10-99344542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344542
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344542
    reference: chr 10
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.82G>A
  hgvsp: ENSP00000359680.4:p.Gly28Arg
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.463G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.82G>A
  hgvsp: ENSP00000452243.1:p.Gly28Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.82G>A
  hgvsp: ENSP00000359683.3:p.Gly28Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.82G>A
  hgvsp: ENSP00000359681.4:p.Gly28Arg
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly28Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

10-99344545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344545
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344545
    reference: chr 10
allele count: 5
allele frequency: 4.136881122584061e-5
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.85G>A
  hgvsp: ENSP00000452243.1:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.85G>A
  hgvsp: ENSP00000359680.4:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.85G>A
  hgvsp: ENSP00000359681.4:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.466G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.85G>A
  hgvsp: ENSP00000359683.3:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2414
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu29Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-99344548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344548
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344548
    reference: chr 10
allele count: 10
allele frequency: 8.270614506657845e-5
allele num: 120910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.88G>A
  hgvsp: ENSP00000359681.4:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.88G>A
  hgvsp: ENSP00000452243.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.88G>A
  hgvsp: ENSP00000359680.4:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.88G>A
  hgvsp: ENSP00000359683.3:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.469G>A
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly30Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

10-99344549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344549
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344549
    reference: chr 10
allele count: 2
allele frequency: 1.65404082172748e-5
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.89G>A
  hgvsp: ENSP00000359680.4:p.Gly30Glu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.89G>A
  hgvsp: ENSP00000452243.1:p.Gly30Glu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.89G>A
  hgvsp: ENSP00000359681.4:p.Gly30Glu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.470G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.89G>A
  hgvsp: ENSP00000359683.3:p.Gly30Glu
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly30Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

10-99344549-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344549
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344549
    reference: chr 10
allele count: 3
allele frequency: 2.481061232591221e-5
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.470G>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.89G>T
  hgvsp: ENSP00000452243.1:p.Gly30Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.89G>T
  hgvsp: ENSP00000359681.4:p.Gly30Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.89G>T
  hgvsp: ENSP00000359683.3:p.Gly30Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.89G>T
  hgvsp: ENSP00000359680.4:p.Gly30Val
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly30Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-99344549-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344549
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344546
    reference: chr 10
allele count: 11
allele frequency: 9.097224519501141e-5
allele num: 120916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.94_96delAAG
  hgvsp: ENSP00000452243.1:p.Lys32del
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.94_96delAAG
  hgvsp: ENSP00000359681.4:p.Lys32del
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.475_477delAAG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.94_96delAAG
  hgvsp: ENSP00000359683.3:p.Lys32del
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.94_96delAAG
  hgvsp: ENSP00000359680.4:p.Lys32del
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys32del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: GGAA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

10-99344559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344559
    reference: chr 10
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.99G>A
  hgvsp: ENST00000370647.4:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.480G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.99G>A
  hgvsp: ENST00000370649.3:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.99G>A
  hgvsp: ENST00000555577.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.99G>A
  hgvsp: ENST00000370646.4:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val33Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

10-99344561-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344561
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344561
    reference: chr 10
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.101A>G
  hgvsp: ENSP00000452243.1:p.Asp34Gly
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.482A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.101A>G
  hgvsp: ENSP00000359680.4:p.Asp34Gly
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.101A>G
  hgvsp: ENSP00000359683.3:p.Asp34Gly
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.101A>G
  hgvsp: ENSP00000359681.4:p.Asp34Gly
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp34Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-99344563-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344563
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344563
    reference: chr 10
allele count: 3
allele frequency: 2.476064707824365e-5
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.484A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.103A>G
  hgvsp: ENSP00000452243.1:p.Ile35Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.103A>G
  hgvsp: ENSP00000359681.4:p.Ile35Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.103A>G
  hgvsp: ENSP00000359680.4:p.Ile35Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.103A>G
  hgvsp: ENSP00000359683.3:p.Ile35Val
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8693
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile35Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

10-99344566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344566
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344566
    reference: chr 10
allele count: 3
allele frequency: 2.476023835856127e-5
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.106G>A
  hgvsp: ENSP00000359680.4:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.106G>A
  hgvsp: ENSP00000359681.4:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.487G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.106G>A
  hgvsp: ENSP00000452243.1:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.106G>A
  hgvsp: ENSP00000359683.3:p.Ala36Thr
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala36Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

10-99344566-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344566
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344566
    reference: chr 10
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.106G>T
  hgvsp: ENSP00000359683.3:p.Ala36Ser
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.106G>T
  hgvsp: ENSP00000452243.1:p.Ala36Ser
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.106G>T
  hgvsp: ENSP00000359680.4:p.Ala36Ser
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.106G>T
  hgvsp: ENSP00000359681.4:p.Ala36Ser
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.487G>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala36Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/10-99344567-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344567
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344567
    reference: chr 10
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.488C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.107C>A
  hgvsp: ENSP00000359681.4:p.Ala36Glu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.107C>A
  hgvsp: ENSP00000359680.4:p.Ala36Glu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.107C>A
  hgvsp: ENSP00000452243.1:p.Ala36Glu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.107C>A
  hgvsp: ENSP00000359683.3:p.Ala36Glu
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala36Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-99344567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344567
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344567
    reference: chr 10
allele count: 18
allele frequency: 1.485540736828205e-4
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.107C>T
  hgvsp: ENSP00000359681.4:p.Ala36Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.488C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.107C>T
  hgvsp: ENSP00000359680.4:p.Ala36Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.107C>T
  hgvsp: ENSP00000359683.3:p.Ala36Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.107C>T
  hgvsp: ENSP00000452243.1:p.Ala36Val
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29965
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala36Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

10-99344568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344568
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344568
    reference: chr 10
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.108G>A
  hgvsp: ENST00000370649.3:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.108G>A
  hgvsp: ENST00000555577.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.489G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.108G>A
  hgvsp: ENST00000370647.4:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.108G>A
  hgvsp: ENST00000370646.4:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42754
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala36Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

10-99344569-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344569
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344569
    reference: chr 10
allele count: 3
allele frequency: 2.475451769948015e-5
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.109G>C
  hgvsp: ENSP00000359681.4:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.109G>C
  hgvsp: ENSP00000452243.1:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.490G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.109G>C
  hgvsp: ENSP00000359683.3:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.109G>C
  hgvsp: ENSP00000359680.4:p.Gly37Arg
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly37Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-99344570-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344570
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344570
    reference: chr 10
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.110G>T
  hgvsp: ENSP00000359680.4:p.Gly37Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.110G>T
  hgvsp: ENSP00000452243.1:p.Gly37Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.110G>T
  hgvsp: ENSP00000359683.3:p.Gly37Val
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.110G>T
  hgvsp: ENSP00000359681.4:p.Gly37Val
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.491G>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly37Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/10-99344577-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344577
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344577
    reference: chr 10
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.117C>A
  hgvsp: ENSP00000452243.1:p.Tyr39Ter
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.498C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.117C>A
  hgvsp: ENSP00000359680.4:p.Tyr39Ter
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.117C>A
  hgvsp: ENSP00000359683.3:p.Tyr39Ter
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.117C>A
  hgvsp: ENSP00000359681.4:p.Tyr39Ter
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr39Ter
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

10-99344589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344589
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344589
    reference: chr 10
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.510C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.129C>T
  hgvsp: ENST00000555577.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.129C>T
  hgvsp: ENST00000370649.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.129C>T
  hgvsp: ENST00000370646.4:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.129C>T
  hgvsp: ENST00000370647.4:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr43Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

10-99344591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344591
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344591
    reference: chr 10
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.131C>T
  hgvsp: ENSP00000359680.4:p.Thr44Ile
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.131C>T
  hgvsp: ENSP00000452243.1:p.Thr44Ile
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.131C>T
  hgvsp: ENSP00000359681.4:p.Thr44Ile
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.512C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.131C>T
  hgvsp: ENSP00000359683.3:p.Thr44Ile
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr44Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-99344592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344592
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344592
    reference: chr 10
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.513C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.132C>T
  hgvsp: ENST00000555577.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.132C>T
  hgvsp: ENST00000370646.4:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.132C>T
  hgvsp: ENST00000370647.4:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.132C>T
  hgvsp: ENST00000370649.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr44Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

10-99344594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344594
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344594
    reference: chr 10
allele count: 17
allele frequency: 1.401946231238661e-4
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.134C>T
  hgvsp: ENSP00000359683.3:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.134C>T
  hgvsp: ENSP00000452243.1:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.134C>T
  hgvsp: ENSP00000359680.4:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.515C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.134C>T
  hgvsp: ENSP00000359681.4:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42900
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro45Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

10-99344628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344628
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344628
    reference: chr 10
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.168A>G
  hgvsp: ENST00000370647.4:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.168A>G
  hgvsp: ENST00000555577.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.168A>G
  hgvsp: ENST00000370649.3:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.168A>G
  hgvsp: ENST00000370646.4:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.549A>G
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys56Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

10-99344645-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344645
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344645
    reference: chr 10
allele count: 38
allele frequency: 3.143509480162801e-4
allele num: 120884
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.185A>T
  hgvsp: ENSP00000359683.3:p.His62Leu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.185A>T
  hgvsp: ENSP00000452243.1:p.His62Leu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.185A>T
  hgvsp: ENSP00000359681.4:p.His62Leu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.566A>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.185A>T
  hgvsp: ENSP00000359680.4:p.His62Leu
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13237
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29893
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 9.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His62Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

10-99344652-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344652
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344652
    reference: chr 10
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.192G>T
  hgvsp: ENST00000370646.4:c.192G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.192G>T
  hgvsp: ENST00000555577.1:c.192G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.192G>T
  hgvsp: ENST00000370649.3:c.192G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.573G>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.192G>T
  hgvsp: ENST00000370647.4:c.192G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu64Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/10-99344661-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344661
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344661
    reference: chr 10
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.201C>A
  hgvsp: ENSP00000359681.4:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.201C>A
  hgvsp: ENSP00000452243.1:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.582C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.201C>A
  hgvsp: ENSP00000359680.4:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.201C>A
  hgvsp: ENSP00000359683.3:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 172
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe67Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

10-99344668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344668
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344668
    reference: chr 10
allele count: 3
allele frequency: 2.507606406098499e-5
allele num: 119636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.208C>T
  hgvsp: ENSP00000452243.1:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.208C>T
  hgvsp: ENSP00000359680.4:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.208C>T
  hgvsp: ENSP00000359683.3:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.589C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.208C>T
  hgvsp: ENSP00000359681.4:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 8196
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 350
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genotype quality: GenotypeQuality
  all individuals: 40926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 48
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genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg70Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

10-99344669-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344669
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344669
    reference: chr 10
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: C
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.209G>C
  hgvsp: ENSP00000359680.4:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.209G>C
  hgvsp: ENSP00000452243.1:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.590G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.209G>C
  hgvsp: ENSP00000359683.3:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.209G>C
  hgvsp: ENSP00000359681.4:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg70Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

10-99344676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344676
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344676
    reference: chr 10
allele count: 1
allele frequency: 8.414108777598277e-6
allele num: 118848
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5G>A
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
hgvs: c.211+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

10-99344685-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344685
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344685
    reference: chr 10
allele count: 5
allele frequency: 4.249604786754832e-5
allele num: 117658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+14T>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+14T>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+14T>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+14T>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+14T>G
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

10-99344686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344686
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344686
    reference: chr 10
allele count: 2
allele frequency: 1.702330490441414e-5
allele num: 117486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+15C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+15C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+15C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+15C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+15C>T
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24962
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

10-99344691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344691
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344691
    reference: chr 10
allele count: 1
allele frequency: 8.565603960735272e-6
allele num: 116746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+20G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+20G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+20G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+20G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+20G>A
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

10-99344696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344696
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344696
    reference: chr 10
allele count: 1
allele frequency: 8.615045315138358e-6
allele num: 116076
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+25A>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+25A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+25A>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+25A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+25A>G
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

10-99344698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344698
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344698
    reference: chr 10
allele count: 1
allele frequency: 8.637070305752289e-6
allele num: 115780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+27C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+27C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+27C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+27C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+27C>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27079
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

10-99344699-TGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344699
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344696
    reference: chr 10
allele count: 2
allele frequency: 1.732021615629763e-5
allele num: 115472
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+30_211+32delGGG
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+30_592+32delGGG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+30_211+32delGGG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+30_211+32delGGG
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+30_211+32delGGG
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11511
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: TGGG
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

10-99344700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344700
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344700
    reference: chr 10
allele count: 61
allele frequency: 5.286419967068203e-4
allele num: 115390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+29G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+29G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+29G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+29G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+29G>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11565
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17701
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8110
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-99344704-A-AGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99344704
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99344706
    reference: chr 10
allele count: 2
allele frequency: 1.738495505989117e-5
allele num: 115042
alternate allele: AGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+34_211+35insTG
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+34_211+35insTG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+34_211+35insTG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+34_592+35insTG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+34_211+35insTG
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

10-99349604-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349604
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349604
    reference: chr 10
allele count: 5
allele frequency: 4.384657207499518e-5
allele num: 114034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4933T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-51T>C
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4933T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4933T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4933T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4933T>C
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21448
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

10-99349610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349610
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349610
    reference: chr 10
allele count: 1
allele frequency: 8.763627440670242e-6
allele num: 114108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4939A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4939A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4939A>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4939A>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-45A>G
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4939A>G
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

10-99349621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349621
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349621
    reference: chr 10
allele count: 6
allele frequency: 5.245122036506049e-5
allele num: 114392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4950G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4950G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4950G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-34G>A
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4950G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4950G>A
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3632
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21436
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

10-99349623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349623
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349623
    reference: chr 10
allele count: 2
allele frequency: 1.746236859567632e-5
allele num: 114532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4952G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4952G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-32G>A
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4952G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4952G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4952G>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3632
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/10-99349629-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349629
    reference: chr 10
allele count: 1
allele frequency: 8.707767328456984e-6
allele num: 114840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-26C>A
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4958C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4958C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4958C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4958C>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4958C>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 12046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

10-99349651-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349651
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349651
    reference: chr 10
allele count: 1
allele frequency: 8.498198381943028e-6
allele num: 117672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4980T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4980T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4980T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4980T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.-4T>C
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4980T>C
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4117
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 36
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genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS

10-99349657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349657
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349657
    reference: chr 10
allele count: 2
allele frequency: 1.685715248980142e-5
allele num: 118644
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.3G>A
  hgvsp: ENSP00000359674.3:p.Met1?
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+4986G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+4986G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+4986G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+4986G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+4986G>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21434
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14559
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

10-99349671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349671
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349671
    reference: chr 10
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5000G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.17G>A
  hgvsp: ENSP00000359674.3:p.Arg6Lys
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5000G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5000G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5000G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5000G>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg6Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/10-99349672-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349672
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349672
    reference: chr 10
allele count: 1
allele frequency: 8.309098462816784e-6
allele num: 120350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5001A>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5001A>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5001A>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5001A>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5001A>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.18A>C
  hgvsp: ENSP00000359674.3:p.Arg6Ser
  variant of: http://identifiers.org/hgnc/23294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21437
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg6Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

10-99349674-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349674
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349671
    reference: chr 10
allele count: 9
allele frequency: 7.467020658757155e-5
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5007_211+5009delGAG
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5007_211+5009delGAG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5007_211+5009delGAG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.24_26delGAG
  hgvsp: ENSP00000359674.3:p.Arg10del
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5007_592+5009delGAG
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5007_211+5009delGAG
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21439
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg10del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AGAG
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-99349678-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349678
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349678
    reference: chr 10
allele count: 2
allele frequency: 1.657138122462507e-5
allele num: 120690
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5007G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5007G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5007G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5007G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.24G>C
  hgvsp: ENSP00000359674.3:p.Arg8Ser
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5007G>C
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15824
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg8Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

10-99349680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349680
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349680
    reference: chr 10
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5009G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5009G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5009G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5009G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5009G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.26G>A
  hgvsp: ENSP00000359674.3:p.Arg9Lys
  variant of: http://identifiers.org/hgnc/23294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21434
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg9Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

10-99349683-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349683
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349683
    reference: chr 10
allele count: 10
allele frequency: 8.271435424903638e-5
allele num: 120898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5012G>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5012G>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.29G>T
  hgvsp: ENSP00000359674.3:p.Arg10Ile
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5012G>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5012G>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5012G>T
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21438
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg10Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

10-99349709-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349709
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349709
    reference: chr 10
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.55G>C
  hgvsp: ENSP00000359674.3:p.Asp19His
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5038G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5038G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5038G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5038G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5038G>C
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4279
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp19His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-99349717-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349717
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349717
    reference: chr 10
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5046C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5046C>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5046C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.63C>A
  hgvsp: ENSP00000359674.3:p.Asp21Glu
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5046C>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5046C>A
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp21Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

10-99349717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349717
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349717
    reference: chr 10
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5046C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5046C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5046C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5046C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.63C>T
  hgvsp: ENST00000370640.3:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5046C>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10781
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp21Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-99349722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349722
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349722
    reference: chr 10
allele count: 3
allele frequency: 2.474634991338777e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5051C>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.68C>G
  hgvsp: ENSP00000359674.3:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5051C>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5051C>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5051C>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5051C>G
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21441
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser23Ter
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-99349734-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349734
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349734
    reference: chr 10
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5063A>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5063A>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5063A>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.80A>T
  hgvsp: ENSP00000359674.3:p.His27Leu
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5063A>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5063A>T
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His27Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

10-99349735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349735
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349735
    reference: chr 10
allele count: 2
allele frequency: 1.649838315845047e-5
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5064T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5064T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5064T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5064T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.81T>C
  hgvsp: ENST00000370640.3:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5064T>C
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21432
  bin: 9.75e1
  variant carriers: 2
hgvs: p.His27His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

10-99349739-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349739
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349739
    reference: chr 10
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.85G>C
  hgvsp: ENSP00000359674.3:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5068G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5068G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5068G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5068G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5068G>C
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6062
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21427
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala29Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-99349747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349747
    reference: chr 10
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5076T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.93T>C
  hgvsp: ENST00000370640.3:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5076T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5076T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5076T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5076T>C
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6045
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn31Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

10-99349752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349752
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349752
    reference: chr 10
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5081G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.98G>C
  hgvsp: ENSP00000359674.3:p.Ser33Thr
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5081G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5081G>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5081G>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5081G>C
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser33Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

10-99349771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349771
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349771
    reference: chr 10
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5100T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5100T>C
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.117T>C
  hgvsp: ENST00000370640.3:c.117T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5100T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5100T>C
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5100T>C
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21389
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe39Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

10-99349775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349775
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349775
    reference: chr 10
allele count: 3
allele frequency: 2.475084152861197e-5
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5104C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.121C>T
  hgvsp: ENSP00000359674.3:p.Arg41Cys
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5104C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5104C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5104C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5104C>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg41Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

10-99349776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349776
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349776
    reference: chr 10
allele count: 6
allele frequency: 4.950331672222039e-5
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5105G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.122G>A
  hgvsp: ENSP00000359674.3:p.Arg41His
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5105G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5105G>A
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5105G>A
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5105G>A
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21381
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Arg41His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-99349780-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349780
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349780
    reference: chr 10
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.126T>G
  hgvsp: ENST00000370640.3:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5109T>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5109T>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5109T>G
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5109T>G
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5109T>G
  variant of: http://identifiers.org/hgnc/30031
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu42Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

10-99349783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99349783
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99349783
    reference: chr 10
allele count: 243
allele frequency: 2.00501666721674e-3
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000203942
  ensembl protein: ENSP00000359674
  ensembl transcript: ENST00000370640
  gene symbol: C10orf62
  hgvsc: ENST00000370640.3:c.129C>T
  hgvsp: ENST00000370640.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000249967
  ensembl protein: ENSP00000359683
  ensembl transcript: ENST00000370649
  gene symbol: PI4K2A
  hgvsc: ENST00000370649.3:c.211+5112C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl transcript: ENST00000465608
  gene symbol: HOGA1
  hgvsc: ENST00000465608.1:n.592+5112C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155252
  ensembl protein: ENSP00000452243
  ensembl transcript: ENST00000555577
  gene symbol: PI4K2A
  hgvsc: ENST00000555577.1:c.211+5112C>T
  variant of: http://identifiers.org/hgnc/30031
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359681
  ensembl transcript: ENST00000370647
  gene symbol: HOGA1
  hgvsc: ENST00000370647.4:c.211+5112C>T
  variant of: http://identifiers.org/hgnc/25155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000241935
  ensembl protein: ENSP00000359680
  ensembl transcript: ENST00000370646
  gene symbol: HOGA1
  hgvsc: ENST00000370646.4:c.211+5112C>T
  variant of: http://identifiers.org/hgnc/25155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10361
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser43Ser
num of homozygotes: 3
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-118402584-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402584
    reference: chr 11
allele count: 1
allele frequency: 4.900999803960008e-5
allele num: 20404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.68C>G
  hgvsp: ENSP00000431205.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000524522
  gene symbol: TMEM25
  hgvsc: ENST00000524522.1:n.668C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533627
  gene symbol: TMEM25
  hgvsc: ENST00000533627.1:n.128C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432062
  ensembl transcript: ENST00000534181
  gene symbol: TMEM25
  hgvsc: ENST00000534181.1:c.68C>G
  hgvsp: ENSP00000432062.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.297C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000527785
  gene symbol: TMEM25
  hgvsc: ENST00000527785.1:n.678C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533587
  gene symbol: TMEM25
  hgvsc: ENST00000533587.1:n.125C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431548
  ensembl transcript: ENST00000533102
  gene symbol: TMEM25
  hgvsc: ENST00000533102.1:c.68C>G
  hgvsp: ENSP00000431548.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000416071
  ensembl transcript: ENST00000442938
  gene symbol: TMEM25
  hgvsc: ENST00000442938.2:c.68C>G
  hgvsp: ENSP00000416071.2:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.68C>G
  hgvsp: ENSP00000346237.4:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.68C>G
  hgvsp: ENSP00000431663.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000439408
  ensembl transcript: ENST00000544878
  gene symbol: TMEM25
  hgvsc: ENST00000544878.1:c.68C>G
  hgvsp: ENSP00000439408.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+36C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.68C>G
  hgvsp: ENSP00000433906.1:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000532749
  gene symbol: TMEM25
  hgvsc: ENST00000532749.1:n.151C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.128C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.155C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.68C>G
  hgvsp: ENSP00000352924.4:p.Ser23Ter
  variant of: http://identifiers.org/hgnc/25890
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser23Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

11-118402595-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402595
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402594
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 20450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.183delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000411882
  ensembl transcript: ENST00000411589
  gene symbol: TMEM25
  hgvsc: ENST00000411589.2:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529176
  gene symbol: TMEM25
  hgvsc: ENST00000529176.1:n.140delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+48delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000524522
  gene symbol: TMEM25
  hgvsc: ENST00000524522.1:n.680delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000416071
  ensembl transcript: ENST00000442938
  gene symbol: TMEM25
  hgvsc: ENST00000442938.2:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.167delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533627
  gene symbol: TMEM25
  hgvsc: ENST00000533627.1:n.130+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432040
  ensembl transcript: ENST00000528373
  gene symbol: TMEM25
  hgvsc: ENST00000528373.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.309delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000435446
  ensembl transcript: ENST00000527267
  gene symbol: TMEM25
  hgvsc: ENST00000527267.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525298
  gene symbol: TMEM25
  hgvsc: ENST00000525298.1:n.129+10delT
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433059
  ensembl transcript: ENST00000526973
  gene symbol: TMEM25
  hgvsc: ENST00000526973.1:c.33+647delT
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

11-118402614-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402614
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402614
    reference: chr 11
allele count: 5
allele frequency: 2.45266359266163e-4
allele num: 20386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000435446
  ensembl transcript: ENST00000527267
  gene symbol: TMEM25
  hgvsc: ENST00000527267.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000416071
  ensembl transcript: ENST00000442938
  gene symbol: TMEM25
  hgvsc: ENST00000442938.2:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.185G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529001
  gene symbol: TMEM25
  hgvsc: ENST00000529001.1:n.130+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.130+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431548
  ensembl transcript: ENST00000533102
  gene symbol: TMEM25
  hgvsc: ENST00000533102.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+66G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.327G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525298
  gene symbol: TMEM25
  hgvsc: ENST00000525298.1:n.129+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432040
  ensembl transcript: ENST00000528373
  gene symbol: TMEM25
  hgvsc: ENST00000528373.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000532749
  gene symbol: TMEM25
  hgvsc: ENST00000532749.1:n.153+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000411882
  ensembl transcript: ENST00000411589
  gene symbol: TMEM25
  hgvsc: ENST00000411589.2:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.201G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432062
  ensembl transcript: ENST00000534181
  gene symbol: TMEM25
  hgvsc: ENST00000534181.1:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+28G>C
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/11-118402617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402617
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402617
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 20370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.330C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+69C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.188C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.130+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000416071
  ensembl transcript: ENST00000442938
  gene symbol: TMEM25
  hgvsc: ENST00000442938.2:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533587
  gene symbol: TMEM25
  hgvsc: ENST00000533587.1:n.127+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433059
  ensembl transcript: ENST00000526973
  gene symbol: TMEM25
  hgvsc: ENST00000526973.1:c.33+668C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000527785
  gene symbol: TMEM25
  hgvsc: ENST00000527785.1:n.680+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525298
  gene symbol: TMEM25
  hgvsc: ENST00000525298.1:n.129+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000411882
  ensembl transcript: ENST00000411589
  gene symbol: TMEM25
  hgvsc: ENST00000411589.2:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000315635
  ensembl transcript: ENST00000313236
  gene symbol: TMEM25
  hgvsc: ENST00000313236.5:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000439408
  ensembl transcript: ENST00000544878
  gene symbol: TMEM25
  hgvsc: ENST00000544878.1:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.204C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.70+31C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529176
  gene symbol: TMEM25
  hgvsc: ENST00000529176.1:n.161C>A
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

11-118402622-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402622
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402622
    reference: chr 11
allele count: 1
allele frequency: 4.921259842519685e-5
allele num: 20320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000416071
  ensembl transcript: ENST00000442938
  gene symbol: TMEM25
  hgvsc: ENST00000442938.2:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533627
  gene symbol: TMEM25
  hgvsc: ENST00000533627.1:n.130+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.209G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529001
  gene symbol: TMEM25
  hgvsc: ENST00000529001.1:n.130+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529176
  gene symbol: TMEM25
  hgvsc: ENST00000529176.1:n.166G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000411882
  ensembl transcript: ENST00000411589
  gene symbol: TMEM25
  hgvsc: ENST00000411589.2:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.193G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.130+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433059
  ensembl transcript: ENST00000526973
  gene symbol: TMEM25
  hgvsc: ENST00000526973.1:c.33+673G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.335G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000435446
  ensembl transcript: ENST00000527267
  gene symbol: TMEM25
  hgvsc: ENST00000527267.1:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000524522
  gene symbol: TMEM25
  hgvsc: ENST00000524522.1:n.706G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000315635
  ensembl transcript: ENST00000313236
  gene symbol: TMEM25
  hgvsc: ENST00000313236.5:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+36G>A
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-118402625-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402625
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402625
    reference: chr 11
allele count: 107
allele frequency: 5.257468553459119e-3
allele num: 20352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525298
  gene symbol: TMEM25
  hgvsc: ENST00000525298.1:n.129+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432040
  ensembl transcript: ENST00000528373
  gene symbol: TMEM25
  hgvsc: ENST00000528373.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431663
  ensembl transcript: ENST00000525118
  gene symbol: TMEM25
  hgvsc: ENST00000525118.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000532749
  gene symbol: TMEM25
  hgvsc: ENST00000532749.1:n.153+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+77T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431548
  ensembl transcript: ENST00000533102
  gene symbol: TMEM25
  hgvsc: ENST00000533102.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.338T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.212T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533627
  gene symbol: TMEM25
  hgvsc: ENST00000533627.1:n.130+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000524522
  gene symbol: TMEM25
  hgvsc: ENST00000524522.1:n.709T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000527785
  gene symbol: TMEM25
  hgvsc: ENST00000527785.1:n.680+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.196T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432062
  ensembl transcript: ENST00000534181
  gene symbol: TMEM25
  hgvsc: ENST00000534181.1:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529001
  gene symbol: TMEM25
  hgvsc: ENST00000529001.1:n.130+39T>C
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000315635
  ensembl transcript: ENST00000313236
  gene symbol: TMEM25
  hgvsc: ENST00000313236.5:c.70+39T>C
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-118402633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402633
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402633
    reference: chr 11
allele count: 331
allele frequency: 1.646438519697573e-2
allele num: 20104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.346C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525298
  gene symbol: TMEM25
  hgvsc: ENST00000525298.1:n.129+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432062
  ensembl transcript: ENST00000534181
  gene symbol: TMEM25
  hgvsc: ENST00000534181.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+85C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000411882
  ensembl transcript: ENST00000411589
  gene symbol: TMEM25
  hgvsc: ENST00000411589.2:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000532749
  gene symbol: TMEM25
  hgvsc: ENST00000532749.1:n.153+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432040
  ensembl transcript: ENST00000528373
  gene symbol: TMEM25
  hgvsc: ENST00000528373.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000439408
  ensembl transcript: ENST00000544878
  gene symbol: TMEM25
  hgvsc: ENST00000544878.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.220C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000435446
  ensembl transcript: ENST00000527267
  gene symbol: TMEM25
  hgvsc: ENST00000527267.1:c.70+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529001
  gene symbol: TMEM25
  hgvsc: ENST00000529001.1:n.130+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.204C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529176
  gene symbol: TMEM25
  hgvsc: ENST00000529176.1:n.177C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000524522
  gene symbol: TMEM25
  hgvsc: ENST00000524522.1:n.717C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.130+47C>A
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000527785
  gene symbol: TMEM25
  hgvsc: ENST00000527785.1:n.680+47C>A
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 6
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

11-118402635-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 118402635
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 118402635
    reference: chr 11
allele count: 1
allele frequency: 4.971167230065619e-5
allele num: 20116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000528934
  gene symbol: TMEM25
  hgvsc: ENST00000528934.1:n.91+87C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431205
  ensembl transcript: ENST00000524725
  gene symbol: TMEM25
  hgvsc: ENST00000524725.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000315635
  ensembl transcript: ENST00000313236
  gene symbol: TMEM25
  hgvsc: ENST00000313236.5:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000432062
  ensembl transcript: ENST00000534181
  gene symbol: TMEM25
  hgvsc: ENST00000534181.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000439408
  ensembl transcript: ENST00000544878
  gene symbol: TMEM25
  hgvsc: ENST00000544878.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000531494
  gene symbol: TMEM25
  hgvsc: ENST00000531494.1:n.348C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000527785
  gene symbol: TMEM25
  hgvsc: ENST00000527785.1:n.680+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433938
  ensembl transcript: ENST00000533137
  gene symbol: TMEM25
  hgvsc: ENST00000533137.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533587
  gene symbol: TMEM25
  hgvsc: ENST00000533587.1:n.127+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000525129
  gene symbol: TMEM25
  hgvsc: ENST00000525129.1:n.222C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000533627
  gene symbol: TMEM25
  hgvsc: ENST00000533627.1:n.130+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000436746
  ensembl transcript: ENST00000533689
  gene symbol: TMEM25
  hgvsc: ENST00000533689.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000431548
  ensembl transcript: ENST00000533102
  gene symbol: TMEM25
  hgvsc: ENST00000533102.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000433906
  ensembl transcript: ENST00000532762
  gene symbol: TMEM25
  hgvsc: ENST00000532762.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000278959
  ensembl transcript: ENST00000354064
  gene symbol: TMEM25
  hgvsc: ENST00000354064.7:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000526941
  gene symbol: TMEM25
  hgvsc: ENST00000526941.1:n.206C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000529001
  gene symbol: TMEM25
  hgvsc: ENST00000529001.1:n.130+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000352924
  ensembl transcript: ENST00000359862
  gene symbol: TMEM25
  hgvsc: ENST00000359862.4:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl transcript: ENST00000530423
  gene symbol: TMEM25
  hgvsc: ENST00000530423.1:n.130+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000346237
  ensembl transcript: ENST00000354284
  gene symbol: TMEM25
  hgvsc: ENST00000354284.4:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149582
  ensembl protein: ENSP00000435446
  ensembl transcript: ENST00000527267
  gene symbol: TMEM25
  hgvsc: ENST00000527267.1:c.70+49C>G
  variant of: http://identifiers.org/hgnc/25890
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

DP
type: SiteQuality
SIO_000300: 1.707249e6

FS
type: SiteQuality
SIO_000300: 1.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.796e0

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeQuality
all individuals: 473
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8639
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.474328838302611e-4
allele num: 16166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.708495e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.225e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.206e0

GenotypeQuality
all individuals: 42401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.15606936416185e-3
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 1.709189e6

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.556e0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
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SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.708361e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.50558692779046e-5
allele num: 66584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.708361e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.556e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

East Asian
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allele count: 11
allele frequency: 1.271676300578035e-3
allele num: 8650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.708361e6

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: -1.556e0

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
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SIO_000300: 1.709781e6

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.71007e6

QD
type: SiteQuality
SIO_000300: 1.404e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.74e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.710238e6

FS
type: SiteQuality
SIO_000300: 1.228e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.798e0

FS
type: SiteQuality
SIO_000300: 1.134e0

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.710096e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.46e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.400600150037509e-4
allele num: 66650
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele num: 904
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.25e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500105007350515e-5
allele num: 66662
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Other
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East Asian
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South Asian
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allele num: 16384
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.709209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 5.155e0

QD
type: SiteQuality
SIO_000300: 1.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

GenotypeQuality
all individuals: 2547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.281e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.511e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.709005e6

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.975e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.787e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 1.0185e1

DP
type: SiteQuality
SIO_000300: 1.70952e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 1267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8688
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.709651e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.709477e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

FS
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.34e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.689e0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.078e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.709357e6

QD
type: SiteQuality
SIO_000300: 1.215e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.512e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.586e0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8692
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.034189074096605e-3
allele num: 16438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 1.709493e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

FS
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.174e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 2538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 540
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GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.724e1

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

FS
type: SiteQuality
SIO_000300: 5.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.70632e6

GenotypeQuality
all individuals: 8608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42549
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 535
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GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.565918526987183e-4
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.701671e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.696833e6

FS
type: SiteQuality
SIO_000300: 1.237e0

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.317e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.956e0

MQRankSum
type: SiteQuality
SIO_000300: -1.753e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2344
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GenotypeQuality
all individuals: 2426
bin: 7.75e1
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GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.68104e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.821e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 9.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518233990222573e-5
allele num: 65866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231678778174652e-4
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.844e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.659225e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 1.3232e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52031135976648e-5
allele num: 65776
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.862e0

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.563e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.504e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.649702e6

GenotypeQuality
all individuals: 2779
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65444
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.791981712678038e-5
allele num: 11374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.38e1

VQSLOD
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
SIO_000300: 1.615309e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.723e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 1025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1983
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.722246246988324e-5
allele num: 64748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

DP
type: SiteQuality
SIO_000300: 1.537268e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.250312578144536e-4
allele num: 15996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.52626e6

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

QD
type: SiteQuality
SIO_000300: 1.004e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.672e0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.195600191296031e-4
allele num: 8364
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.453521e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.546e0

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
all individuals: 714
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037990450487856e-4
allele num: 9634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

MQRankSum
type: SiteQuality
SIO_000300: -1.251e0

VQSLOD
type: SiteQuality
SIO_000300: -1.253e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.099e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.394644e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1698
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.051412020275162e-5
allele num: 11048
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.855e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 1.2579e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.379652e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 896
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10996
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573366059347368e-5
allele num: 63558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044277360066834e-4
allele num: 9576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.352498e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.2918e1

MQ
type: SiteQuality
SIO_000300: 5.096e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5107
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 9.288705563777197e-4
allele num: 63518
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.555209953343701e-4
allele num: 6430
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15784
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African
type: Population
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allele frequency: 1.044277360066834e-4
allele num: 9576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.350108e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 1399
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.049979000419992e-4
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578980610118108e-5
allele num: 63332
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.444e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

DP
type: SiteQuality
SIO_000300: 1.314908e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 302
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GenotypeQuality
all individuals: 10859
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.719384919409622e-5
allele num: 64772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 2.273589e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2299
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54354335813293e-5
allele num: 64786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.7e-1

FS
type: SiteQuality
SIO_000300: 7.111e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 2.275023e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2297
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.973500697350069e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.182e0

DP
type: SiteQuality
SIO_000300: 2.281366e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.152e0

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.082044011588486e-5
allele num: 64892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 2.282002e6

FS
type: SiteQuality
SIO_000300: 8.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e0

QD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.308408109006314e-5
allele num: 12036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.89e0

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.743e0

VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.905e0

DP
type: SiteQuality
SIO_000300: 2.287368e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 2.317489e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.126e1

FS
type: SiteQuality
SIO_000300: 4.684e0

GenotypeQuality
all individuals: 2968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.364070386031919e-4
allele num: 14662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 1.245e0

DP
type: SiteQuality
SIO_000300: 2.32781e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.191e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 21435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

FS
type: SiteQuality
SIO_000300: 1.657e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

DP
type: SiteQuality
SIO_000300: 2.346061e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.413e0

QD
type: SiteQuality
SIO_000300: 7.29e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5977
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.28693574751666e-5
allele num: 15906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.347264e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.683905827865689e-4
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 1.147e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 2.3495e6

QD
type: SiteQuality
SIO_000300: 1.503e1

MQ
type: SiteQuality
SIO_000300: 5.835e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21431
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009872381411028e-5
allele num: 66448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 2.351882e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 3.417e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 3724
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.748e0

VQSLOD
type: SiteQuality
SIO_000300: -2.069e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.286e1

MQRankSum
type: SiteQuality
SIO_000300: -1.304e0

DP
type: SiteQuality
SIO_000300: 2.352394e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6043
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 9.648784253184099e-4
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 1.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 2.354006e6

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 21440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.81e-1

DP
type: SiteQuality
SIO_000300: 2.358383e6

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21441
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.936e0

FS
type: SiteQuality
SIO_000300: 6.36e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.35858e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 2.35858e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.936e0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

DP
type: SiteQuality
SIO_000300: 2.358174e6

QD
type: SiteQuality
SIO_000300: 1.44e1

FS
type: SiteQuality
SIO_000300: 1.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

GenotypeQuality
all individuals: 3744
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 2.356074e6

FS
type: SiteQuality
SIO_000300: 8.032999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.584e0

VQSLOD
type: SiteQuality
SIO_000300: -7.572e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 4278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 2.016e0

QD
type: SiteQuality
SIO_000300: 1.654e1

DP
type: SiteQuality
SIO_000300: 2.355855e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

FS
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 2.355125e6

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3733
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

FS
type: SiteQuality
SIO_000300: 2.277e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.35353e6

GenotypeQuality
all individuals: 2337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21420
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

FS
type: SiteQuality
SIO_000300: 6.438e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.427e0

DP
type: SiteQuality
SIO_000300: 2.352528e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.48e-2

GenotypeQuality
all individuals: 4242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.147e0

DP
type: SiteQuality
SIO_000300: 2.34803e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.301e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 8.803000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -9.16e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21382
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 6.829e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

DP
type: SiteQuality
SIO_000300: 2.347371e6

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15956
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635041802980734e-4
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 2.347283e6

FS
type: SiteQuality
SIO_000300: 4.602e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

GenotypeQuality
all individuals: 3053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21378
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

QD
type: SiteQuality
SIO_000300: 1.051e1

DP
type: SiteQuality
SIO_000300: 2.346685e6

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.052e0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21497
bin: 9.75e1
variant carriers: 239

African
type: Population
allele count: 5
allele frequency: 4.831851565519907e-4
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.869179600886918e-3
allele num: 902
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 203
allele frequency: 3.046858583736079e-3
allele num: 66626
num of homozygotes: 2

Latino
type: Population
allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 24
allele frequency: 3.629764065335753e-3
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.325e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 2.351693e6

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000435446
ensembl transcript: ENST00000527267
gene symbol: TMEM25
hgvsc: ENST00000527267.1:c.68C>G
hgvsp: ENSP00000435446.1:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000436746
ensembl transcript: ENST00000533689
gene symbol: TMEM25
hgvsc: ENST00000533689.1:c.68C>G
hgvsp: ENSP00000436746.1:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529176
gene symbol: TMEM25
hgvsc: ENST00000529176.1:n.128C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432040
ensembl transcript: ENST00000528373
gene symbol: TMEM25
hgvsc: ENST00000528373.1:c.68C>G
hgvsp: ENSP00000432040.1:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433938
ensembl transcript: ENST00000533137
gene symbol: TMEM25
hgvsc: ENST00000533137.1:c.68C>G
hgvsp: ENSP00000433938.1:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000411882
ensembl transcript: ENST00000411589
gene symbol: TMEM25
hgvsc: ENST00000411589.2:c.68C>G
hgvsp: ENSP00000411882.2:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000525298
gene symbol: TMEM25
hgvsc: ENST00000525298.1:n.127C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529001
gene symbol: TMEM25
hgvsc: ENST00000529001.1:n.128C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433059
ensembl transcript: ENST00000526973
gene symbol: TMEM25
hgvsc: ENST00000526973.1:c.33+635C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: true
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000315635
ensembl transcript: ENST00000313236
gene symbol: TMEM25
hgvsc: ENST00000313236.5:c.68C>G
hgvsp: ENSP00000315635.5:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: stop_gained
consequence: splice_region_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000278959
ensembl transcript: ENST00000354064
gene symbol: TMEM25
hgvsc: ENST00000354064.7:c.68C>G
hgvsp: ENSP00000278959.8:p.Ser23Ter
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000525129
gene symbol: TMEM25
hgvsc: ENST00000525129.1:n.171C>G
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 1326
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2991
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23101
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5868
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20757
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.05393e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 3.419e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.09e-2

QD
type: SiteQuality
SIO_000300: 1.353e1

VQSLOD
type: SiteQuality
SIO_000300: -2.916e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.277e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431548
ensembl transcript: ENST00000533102
gene symbol: TMEM25
hgvsc: ENST00000533102.1:c.70+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432062
ensembl transcript: ENST00000534181
gene symbol: TMEM25
hgvsc: ENST00000534181.1:c.70+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000530423
gene symbol: TMEM25
hgvsc: ENST00000530423.1:n.130+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533587
gene symbol: TMEM25
hgvsc: ENST00000533587.1:n.127+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529001
gene symbol: TMEM25
hgvsc: ENST00000529001.1:n.130+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000439408
ensembl transcript: ENST00000544878
gene symbol: TMEM25
hgvsc: ENST00000544878.1:c.70+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000532749
gene symbol: TMEM25
hgvsc: ENST00000532749.1:n.153+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000527785
gene symbol: TMEM25
hgvsc: ENST00000527785.1:n.680+10delT
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000315635
ensembl transcript: ENST00000313236
gene symbol: TMEM25
hgvsc: ENST00000313236.5:c.70+10delT
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 3059
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5712
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24153
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1543
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 778
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 3.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

DP
type: SiteQuality
SIO_000300: 3.09545e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000524522
gene symbol: TMEM25
hgvsc: ENST00000524522.1:n.698G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529176
gene symbol: TMEM25
hgvsc: ENST00000529176.1:n.158G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533627
gene symbol: TMEM25
hgvsc: ENST00000533627.1:n.130+28G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433059
ensembl transcript: ENST00000526973
gene symbol: TMEM25
hgvsc: ENST00000526973.1:c.33+665G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000439408
ensembl transcript: ENST00000544878
gene symbol: TMEM25
hgvsc: ENST00000544878.1:c.70+28G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533587
gene symbol: TMEM25
hgvsc: ENST00000533587.1:n.127+28G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000436746
ensembl transcript: ENST00000533689
gene symbol: TMEM25
hgvsc: ENST00000533689.1:c.70+28G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000315635
ensembl transcript: ENST00000313236
gene symbol: TMEM25
hgvsc: ENST00000313236.5:c.70+28G>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000527785
gene symbol: TMEM25
hgvsc: ENST00000527785.1:n.680+28G>C
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 2031
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2798
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 769
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4648
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 826
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 908
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25966
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21717
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4190
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.493506493506494e-4
allele num: 7700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.04588e5

FS
type: SiteQuality
SIO_000300: 5.668e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000524522
gene symbol: TMEM25
hgvsc: ENST00000524522.1:n.701C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529001
gene symbol: TMEM25
hgvsc: ENST00000529001.1:n.130+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533627
gene symbol: TMEM25
hgvsc: ENST00000533627.1:n.130+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000435446
ensembl transcript: ENST00000527267
gene symbol: TMEM25
hgvsc: ENST00000527267.1:c.70+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000532749
gene symbol: TMEM25
hgvsc: ENST00000532749.1:n.153+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432040
ensembl transcript: ENST00000528373
gene symbol: TMEM25
hgvsc: ENST00000528373.1:c.70+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431548
ensembl transcript: ENST00000533102
gene symbol: TMEM25
hgvsc: ENST00000533102.1:c.70+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433906
ensembl transcript: ENST00000532762
gene symbol: TMEM25
hgvsc: ENST00000532762.1:c.70+31C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432062
ensembl transcript: ENST00000534181
gene symbol: TMEM25
hgvsc: ENST00000534181.1:c.70+31C>A
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 947
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 735
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 982
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2114
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26312
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4525
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2761
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22122
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 3.04193e5

QD
type: SiteQuality
SIO_000300: 1.473e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.344e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000439408
ensembl transcript: ENST00000544878
gene symbol: TMEM25
hgvsc: ENST00000544878.1:c.70+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533587
gene symbol: TMEM25
hgvsc: ENST00000533587.1:n.127+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432040
ensembl transcript: ENST00000528373
gene symbol: TMEM25
hgvsc: ENST00000528373.1:c.70+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000525298
gene symbol: TMEM25
hgvsc: ENST00000525298.1:n.129+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431548
ensembl transcript: ENST00000533102
gene symbol: TMEM25
hgvsc: ENST00000533102.1:c.70+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000527785
gene symbol: TMEM25
hgvsc: ENST00000527785.1:n.680+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000528934
gene symbol: TMEM25
hgvsc: ENST00000528934.1:n.91+74G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000532749
gene symbol: TMEM25
hgvsc: ENST00000532749.1:n.153+36G>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432062
ensembl transcript: ENST00000534181
gene symbol: TMEM25
hgvsc: ENST00000534181.1:c.70+36G>A
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 1007
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2543
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1544
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26765
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 682
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4165
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.57653791130186e-4
allele num: 2796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.953e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 1.0663e1

DP
type: SiteQuality
SIO_000300: 3.00518e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

VQSLOD
type: SiteQuality
SIO_000300: -2.596e0

QD
type: SiteQuality
SIO_000300: 1.302e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000411882
ensembl transcript: ENST00000411589
gene symbol: TMEM25
hgvsc: ENST00000411589.2:c.70+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433938
ensembl transcript: ENST00000533137
gene symbol: TMEM25
hgvsc: ENST00000533137.1:c.70+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000416071
ensembl transcript: ENST00000442938
gene symbol: TMEM25
hgvsc: ENST00000442938.2:c.70+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529176
gene symbol: TMEM25
hgvsc: ENST00000529176.1:n.169T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433059
ensembl transcript: ENST00000526973
gene symbol: TMEM25
hgvsc: ENST00000526973.1:c.33+676T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000439408
ensembl transcript: ENST00000544878
gene symbol: TMEM25
hgvsc: ENST00000544878.1:c.70+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000435446
ensembl transcript: ENST00000527267
gene symbol: TMEM25
hgvsc: ENST00000527267.1:c.70+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000530423
gene symbol: TMEM25
hgvsc: ENST00000530423.1:n.130+39T>C
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533587
gene symbol: TMEM25
hgvsc: ENST00000533587.1:n.127+39T>C
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 2460
bin: 2.75e1
variant carriers: 16

GenotypeDepth
all individuals: 35
bin: 4.75e1
variant carriers: 7

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1028
bin: 1.25e1
variant carriers: 14

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 4.25e1
variant carriers: 9

GenotypeDepth
all individuals: 26896
bin: 2.5e0
variant carriers: 55

GenotypeDepth
all individuals: 2382
bin: 7.5e0
variant carriers: 81

GenotypeDepth
all individuals: 4023
bin: 2.25e1
variant carriers: 19

GenotypeDepth
all individuals: 127
bin: 3.75e1
variant carriers: 10

GenotypeDepth
all individuals: 1741
bin: 1.75e1
variant carriers: 11

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 17
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 666
bin: 3.25e1
variant carriers: 13

GenotypeDepth
all individuals: 24
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 290
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22174
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 4673
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 537
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4955
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 722
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 277
bin: 9.75e1
variant carriers: 108

Other
type: Population
allele count: 2
allele frequency: 1.063829787234043e-2
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.285714285714286e-2
allele num: 70
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.050144394854293e-3
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.072194424588992e-3
allele num: 2798
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.015228426395939e-2
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 87
allele frequency: 1.004851004851005e-2
allele num: 8658
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 3.01029e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.569999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431663
ensembl transcript: ENST00000525118
gene symbol: TMEM25
hgvsc: ENST00000525118.1:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000416071
ensembl transcript: ENST00000442938
gene symbol: TMEM25
hgvsc: ENST00000442938.2:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000315635
ensembl transcript: ENST00000313236
gene symbol: TMEM25
hgvsc: ENST00000313236.5:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533627
gene symbol: TMEM25
hgvsc: ENST00000533627.1:n.130+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433059
ensembl transcript: ENST00000526973
gene symbol: TMEM25
hgvsc: ENST00000526973.1:c.33+684C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000533587
gene symbol: TMEM25
hgvsc: ENST00000533587.1:n.127+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431548
ensembl transcript: ENST00000533102
gene symbol: TMEM25
hgvsc: ENST00000533102.1:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433906
ensembl transcript: ENST00000532762
gene symbol: TMEM25
hgvsc: ENST00000532762.1:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000352924
ensembl transcript: ENST00000359862
gene symbol: TMEM25
hgvsc: ENST00000359862.4:c.70+47C>A
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 12
bin: 6.25e1
variant carriers: 5

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 12

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 27561
bin: 2.5e0
variant carriers: 89

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 17

GenotypeDepth
all individuals: 1054
bin: 1.25e1
variant carriers: 41

GenotypeDepth
all individuals: 3953
bin: 2.25e1
variant carriers: 52

GenotypeDepth
all individuals: 76
bin: 4.25e1
variant carriers: 21

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2166
bin: 2.75e1
variant carriers: 53

GenotypeDepth
all individuals: 671
bin: 3.25e1
variant carriers: 39

GenotypeDepth
all individuals: 2677
bin: 7.5e0
variant carriers: 85

GenotypeDepth
all individuals: 159
bin: 3.75e1
variant carriers: 26

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1971
bin: 1.75e1
variant carriers: 43

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 7

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 9.75e1
variant carriers: 313

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 834
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 689
bin: 1.25e1
variant carriers: 16

GenotypeQuality
all individuals: 2896
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 771
bin: 6.75e1
variant carriers: 14

GenotypeQuality
all individuals: 933
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20743
bin: 7.5e0
variant carriers: 42

GenotypeQuality
all individuals: 949
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 6780
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1595
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 920
bin: 1.75e1
variant carriers: 8

Latino
type: Population
allele count: 2
allele frequency: 5.076142131979695e-3
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 8.629989212513484e-3
allele num: 7416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.351351351351351e-2
allele num: 74
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 245
allele frequency: 2.84486762656758e-2
allele num: 8612
num of homozygotes: 6

African
type: Population
allele count: 19
allele frequency: 6.805157593123209e-3
allele num: 2792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

DP
type: SiteQuality
SIO_000300: 3.04326e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.33e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000525298
gene symbol: TMEM25
hgvsc: ENST00000525298.1:n.129+49C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000532749
gene symbol: TMEM25
hgvsc: ENST00000532749.1:n.153+49C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000529176
gene symbol: TMEM25
hgvsc: ENST00000529176.1:n.179C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000431663
ensembl transcript: ENST00000525118
gene symbol: TMEM25
hgvsc: ENST00000525118.1:c.70+49C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000411882
ensembl transcript: ENST00000411589
gene symbol: TMEM25
hgvsc: ENST00000411589.2:c.70+49C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000433059
ensembl transcript: ENST00000526973
gene symbol: TMEM25
hgvsc: ENST00000526973.1:c.33+686C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149582
ensembl transcript: ENST00000524522
gene symbol: TMEM25
hgvsc: ENST00000524522.1:n.719C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000432040
ensembl transcript: ENST00000528373
gene symbol: TMEM25
hgvsc: ENST00000528373.1:c.70+49C>G
variant of: http://identifiers.org/hgnc/25890

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149582
ensembl protein: ENSP00000416071
ensembl transcript: ENST00000442938
gene symbol: TMEM25
hgvsc: ENST00000442938.2:c.70+49C>G
variant of: http://identifiers.org/hgnc/25890

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2726
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 680
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1961
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 4.25e1
variant carriers: 0