
SIO_000300: 3.202e0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.67e-2

DP
type: SiteQuality
SIO_000300: 7.8023e4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.173622704507513e-4
allele num: 2396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.091e0

QD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 9.506e4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.380662609871535e-4
allele num: 2958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

DP
type: SiteQuality
SIO_000300: 1.17692e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.289e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.51e-2

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 1533
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GenotypeQuality
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GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 5
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 2.697235333782873e-3
allele num: 5932
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
SIO_000300: 1.504e1

DP
type: SiteQuality
SIO_000300: 1.21538e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4482
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.530924678505818e-4
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.169e1

DP
type: SiteQuality
SIO_000300: 1.29684e5

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.398992725237829e-4
allele num: 7148
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.044e0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.40068e5

QD
type: SiteQuality
SIO_000300: 1.72e1

VQSLOD
type: SiteQuality
SIO_000300: -1.765e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.381597126277977e-4
allele num: 7238
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.981e0

VQSLOD
type: SiteQuality
SIO_000300: -5.71e-1

QD
type: SiteQuality
SIO_000300: 1.617e1

DP
type: SiteQuality
SIO_000300: 1.41077e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5
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variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 9.75e1
variant carriers: 250

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 216
allele frequency: 2.836879432624113e-2
allele num: 7614
num of homozygotes: 7

Other
type: Population
allele count: 2
allele frequency: 1.538461538461539e-2
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 1.114827201783724e-2
allele num: 3588
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.571428571428571e-3
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.53e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.53489e5

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 1414
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 442
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variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.252100840336134e-4
allele num: 7616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 5.327e0

DP
type: SiteQuality
SIO_000300: 1.48077e5

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4978
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 2
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.365001365001365e-4
allele num: 7326
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.669e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

VQSLOD
type: SiteQuality
SIO_000300: -2.837e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

MQRankSum
type: SiteQuality
SIO_000300: -2.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.4021e5

FS
type: SiteQuality
SIO_000300: 1.7789e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3116
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.563402467839327e-4
allele num: 7618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

QD
type: SiteQuality
SIO_000300: 1.51e1

DP
type: SiteQuality
SIO_000300: 2.42367e5

FS
type: SiteQuality
SIO_000300: 9.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.178e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 382
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 3117
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.066e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.42359e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.094e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1400
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GenotypeQuality
all individuals: 391
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 579
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GenotypeQuality
all individuals: 517
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GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.250721974271463e-4
allele num: 7618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: -8.54e-1

DP
type: SiteQuality
SIO_000300: 2.42658e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

FS
type: SiteQuality
SIO_000300: 7.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 593
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

MQ
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SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: -3.05e-2

BaseQRankSum
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SIO_000300: -3.346e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.32e0

DP
type: SiteQuality
SIO_000300: 2.42826e5

ReadPosRankSum
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SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 1.181412444211079e-3
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

FS
type: SiteQuality
SIO_000300: 5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

QD
type: SiteQuality
SIO_000300: 9.66e0

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

DP
type: SiteQuality
SIO_000300: 2.43466e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.631e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.511e0

FS
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 2.43192e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.938041480703597e-4
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.43289e5

QD
type: SiteQuality
SIO_000300: 1.114e1

BaseQRankSum
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SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.894e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 5.376344086021506e-3
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
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SIO_000300: 1.21e-1

ClippingRankSum
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SIO_000300: 2.42e-1

VQSLOD
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SIO_000300: 1.69e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.43443e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
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Other
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allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

East Asian
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BaseQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

DP
type: SiteQuality
SIO_000300: 2.434e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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African
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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allele frequency: 3.063725490196078e-4
allele num: 3264
num of homozygotes: 0

Other
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num of homozygotes: 0

FS
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.547e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 3.35127e5

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.63e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.802721088435374e-4
allele num: 2940
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

QD
type: SiteQuality
SIO_000300: 1.688e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 3.75927e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.45e-2

GenotypeQuality
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.263707571801567e-4
allele num: 3064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

QD
type: SiteQuality
SIO_000300: 1.688e1

DP
type: SiteQuality
SIO_000300: 3.75927e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 8

Latino
type: Population
allele count: 12
allele frequency: 1.132075471698113e-1
allele num: 106
num of homozygotes: 6

East Asian
type: Population
allele count: 17
allele frequency: 8.585858585858586e-2
allele num: 198
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 3.183856502242152e-2
allele num: 2230
num of homozygotes: 28

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

South Asian
type: Population
allele count: 98
allele frequency: 3.19634703196347e-2
allele num: 3066
num of homozygotes: 43

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.807692307692308e-3
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 2.459016393442623e-2
allele num: 488
num of homozygotes: 4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

DP
type: SiteQuality
SIO_000300: 3.24173e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 178
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 23

European (Finnish)
type: Population
allele count: 21
allele frequency: 1.009615384615385e-1
allele num: 208
num of homozygotes: 3

African
type: Population
allele count: 29
allele frequency: 5.942622950819672e-2
allele num: 488
num of homozygotes: 10

Other
type: Population
allele count: 6
allele frequency: 8.333333333333333e-2
allele num: 72
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 205
allele frequency: 9.192825112107623e-2
allele num: 2230
num of homozygotes: 81

South Asian
type: Population
allele count: 241
allele frequency: 7.860404435746901e-2
allele num: 3066
num of homozygotes: 102

Latino
type: Population
allele count: 17
allele frequency: 1.60377358490566e-1
allele num: 106
num of homozygotes: 7

East Asian
type: Population
allele count: 25
allele frequency: 1.262626262626263e-1
allele num: 198
num of homozygotes: 10

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.209e1

DP
type: SiteQuality
SIO_000300: 3.24173e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 178
bin: 6.75e1
variant carriers: 37

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 56

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 34

European (Non-Finnish)
type: Population
allele count: 403
allele frequency: 1.807174887892377e-1
allele num: 2230
num of homozygotes: 154

East Asian
type: Population
allele count: 22
allele frequency: 1.111111111111111e-1
allele num: 198
num of homozygotes: 8

South Asian
type: Population
allele count: 445
allele frequency: 1.451402478799739e-1
allele num: 3066
num of homozygotes: 183

Other
type: Population
allele count: 10
allele frequency: 1.388888888888889e-1
allele num: 72
num of homozygotes: 3

Latino
type: Population
allele count: 38
allele frequency: 3.584905660377358e-1
allele num: 106
num of homozygotes: 18

European (Finnish)
type: Population
allele count: 18
allele frequency: 8.653846153846154e-2
allele num: 208
num of homozygotes: 3

African
type: Population
allele count: 66
allele frequency: 1.352459016393443e-1
allele num: 488
num of homozygotes: 23

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

DP
type: SiteQuality
SIO_000300: 3.24173e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 22

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 178
bin: 6.75e1
variant carriers: 27

Latino
type: Population
allele count: 11
allele frequency: 1.037735849056604e-1
allele num: 106
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 7
allele frequency: 3.365384615384615e-2
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 1.111111111111111e-1
allele num: 198
num of homozygotes: 11

South Asian
type: Population
allele count: 398
allele frequency: 1.298108284409654e-1
allele num: 3066
num of homozygotes: 174

Other
type: Population
allele count: 12
allele frequency: 1.666666666666667e-1
allele num: 72
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 219
allele frequency: 9.820627802690583e-2
allele num: 2230
num of homozygotes: 84

African
type: Population
allele count: 31
allele frequency: 6.352459016393443e-2
allele num: 488
num of homozygotes: 11

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 3.24173e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.209e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 178
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 4

South Asian
type: Population
allele count: 171
allele frequency: 5.577299412915851e-2
allele num: 3066
num of homozygotes: 77

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 3.587443946188341e-2
allele num: 2230
num of homozygotes: 34

East Asian
type: Population
allele count: 2
allele frequency: 1.01010101010101e-2
allele num: 198
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.807692307692308e-3
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.254098360655738e-2
allele num: 488
num of homozygotes: 4

Latino
type: Population
allele count: 2
allele frequency: 1.886792452830189e-2
allele num: 106
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 6.944444444444445e-2
allele num: 72
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.24173e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

GenotypeQuality
all individuals: 178
bin: 6.75e1
variant carriers: 77

GenotypeQuality
all individuals: 196
bin: 6.25e1
variant carriers: 84

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 70

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 150

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 45

Other
type: Population
allele count: 17
allele frequency: 2.361111111111111e-1
allele num: 72
num of homozygotes: 1

Latino
type: Population
allele count: 14
allele frequency: 1.320754716981132e-1
allele num: 106
num of homozygotes: 1

East Asian
type: Population
allele count: 57
allele frequency: 2.878787878787879e-1
allele num: 198
num of homozygotes: 5

African
type: Population
allele count: 192
allele frequency: 3.934426229508197e-1
allele num: 488
num of homozygotes: 23

European (Non-Finnish)
type: Population
allele count: 622
allele frequency: 2.789237668161435e-1
allele num: 2230
num of homozygotes: 62

South Asian
type: Population
allele count: 825
allele frequency: 2.690802348336595e-1
allele num: 3066
num of homozygotes: 50

European (Finnish)
type: Population
allele count: 84
allele frequency: 4.038461538461539e-1
allele num: 208
num of homozygotes: 14

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

DP
type: SiteQuality
SIO_000300: 3.24173e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.116e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 3844
bin: 9.75e1
variant carriers: 1811

GenotypeQuality
all individuals: 3162
bin: 6.25e1
variant carriers: 97

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 46

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 53

GenotypeQuality
all individuals: 1507
bin: 6.75e1
variant carriers: 110

European (Non-Finnish)
type: Population
allele count: 689
allele frequency: 6.859816806053365e-2
allele num: 10044
num of homozygotes: 0

South Asian
type: Population
allele count: 286
allele frequency: 3.44993968636912e-2
allele num: 8290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 31
allele frequency: 1.777522935779817e-2
allele num: 1744
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 7.575757575757576e-2
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 86
allele frequency: 4.658721560130011e-2
allele num: 1846
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 3.781512605042017e-2
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 167
allele frequency: 8.873538788522849e-2
allele num: 1882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.7036e1

DP
type: SiteQuality
SIO_000300: 5.3358e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

South Asian
type: Population
allele count: 154
allele frequency: 1.857659831121834e-2
allele num: 8290
num of homozygotes: 0

Latino
type: Population
allele count: 85
allele frequency: 1.287878787878788e-1
allele num: 660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 46
allele frequency: 2.637614678899083e-2
allele num: 1744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

FS
type: SiteQuality
SIO_000300: 3.7036e1

DP
type: SiteQuality
SIO_000300: 5.3358e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

GenotypeQuality
all individuals: 3844
bin: 9.75e1
variant carriers: 161

GenotypeQuality
all individuals: 6226
bin: 2.25e1
variant carriers: 65

GenotypeQuality
all individuals: 607
bin: 7.75e1
variant carriers: 54

GenotypeQuality
all individuals: 1507
bin: 6.75e1
variant carriers: 44

East Asian
type: Population
allele count: 43
allele frequency: 2.284803400637619e-2
allele num: 1882
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.201680672268907e-3
allele num: 238
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.878787878787879e-2
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 9.750812567713976e-3
allele num: 1846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 100
allele frequency: 9.956192751891677e-3
allele num: 10044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 6.307339449541285e-3
allele num: 1744
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.533172496984318e-3
allele num: 8290
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

DP
type: SiteQuality
SIO_000300: 5.3358e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

FS
type: SiteQuality
SIO_000300: 3.7036e1

MQ
type: SiteQuality
SIO_000300: 5.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 793
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6226
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3844
bin: 9.75e1
variant carriers: 26

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.443908323281062e-4
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.201680672268907e-3
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 1.328374070138151e-2
allele num: 1882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

FS
type: SiteQuality
SIO_000300: 3.7036e1

DP
type: SiteQuality
SIO_000300: 5.3358e5

GenotypeQuality
all individuals: 2048
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.313496280552603e-4
allele num: 1882
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.825090470446321e-4
allele num: 8290
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 5.3358e5

FS
type: SiteQuality
SIO_000300: 3.7036e1

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.062699256110521e-3
allele num: 1882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.201680672268907e-3
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.765e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

FS
type: SiteQuality
SIO_000300: 3.7036e1

VQSLOD
type: SiteQuality
SIO_000300: -3.711e-1

QD
type: SiteQuality
SIO_000300: 6.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 5.3358e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 1843
bin: 9.75e1
variant carriers: 1807

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 31

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 53

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 29

African
type: Population
allele count: 84
allele frequency: 1.021897810218978e-1
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 279
allele frequency: 2.309602649006623e-1
allele num: 1208
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 2.5e-1
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 3.676470588235294e-1
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 167
allele frequency: 2.325905292479109e-1
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 9.433962264150944e-2
allele num: 318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 674
allele frequency: 2.221489782465392e-1
allele num: 3034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.032e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.976e-1

DP
type: SiteQuality
SIO_000300: 5.10918e5

FS
type: SiteQuality
SIO_000300: 3.1195e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 1.096e1

GenotypeQuality
all individuals: 653
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.447125409591897e-5
allele num: 13428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.76458e5

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.89e-2

FS
type: SiteQuality
SIO_000300: 3.081e0

MQ
type: SiteQuality
SIO_000300: 5.254e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6338
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.447125409591897e-5
allele num: 13428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.31e1

DP
type: SiteQuality
SIO_000300: 6.76458e5

MQ
type: SiteQuality
SIO_000300: 5.254e1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.89e-2

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.142506142506142e-4
allele num: 1628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.67855e5

FS
type: SiteQuality
SIO_000300: 3.0626e1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.172e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

VQSLOD
type: SiteQuality
SIO_000300: -7.09e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 651
bin: 6.25e1
variant carriers: 342

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 135

GenotypeQuality
all individuals: 745
bin: 2.75e1
variant carriers: 280

GenotypeQuality
all individuals: 391
bin: 7.75e1
variant carriers: 356

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 178

Latino
type: Population
allele count: 152
allele frequency: 4.108108108108108e-1
allele num: 370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1456
allele frequency: 2.895783611774065e-1
allele num: 5028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 80
allele frequency: 1.913875598086124e-1
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 444
allele frequency: 2.727272727272727e-1
allele num: 1628
num of homozygotes: 0

African
type: Population
allele count: 217
allele frequency: 1.870689655172414e-1
allele num: 1160
num of homozygotes: 0

East Asian
type: Population
allele count: 432
allele frequency: 3.130434782608696e-1
allele num: 1380
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 3.035714285714285e-1
allele num: 56
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 6.67855e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

VQSLOD
type: SiteQuality
SIO_000300: -7.09e0

FS
type: SiteQuality
SIO_000300: 3.0626e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 5.177e1

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 132

GenotypeQuality
all individuals: 2252
bin: 6.25e1
variant carriers: 346

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 126

GenotypeQuality
all individuals: 477
bin: 5.75e1
variant carriers: 227

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 185

East Asian
type: Population
allele count: 438
allele frequency: 1.759036144578313e-1
allele num: 2490
num of homozygotes: 0

South Asian
type: Population
allele count: 439
allele frequency: 6.305659293306522e-2
allele num: 6962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1339
allele frequency: 1.252103983542173e-1
allele num: 10694
num of homozygotes: 0

Other
type: Population
allele count: 19
allele frequency: 1.055555555555556e-1
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 110
allele frequency: 1.833333333333333e-1
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 70
allele frequency: 9.859154929577464e-2
allele num: 710
num of homozygotes: 0

African
type: Population
allele count: 201
allele frequency: 1.005e-1
allele num: 2000
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.042e0

FS
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 2.892e1

MQ
type: SiteQuality
SIO_000300: 5.625e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 6.38575e5

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4691
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1330
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 698
bin: 9.75e1
variant carriers: 15

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2826
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.97456279809221e-4
allele num: 2516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 7.432733759476735e-4
allele num: 13454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 5.778e0

MQ
type: SiteQuality
SIO_000300: 5.499e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

DP
type: SiteQuality
SIO_000300: 6.13334e5

QD
type: SiteQuality
SIO_000300: 1.187e1

VQSLOD
type: SiteQuality
SIO_000300: -9.347e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 23322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.576351440220966e-5
allele num: 15206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.167e0

FS
type: SiteQuality
SIO_000300: 2.632e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 6.64183e5

MQ
type: SiteQuality
SIO_000300: 5.733e1

QD
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 1668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1747
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.227888960619754e-4
allele num: 15490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 6.78211e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

QD
type: SiteQuality
SIO_000300: 8.94e0

MQ
type: SiteQuality
SIO_000300: 5.335e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 2.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

GenotypeQuality
all individuals: 1368
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1477
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.39386189258312e-5
allele num: 15640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.736e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 8.358000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

DP
type: SiteQuality
SIO_000300: 6.83119e5

GenotypeQuality
all individuals: 428
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.207505518763797e-4
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.623188405797101e-3
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 1.095e1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 6.83119e5

FS
type: SiteQuality
SIO_000300: 8.358000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2218
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.990430622009569e-4
allele num: 3344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.595e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

FS
type: SiteQuality
SIO_000300: 8.279999999999999e0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.656e0

DP
type: SiteQuality
SIO_000300: 7.16998e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.084598698481562e-4
allele num: 9220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.879e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 7.23372e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.071e0

FS
type: SiteQuality
SIO_000300: 1.4211e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 6.91e0

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 1.014313084638792e-3
allele num: 17746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.755926251097454e-3
allele num: 2278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.107e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.40317e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 29606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10562
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.568548836173293e-5
allele num: 17958
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 5.99e0

MQ
type: SiteQuality
SIO_000300: 5.652e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.44578e5

VQSLOD
type: SiteQuality
SIO_000300: -1.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

GenotypeQuality
all individuals: 287
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9883
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.43926e5

QD
type: SiteQuality
SIO_000300: 6.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.571e0

MQ
type: SiteQuality
SIO_000300: 5.101e1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.253796095444685e-4
allele num: 9220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

DP
type: SiteQuality
SIO_000300: 7.25178e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
SIO_000300: 4.152e0

MQ
type: SiteQuality
SIO_000300: 5.697e1

VQSLOD
type: SiteQuality
SIO_000300: -1.151e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1