11-57414178-TCACA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414178
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414174
    reference: chr 11
allele count: 1
allele frequency: 9.087439341342396e-6
allele num: 110042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+258_141+261delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3588_298-3585delCACA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.502_505delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.516_519delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3588_156-3585delCACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+42_185+45delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+42_185+45delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+42_185+45delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+42_185+45delTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+42_185+45delTGTG
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: TCACA
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

11-57414178-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414178
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414176
    reference: chr 11
allele count: 1
allele frequency: 9.087439341342396e-6
allele num: 110042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.504_505delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+44_185+45delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+44_185+45delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3586_298-3585delCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+44_185+45delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+260_141+261delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.518_519delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+44_185+45delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+44_185+45delTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3586_156-3585delCA
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TCA
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

11-57414179-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414179
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414179
    reference: chr 11
allele count: 1
allele frequency: 9.017620430320846e-6
allele num: 110894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.519G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.505G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3592C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+261G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3592C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+45G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/11-57414180-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414180
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414180
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 111324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3591A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.518T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.504T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+44T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+44T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+44T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+44T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+44T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3591A>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+260T>G
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

11-57414182-A-ACACAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414182
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414188
    reference: chr 11
allele count: 2
allele frequency: 1.793078716155639e-5
allele num: 111540
alternate allele: ACACAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+36_185+41dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.496_501dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+36_185+41dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.510_515dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+252_141+257dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+36_185+41dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+36_185+41dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+36_185+41dupCTTGTG
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-57414182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414182
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414182
    reference: chr 11
allele count: 2
allele frequency: 1.793078716155639e-5
allele num: 111540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3589A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.502T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3589A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+42T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+42T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+42T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.516T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+42T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+258T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+42T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-57414193-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414193
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414193
    reference: chr 11
allele count: 1
allele frequency: 8.922516863556873e-6
allele num: 112076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+31T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.491T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+247T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+31T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3578A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.505T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+31T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+31T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+31T>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3578A>C
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5432
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-57414199-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414199
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414199
    reference: chr 11
allele count: 3
allele frequency: 2.657548323087008e-5
allele num: 112886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+241G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.559G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+25G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.499G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+25G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+25G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.485G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+25G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3572C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+25G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3572C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57414200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414200
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414200
    reference: chr 11
allele count: 256
allele frequency: 2.268699042892591e-3
allele num: 112840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3571G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.185+24C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3571G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.185+24C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.558C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.498C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.185+24C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.484C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.185+24C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+240C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.185+24C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25159
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 4
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

11-57414226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414226
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414226
    reference: chr 11
allele count: 2
allele frequency: 1.727115716753023e-5
allele num: 115800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.183C>T
  hgvsp: ENST00000534711.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.183C>T
  hgvsp: ENST00000544993.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.183C>T
  hgvsp: ENST00000524669.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.183C>T
  hgvsp: ENST00000534810.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3545G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.183C>T
  hgvsp: ENST00000300022.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.532C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.458C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3545G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.472C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+214C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.183C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-57414235-CAGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414235
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414231
    reference: chr 11
allele count: 1
allele frequency: 8.589736982253604e-6
allele num: 116418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.170_173delACCT
  hgvsp: ENSP00000432165.1:p.Tyr57CysfsTer25
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3532_298-3529delTAGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.519_522delACCT
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.459_462delACCT
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3532_156-3529delTAGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.170_173delACCT
  hgvsp: ENSP00000432648.1:p.Tyr57CysfsTer25
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.170_173delACCT
  hgvsp: ENSP00000438126.1:p.Tyr57CysfsTer25
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.170_173delACCT
  hgvsp: ENSP00000432826.1:p.Tyr57CysfsTer?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+201_141+204delACCT
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.170_173delACCT
  hgvsp: ENSP00000300022.3:p.Tyr57CysfsTer25
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.445_448delACCT
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr57CysfsTer25
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CAGGT
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-57414238-GTAGGCTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414238
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414231
    reference: chr 11
allele count: 1
allele frequency: 8.580597552813579e-6
allele num: 116542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.164_170delGAGCCTA
  hgvsp: ENSP00000300022.3:p.Arg55ProfsTer26
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.513_519delGAGCCTA
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.164_170delGAGCCTA
  hgvsp: ENSP00000438126.1:p.Arg55ProfsTer26
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.164_170delGAGCCTA
  hgvsp: ENSP00000432826.1:p.Arg55ProfsTer?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.164_170delGAGCCTA
  hgvsp: ENSP00000432165.1:p.Arg55ProfsTer26
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.453_459delGAGCCTA
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.164_170delGAGCCTA
  hgvsp: ENSP00000432648.1:p.Arg55ProfsTer26
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.439_445delGAGCCTA
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4561
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg55ProfsTer26
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: GTAGGCTC
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

11-57414279-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414279
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414279
    reference: chr 11
allele count: 20
allele frequency: 1.728877439878287e-4
allele num: 115682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3492T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3492T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+161A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-12A>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-12A>G
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24245
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-57414281-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414281
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414281
    reference: chr 11
allele count: 1
allele frequency: 8.649172274213358e-6
allele num: 115618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3490G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3490G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-14C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+159C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-14C>G
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-57414285-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414285
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414285
    reference: chr 11
allele count: 1
allele frequency: 8.654861435668416e-6
allele num: 115542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+155T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3486A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3486A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-18T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-18T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-57414288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414288
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414288
    reference: chr 11
allele count: 8
allele frequency: 6.940949868989571e-5
allele num: 115258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3483C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3483C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-21G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+152G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-21G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8152
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 25570
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

11-57414292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414292
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414292
    reference: chr 11
allele count: 1
allele frequency: 8.680404854082394e-6
allele num: 115202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+148C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-25C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3479G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3479G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS

11-57414296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414296
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414296
    reference: chr 11
allele count: 3
allele frequency: 2.607561929595828e-5
allele num: 115050
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3475A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3475A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+144T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-29T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-29T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9985
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

11-57414307-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414307
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414307
    reference: chr 11
allele count: 1
allele frequency: 8.775162779269556e-6
allele num: 113958
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3464T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3464T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+133A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-40A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-40A>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-57414313-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414313
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414313
    reference: chr 11
allele count: 2
allele frequency: 1.769598301185631e-5
allele num: 113020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.491-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.142-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.142-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3458C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.142-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.417-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.431-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.142-46G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+127G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3458C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.142-46G>C
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

11-57414395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414395
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414395
    reference: chr 11
allele count: 33
allele frequency: 6.4435505916351e-4
allele num: 51214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3376C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.37C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+45G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3376C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26266
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

11-57414401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414401
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414401
    reference: chr 11
allele count: 9
allele frequency: 1.825928180158247e-4
allele num: 49290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3370C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3370C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.43C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+39G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26557
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15200
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

11-57414402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414402
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414402
    reference: chr 11
allele count: 5
allele frequency: 1.010060199587895e-4
allele num: 49502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3369G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3369G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.44G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+38C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+38C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26628
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

11-57414403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414403
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414403
    reference: chr 11
allele count: 5
allele frequency: 1.015352124116644e-4
allele num: 49244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.45C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3368C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3368C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+37G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+37G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26694
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

11-57414415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414415
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414415
    reference: chr 11
allele count: 2
allele frequency: 4.271861249946602e-5
allele num: 46818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3356A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3356A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.57A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+25T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14567
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-57414421-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414421
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414421
    reference: chr 11
allele count: 1
allele frequency: 2.284356725146199e-5
allele num: 43776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3350A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3350A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.63A>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+19T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+19T>A
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27674
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-57414424-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414424
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414424
    reference: chr 11
allele count: 74
allele frequency: 1.927585308674134e-3
allele num: 38390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3347T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.66T>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3347T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+16A>C
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 28506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13409
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

11-57414425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414425
    reference: chr 11
allele count: 12
allele frequency: 2.910643252158727e-4
allele num: 41228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.67C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3346C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3346C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+15G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+15G>C
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-57414428-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414428
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414428
    reference: chr 11
allele count: 2
allele frequency: 4.732831653178096e-5
allele num: 42258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3343C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.70C>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3343C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+12G>T
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

11-57414428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414428
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414428
    reference: chr 11
allele count: 12
allele frequency: 2.839698991906858e-4
allele num: 42258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3343C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.70C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+12G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3343C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+12G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29127
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

11-57414429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414429
    reference: chr 11
allele count: 2
allele frequency: 4.816259692722631e-5
allele num: 41526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3342G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3342G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.71G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+11C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+11C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS

11-57414429-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414429
    reference: chr 11
allele count: 1
allele frequency: 2.408129846361316e-5
allele num: 41526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.71G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3342G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+11C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3342G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+11C>G
  variant of: http://identifiers.org/hgnc/18328
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-57414433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414433
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414433
    reference: chr 11
allele count: 2
allele frequency: 4.720320981826764e-5
allele num: 42370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3338C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.75C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3338C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+7G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.141+7G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

11-57414434-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414434
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414434
    reference: chr 11
allele count: 4
allele frequency: 9.432182607055272e-5
allele num: 42408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3337G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+6C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.76G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3337G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30335
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.141+6C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-57414435-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414435
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414435
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 42628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.77C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3336C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+5G>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3336C>G
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.141+5G>C
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

11-57414435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414435
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414435
    reference: chr 11
allele count: 1
allele frequency: 2.34587595007976e-5
allele num: 42628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3336C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+5G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.77C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3336C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.141+5G>A
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-57414436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414436
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414436
    reference: chr 11
allele count: 6
allele frequency: 1.39697322467986e-4
allele num: 42950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3335G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.78G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3335G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+4C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12367
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30849
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.141+4C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-57414436-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414436
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414436
    reference: chr 11
allele count: 3
allele frequency: 6.984866123399302e-5
allele num: 42950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.490+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.430+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3335G>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.416+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.141+4C>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3335G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.78G>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12367
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.141+4C>A
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

11-57414450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414450
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414450
    reference: chr 11
allele count: 1
allele frequency: 2.168068684415922e-5
allele num: 46124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.131T>C
  hgvsp: ENSP00000434238.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.92A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3321A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3321A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.131T>C
  hgvsp: ENSP00000432165.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.131T>C
  hgvsp: ENSP00000432826.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.406T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.131T>C
  hgvsp: ENSP00000300022.3:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.131T>C
  hgvsp: ENSP00000432648.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.420T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.131T>C
  hgvsp: ENSP00000438126.1:p.Leu44Pro
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.480T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu44Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

11-57414458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414458
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414458
    reference: chr 11
allele count: 6
allele frequency: 1.250312578144536e-4
allele num: 47988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.472C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.398C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.123C>T
  hgvsp: ENST00000300022.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3313G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.123C>T
  hgvsp: ENST00000534810.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.123C>T
  hgvsp: ENST00000534711.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.100G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.123C>T
  hgvsp: ENST00000524669.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.123C>T
  hgvsp: ENST00000532314.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3313G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.123C>T
  hgvsp: ENST00000544993.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.412C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His41His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

11-57414477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414477
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414477
    reference: chr 11
allele count: 2
allele frequency: 3.778718258766626e-5
allele num: 52928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3294C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.379G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.104G>A
  hgvsp: ENSP00000432165.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.453G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3294C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.104G>A
  hgvsp: ENSP00000300022.3:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.104G>A
  hgvsp: ENSP00000432648.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.104G>A
  hgvsp: ENSP00000434238.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.393G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.119C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.104G>A
  hgvsp: ENSP00000432826.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.104G>A
  hgvsp: ENSP00000438126.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30609
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg35His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

11-57414478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414478
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414478
    reference: chr 11
allele count: 2
allele frequency: 3.736781136728822e-5
allele num: 53522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.103C>T
  hgvsp: ENSP00000432826.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.378C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.103C>T
  hgvsp: ENSP00000432165.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.103C>T
  hgvsp: ENSP00000434238.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.120G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.103C>T
  hgvsp: ENSP00000432648.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.392C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3293G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.103C>T
  hgvsp: ENSP00000438126.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3293G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.103C>T
  hgvsp: ENSP00000300022.3:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.452C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg35Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

11-57414484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414484
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414484
    reference: chr 11
allele count: 3
allele frequency: 5.404626360164301e-5
allele num: 55508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.97C>T
  hgvsp: ENSP00000432165.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.97C>T
  hgvsp: ENSP00000438126.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.97C>T
  hgvsp: ENSP00000300022.3:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3287G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.97C>T
  hgvsp: ENSP00000432826.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.386C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.97C>T
  hgvsp: ENSP00000434238.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.97C>T
  hgvsp: ENSP00000432648.1:p.His33Tyr
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3287G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.126G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.446C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.372C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His33Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

11-57414510-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414510
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414511
    reference: chr 11
allele count: 2
allele frequency: 3.545093590470789e-5
allele num: 56416
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.70dupC
  hgvsp: ENSP00000432165.1:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.70dupC
  hgvsp: ENSP00000438126.1:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.70dupC
  hgvsp: ENSP00000300022.3:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.419dupC
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3257dupG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.70dupC
  hgvsp: ENSP00000432826.1:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.70dupC
  hgvsp: ENSP00000434238.1:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.359dupC
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.70dupC
  hgvsp: ENSP00000432648.1:p.Arg24ProfsTer20
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.345dupC
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+21dupG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3257dupG
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg24ProfsTer20
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

11-57414510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414510
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414510
    reference: chr 11
allele count: 6
allele frequency: 1.063528077141237e-4
allele num: 56416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+17C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.346G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.71G>A
  hgvsp: ENSP00000300022.3:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.71G>A
  hgvsp: ENSP00000438126.1:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.71G>A
  hgvsp: ENSP00000434238.1:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.71G>A
  hgvsp: ENSP00000432826.1:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.71G>A
  hgvsp: ENSP00000432165.1:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3261C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.360G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.420G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.71G>A
  hgvsp: ENSP00000432648.1:p.Arg24His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3261C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg24His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-57414514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414514
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414514
    reference: chr 11
allele count: 1
allele frequency: 1.777777777777778e-5
allele num: 56250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.67C>T
  hgvsp: ENSP00000434238.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.342C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.67C>T
  hgvsp: ENSP00000432648.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3257G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.416C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.67C>T
  hgvsp: ENSP00000432165.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.356C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.67C>T
  hgvsp: ENSP00000432826.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.67C>T
  hgvsp: ENSP00000300022.3:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3257G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.67C>T
  hgvsp: ENSP00000438126.1:p.Pro23Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+21G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro23Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

11-57414519-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414519
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414519
    reference: chr 11
allele count: 1
allele frequency: 1.774748873034465e-5
allele num: 56346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.411A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.62A>T
  hgvsp: ENSP00000432648.1:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.62A>T
  hgvsp: ENSP00000300022.3:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.62A>T
  hgvsp: ENSP00000434238.1:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.62A>T
  hgvsp: ENSP00000438126.1:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.337A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.351A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.62A>T
  hgvsp: ENSP00000432165.1:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3252T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+26T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.62A>T
  hgvsp: ENSP00000432826.1:p.Tyr21Phe
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3252T>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr21Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-57414525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414525
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414525
    reference: chr 11
allele count: 1
allele frequency: 1.795590030884149e-5
allele num: 55692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.405G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3246C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.56G>A
  hgvsp: ENSP00000432165.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.56G>A
  hgvsp: ENSP00000300022.3:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.345G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.56G>A
  hgvsp: ENSP00000432648.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.56G>A
  hgvsp: ENSP00000432826.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.56G>A
  hgvsp: ENSP00000434238.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.331G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+32C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3246C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.56G>A
  hgvsp: ENSP00000438126.1:p.Arg19His
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28225
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg19His
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

11-57414526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414526
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414526
    reference: chr 11
allele count: 1
allele frequency: 1.810544611819235e-5
allele num: 55232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+33G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.330C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.55C>T
  hgvsp: ENSP00000434238.1:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.344C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.404C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.55C>T
  hgvsp: ENSP00000432165.1:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3245G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.55C>T
  hgvsp: ENSP00000432826.1:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.55C>T
  hgvsp: ENSP00000432648.1:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.55C>T
  hgvsp: ENSP00000300022.3:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.55C>T
  hgvsp: ENSP00000438126.1:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3245G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg19Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-57414538-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414538
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414538
    reference: chr 11
allele count: 1
allele frequency: 1.843657817109145e-5
allele num: 54240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.332A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3233T>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.43A>T
  hgvsp: ENSP00000432648.1:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.43A>T
  hgvsp: ENSP00000434238.1:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.318A>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.43A>T
  hgvsp: ENSP00000438126.1:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.43A>T
  hgvsp: ENSP00000432826.1:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.43A>T
  hgvsp: ENSP00000300022.3:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+45T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.43A>T
  hgvsp: ENSP00000432165.1:p.Thr15Ser
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3233T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.392A>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr15Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-57414556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414556
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414556
    reference: chr 11
allele count: 1
allele frequency: 1.998880626848964e-5
allele num: 50028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.314G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.300G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.374G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.25G>T
  hgvsp: ENSP00000432165.1:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.25G>T
  hgvsp: ENSP00000432826.1:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.25G>T
  hgvsp: ENSP00000434238.1:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.25G>T
  hgvsp: ENSP00000300022.3:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.25G>T
  hgvsp: ENSP00000432648.1:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.25G>T
  hgvsp: ENSP00000438126.1:p.Gly9Cys
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+63C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3215C>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3215C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly9Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/11-57414557-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414557
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414557
    reference: chr 11
allele count: 1
allele frequency: 2.02077355211575e-5
allele num: 49486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.24G>T
  hgvsp: ENST00000532314.1:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.24G>T
  hgvsp: ENST00000534810.1:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.313G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3214C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.24G>T
  hgvsp: ENST00000300022.3:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.24G>T
  hgvsp: ENST00000544993.1:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.24G>T
  hgvsp: ENST00000534711.1:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.373G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.24G>T
  hgvsp: ENST00000524669.1:c.24G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.299G>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3214C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+64C>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro8Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

11-57414557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414557
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414557
    reference: chr 11
allele count: 3
allele frequency: 6.06232065634725e-5
allele num: 49486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.24G>A
  hgvsp: ENST00000544993.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.299G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+64C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.373G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.24G>A
  hgvsp: ENST00000532314.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.24G>A
  hgvsp: ENST00000534711.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.24G>A
  hgvsp: ENST00000534810.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.24G>A
  hgvsp: ENST00000300022.3:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3214C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.313G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3214C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.24G>A
  hgvsp: ENST00000524669.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26719
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro8Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

11-57414558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414558
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414558
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 49052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3213G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.372C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.23C>T
  hgvsp: ENSP00000432165.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.23C>T
  hgvsp: ENSP00000432648.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.23C>T
  hgvsp: ENSP00000438126.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3213G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.23C>T
  hgvsp: ENSP00000434238.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.298C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.23C>T
  hgvsp: ENSP00000300022.3:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.23C>T
  hgvsp: ENSP00000432826.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+65G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.312C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26670
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro8Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-57414563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414563
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414563
    reference: chr 11
allele count: 3
allele frequency: 6.28140703517588e-5
allele num: 47760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.18C>T
  hgvsp: ENST00000524669.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3208G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.367C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.18C>T
  hgvsp: ENST00000534711.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.307C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.18C>T
  hgvsp: ENST00000544993.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3208G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.18C>T
  hgvsp: ENST00000534810.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+70G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.18C>T
  hgvsp: ENST00000300022.3:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.293C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.18C>T
  hgvsp: ENST00000532314.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro6Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-57414579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414579
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414579
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 42104
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3192A>G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.2T>C
  hgvsp: ENSP00000432826.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.2T>C
  hgvsp: ENSP00000434238.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.2T>C
  hgvsp: ENSP00000432648.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.291T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.2T>C
  hgvsp: ENSP00000300022.3:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+86A>G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.2T>C
  hgvsp: ENSP00000432165.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3192A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.351T>C
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.2T>C
  hgvsp: ENSP00000438126.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.277T>C
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: start lost
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

11-57414583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414583
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414583
    reference: chr 11
allele count: 69
allele frequency: 1.726294721040781e-3
allele num: 39970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.273G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.347G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3188C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3188C>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+90C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.287G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15981
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23166
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

11-57414584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414584
    reference: chr 11
allele count: 3
allele frequency: 7.583417593528817e-5
allele num: 39560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.346C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3187G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.272C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3187G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+91G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.286C>T
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9693
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22971
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

11-57414587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414587
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414587
    reference: chr 11
allele count: 1
allele frequency: 2.598482486228043e-5
allele num: 38484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3184C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3184C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.283G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.269G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+94C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.343G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22505
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9498
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

11-57414594-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414594
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414594
    reference: chr 11
allele count: 1
allele frequency: 2.792048246593701e-5
allele num: 35816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.336T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.262T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3177A>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3177A>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-14T>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+101A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.276T>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-57414618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414618
    reference: chr 11
allele count: 1
allele frequency: 3.907471084713973e-5
allele num: 25592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3153G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+125G>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.252C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3153G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.312C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.238C>G
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-38C>G
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

11-57414623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414623
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414623
    reference: chr 11
allele count: 8
allele frequency: 3.465003465003465e-4
allele num: 23088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.307G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3148C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+130C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.233G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3148C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.247G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26189
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18680
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

11-57414626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57414626
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57414626
    reference: chr 11
allele count: 1
allele frequency: 4.427129449265097e-5
allele num: 22588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000525988
  gene symbol: AP000662.4
  hgvsc: ENST00000525988.1:n.135+133C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000524592
  gene symbol: YPEL4
  hgvsc: ENST00000524592.1:n.230G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000434238
  ensembl transcript: ENST00000532314
  gene symbol: YPEL4
  hgvsc: ENST00000532314.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432648
  ensembl transcript: ENST00000524669
  gene symbol: YPEL4
  hgvsc: ENST00000524669.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000438126
  ensembl transcript: ENST00000544993
  gene symbol: YPEL4
  hgvsc: ENST00000544993.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000530595
  gene symbol: AP000662.4
  hgvsc: ENST00000530595.1:n.298-3145C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432165
  ensembl transcript: ENST00000534711
  gene symbol: YPEL4
  hgvsc: ENST00000534711.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000432826
  ensembl transcript: ENST00000534810
  gene symbol: YPEL4
  hgvsc: ENST00000534810.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000166793
  ensembl protein: ENSP00000300022
  ensembl transcript: ENST00000300022
  gene symbol: YPEL4
  hgvsc: ENST00000300022.3:c.-46G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254602
  ensembl transcript: ENST00000528466
  gene symbol: AP000662.4
  hgvsc: ENST00000528466.1:n.156-3145C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000529776
  gene symbol: YPEL4
  hgvsc: ENST00000529776.1:n.304G>A
  variant of: http://identifiers.org/hgnc/18328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000166793
  ensembl transcript: ENST00000528797
  gene symbol: YPEL4
  hgvsc: ENST00000528797.1:n.244G>A
  variant of: http://identifiers.org/hgnc/18328
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-57424535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57424535
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57424535
    reference: chr 11
allele count: 1
allele frequency: 9.28332714444857e-5
allele num: 10772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000435287
  ensembl transcript: ENST00000529773
  gene symbol: CLP1
  hgvsc: ENST00000529773.1:c.-22-2392G>A
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000433406
  ensembl transcript: ENST00000529430
  gene symbol: CLP1
  hgvsc: ENST00000529430.1:c.-7G>A
  variant of: http://identifiers.org/hgnc/16999
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7506
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

11-57424543-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57424543
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57424543
    reference: chr 11
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000433406
  ensembl transcript: ENST00000529430
  gene symbol: CLP1
  hgvsc: ENST00000529430.1:c.2T>C
  hgvsp: ENSP00000433406.1:p.Met1?
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000435287
  ensembl transcript: ENST00000529773
  gene symbol: CLP1
  hgvsc: ENST00000529773.1:c.-22-2384T>C
  variant of: http://identifiers.org/hgnc/16999
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 190
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

11-57426881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57426881
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57426881
    reference: chr 11
allele count: 1
allele frequency: 1.02303883455416e-5
allele num: 97748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000436066
  ensembl transcript: ENST00000525602
  gene symbol: CLP1
  hgvsc: ENST00000525602.1:c.-13-55A>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000434995
  ensembl transcript: ENST00000533682
  gene symbol: CLP1
  hgvsc: ENST00000533682.1:c.-22-46A>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000433406
  ensembl transcript: ENST00000529430
  gene symbol: CLP1
  hgvsc: ENST00000529430.1:c.12-46A>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000431744
  ensembl transcript: ENST00000533905
  gene symbol: CLP1
  hgvsc: ENST00000533905.1:c.-47-21A>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000304704
  ensembl transcript: ENST00000302731
  gene symbol: CLP1
  hgvsc: ENST00000302731.4:c.-22-46A>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000435287
  ensembl transcript: ENST00000529773
  gene symbol: CLP1
  hgvsc: ENST00000529773.1:c.-22-46A>G
  variant of: http://identifiers.org/hgnc/16999
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

11-57426892-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57426892
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57426892
    reference: chr 11
allele count: 3
allele frequency: 3.013984889889085e-5
allele num: 99536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000435287
  ensembl transcript: ENST00000529773
  gene symbol: CLP1
  hgvsc: ENST00000529773.1:c.-22-35T>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000431744
  ensembl transcript: ENST00000533905
  gene symbol: CLP1
  hgvsc: ENST00000533905.1:c.-47-10T>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000433406
  ensembl transcript: ENST00000529430
  gene symbol: CLP1
  hgvsc: ENST00000529430.1:c.12-35T>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000304704
  ensembl transcript: ENST00000302731
  gene symbol: CLP1
  hgvsc: ENST00000302731.4:c.-22-35T>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000434995
  ensembl transcript: ENST00000533682
  gene symbol: CLP1
  hgvsc: ENST00000533682.1:c.-22-35T>G
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000436066
  ensembl transcript: ENST00000525602
  gene symbol: CLP1
  hgvsc: ENST00000525602.1:c.-13-44T>G
  variant of: http://identifiers.org/hgnc/16999
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

11-57426901-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57426901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57426901
    reference: chr 11
allele count: 3
allele frequency: 2.936742565146739e-5
allele num: 102154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000431744
  ensembl transcript: ENST00000533905
  gene symbol: CLP1
  hgvsc: ENST00000533905.1:c.-47-1G>C
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000433406
  ensembl transcript: ENST00000529430
  gene symbol: CLP1
  hgvsc: ENST00000529430.1:c.12-26G>C
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000304704
  ensembl transcript: ENST00000302731
  gene symbol: CLP1
  hgvsc: ENST00000302731.4:c.-22-26G>C
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000435287
  ensembl transcript: ENST00000529773
  gene symbol: CLP1
  hgvsc: ENST00000529773.1:c.-22-26G>C
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000434995
  ensembl transcript: ENST00000533682
  gene symbol: CLP1
  hgvsc: ENST00000533682.1:c.-22-26G>C
  variant of: http://identifiers.org/hgnc/16999
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172409
  ensembl protein: ENSP00000436066
  ensembl transcript: ENST00000525602
  gene symbol: CLP1
  hgvsc: ENST00000525602.1:c.-13-35G>C
  variant of: http://identifiers.org/hgnc/16999
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30133
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31382
  bin: 6.25e1
  variant carriers: 0
hgvs: c.-47-1G>C
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 430
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639774367047094e-5
allele num: 60984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 3.619e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.507117e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.03e1

GenotypeQuality
all individuals: 416
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.008267795926598e-4
allele num: 9918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.03e1

DP
type: SiteQuality
SIO_000300: 1.507117e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.067e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 3.619e0

GenotypeQuality
all individuals: 676
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4534
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13439
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.088613106901807e-4
allele num: 9186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.435e0

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.51106e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 298
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14805
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 1.515139e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 7.09e0

VQSLOD
type: SiteQuality
SIO_000300: -7.358e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17351
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615926572296555e-5
allele num: 61884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.519e1

FS
type: SiteQuality
SIO_000300: 2.167e0

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 7.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.526488e6

GenotypeQuality
all individuals: 5194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.972386587771203e-4
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15294
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.519e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 1.526488e6

FS
type: SiteQuality
SIO_000300: 2.167e0

QD
type: SiteQuality
SIO_000300: 7.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 8159
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608544588856003e-5
allele num: 62168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.254e0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

QD
type: SiteQuality
SIO_000300: 4.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.597104e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 1435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8164
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.430724355858046e-4
allele num: 8228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596169193934557e-5
allele num: 62650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 1.628064e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

FS
type: SiteQuality
SIO_000300: 4.728e0

MQRankSum
type: SiteQuality
SIO_000300: -9.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.204e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 1380
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 831
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 686
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 863
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8327
bin: 9.75e1
variant carriers: 247

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28794
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 233
allele frequency: 2.490380504489098e-2
allele num: 9356
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.176470588235294e-3
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.517205422314912e-5
allele num: 15344
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.254099942118464e-3
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.278118609406953e-4
allele num: 62592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.638506e6

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeDepth
all individuals: 11370
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8149
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.379992344009187e-5
allele num: 15674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64134
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 5.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

DP
type: SiteQuality
SIO_000300: 1.708856e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551782998665467e-5
allele num: 64442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.435e0

DP
type: SiteQuality
SIO_000300: 1.719798e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.09e-1

FS
type: SiteQuality
SIO_000300: 2.314e0

MQ
type: SiteQuality
SIO_000300: 5.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e1

DP
type: SiteQuality
SIO_000300: 1.721767e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 4.06e0

VQSLOD
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 2226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5353
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8166
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 31036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.121780663690569e-4
allele num: 64066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 3.443e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
type: SiteQuality
SIO_000300: 1.674113e6

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043187982474442e-4
allele num: 9586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.668739e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 3.139e1

VQSLOD
type: SiteQuality
SIO_000300: -1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041883725776203e-4
allele num: 9598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 1.655852e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 3.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.405329233922624e-5
allele num: 15612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.833552672808173e-5
allele num: 63828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.858736059479554e-4
allele num: 10760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.633022e6

VQSLOD
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.24e-1

QD
type: SiteQuality
SIO_000300: 1.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
all individuals: 1254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8145
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567005139776858e-5
allele num: 63816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 7.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.212e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.367e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 1.625328e6

FS
type: SiteQuality
SIO_000300: 2.049e0

GenotypeQuality
all individuals: 3529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4588
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8145
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 23101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.923076923076923e-4
allele num: 15600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.2721e1

QD
type: SiteQuality
SIO_000300: 1.558e1

DP
type: SiteQuality
SIO_000300: 1.602561e6

GenotypeQuality
all individuals: 5737
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7072
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583130164962163e-5
allele num: 63166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.479e0

FS
type: SiteQuality
SIO_000300: 2.098e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.543099e6

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 5.76e0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8147
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.193153878085385e-5
allele num: 62634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.34e-1

DP
type: SiteQuality
SIO_000300: 1.525439e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 1627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26284
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 3023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8105
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4403
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 8.116883116883117e-4
allele num: 2464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.089561996077577e-4
allele num: 9178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 1.060070671378092e-3
allele num: 28300
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.683e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.42952e5

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8599
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3690
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3460
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1037
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 26334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 2.03962703962704e-3
allele num: 3432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.67026352492109e-5
allele num: 27246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.946282600233554e-4
allele num: 5138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

QD
type: SiteQuality
SIO_000300: 1.157e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 7.34254e5

GenotypeQuality
all individuals: 390
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 755
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4203
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26493
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1512
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 9.697439875872769e-4
allele num: 5156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 7.31302e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.868e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 8723
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3620
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3897
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.466598225416147e-4
allele num: 27274
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.463054187192118e-3
allele num: 406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 8.404e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.96e-1

DP
type: SiteQuality
SIO_000300: 7.32045e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
all individuals: 26687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25956
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.031363088057901e-4
allele num: 3316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.494e0

VQSLOD
type: SiteQuality
SIO_000300: -2.992e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.098e1

DP
type: SiteQuality
SIO_000300: 7.16761e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 23986
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1718
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5098
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10691
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4651
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.170630816959669e-4
allele num: 1934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 7.09393e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 3.157e0

VQSLOD
type: SiteQuality
SIO_000300: -3.865e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

GenotypeQuality
all individuals: 190
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 485
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1399
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 10043
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4681
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4674
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3206
bin: 2.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 2.076255190637977e-3
allele num: 21192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 7.583682008368201e-3
allele num: 3824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e0

DP
type: SiteQuality
SIO_000300: 6.82621e5

FS
type: SiteQuality
SIO_000300: 2.26061e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.177e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.809e0

VQSLOD
type: SiteQuality
SIO_000300: -2.401e2

GenotypeQuality
all individuals: 1381
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4594
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5809
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10437
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1786
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 690
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.183215439699589e-4
allele num: 22902
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.540492957746479e-3
allele num: 4544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e0

VQSLOD
type: SiteQuality
SIO_000300: -5.971e1

FS
type: SiteQuality
SIO_000300: 1.07187e2

MQ
type: SiteQuality
SIO_000300: 5.769e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

DP
type: SiteQuality
SIO_000300: 6.54991e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.915e0

QD
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 4330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.496176720475786e-5
allele num: 23540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

DP
type: SiteQuality
SIO_000300: 6.55401e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.114e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

GenotypeQuality
all individuals: 3315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25840
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 9.75e1
variant carriers: 13

African
type: Population
allele count: 10
allele frequency: 2.168256721595837e-3
allele num: 4612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3072
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.138952164009112e-3
allele num: 1756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.55401e5

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.114e0

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9952
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.320400933206602e-5
allele num: 23146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.199736031676199e-4
allele num: 4546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.54e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

DP
type: SiteQuality
SIO_000300: 6.55424e5

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 9.603e0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9952
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.320400933206602e-5
allele num: 23146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 9.603e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 6.55424e5

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeDepth
all individuals: 286
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 66
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.314063848144953e-4
allele num: 4636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23720
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.131e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

FS
type: SiteQuality
SIO_000300: 9.970000000000001e0

QD
type: SiteQuality
SIO_000300: 1.324e1

DP
type: SiteQuality
SIO_000300: 6.63e5

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 132
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1071
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8869
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 29215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.585983966899405e-4
allele num: 7734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.431703204047218e-5
allele num: 23720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 6.65173e5

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.70644e5

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 9.499000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeDepth
all individuals: 2088
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8447
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.145002145002145e-4
allele num: 4662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 9.499000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.48e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 6.70644e5

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8038
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.287332646755922e-4
allele num: 7768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.663201663201663e-4
allele num: 24050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.574136008918618e-4
allele num: 1794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 1.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

DP
type: SiteQuality
SIO_000300: 6.756e5

QD
type: SiteQuality
SIO_000300: 1.047e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeDepth
all individuals: 2453
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8038
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 651
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.247401247401248e-4
allele num: 24050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

FS
type: SiteQuality
SIO_000300: 1.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 6.756e5

QD
type: SiteQuality
SIO_000300: 1.047e1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5054
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.834944009817457e-5
allele num: 26076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.324e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

DP
type: SiteQuality
SIO_000300: 7.22335e5

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

GenotypeDepth
all individuals: 132
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.202158114952654e-4
allele num: 27246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 7.46527e5

QD
type: SiteQuality
SIO_000300: 1.176e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 4.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 448
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 65
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.62471016893011e-5
allele num: 30190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.414e1

FS
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 6.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

DP
type: SiteQuality
SIO_000300: 8.0157e5

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

GenotypeDepth
all individuals: 575
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 749
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.280624630929729e-5
allele num: 30482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.123090745732255e-4
allele num: 8904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 2.801e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 2.375e1

VQSLOD
type: SiteQuality
SIO_000300: -1.786e0

DP
type: SiteQuality
SIO_000300: 8.06623e5

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 65
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31610
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.338078291814947e-4
allele num: 5620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.532e0

QD
type: SiteQuality
SIO_000300: 3.081e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

FS
type: SiteQuality
SIO_000300: 8.861000000000001e0

DP
type: SiteQuality
SIO_000300: 8.26749e5

GenotypeDepth
all individuals: 576
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.517411185367569e-4
allele num: 5686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 8.44182e5

QD
type: SiteQuality
SIO_000300: 1.235e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

GenotypeDepth
all individuals: 52
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 284
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 31251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.423886410755796e-5
allele num: 31834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.125e-4
allele num: 9600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 3.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 8.44182e5

QD
type: SiteQuality
SIO_000300: 1.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeDepth
all individuals: 132
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11124
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.158160687215766e-5
allele num: 31664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.674e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

DP
type: SiteQuality
SIO_000300: 8.36249e5

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.157761778451433e-5
allele num: 31668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 8.36519e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -2.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 4.38e0

GenotypeDepth
all individuals: 1236
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.207595586348473e-5
allele num: 31176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.3982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 5.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

DP
type: SiteQuality
SIO_000300: 8.32332e5

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2410
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.238132245320899e-5
allele num: 30882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

FS
type: SiteQuality
SIO_000300: 4.561e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 8.27062e5

GenotypeDepth
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5492
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 7.215007215007215e-4
allele num: 1386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.561e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 8.13049e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

QD
type: SiteQuality
SIO_000300: 1.583e1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.667033370003667e-5
allele num: 27270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

FS
type: SiteQuality
SIO_000300: 3.746e0

DP
type: SiteQuality
SIO_000300: 7.64093e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

QD
type: SiteQuality
SIO_000300: 1.096e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 132
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9121
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8526
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.357378595002357e-4
allele num: 4242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26938
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.376e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.60501e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 7.41e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

GenotypeDepth
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8526
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9121
bin: 6.25e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 2.11595429538722e-4
allele num: 9452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.712228079293192e-5
allele num: 26938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.376e-1

DP
type: SiteQuality
SIO_000300: 7.60501e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

GenotypeDepth
all individuals: 51
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8696
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

DP
type: SiteQuality
SIO_000300: 7.57219e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 30177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8647
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9738
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.213367609254498e-4
allele num: 9336
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.071e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

FS
type: SiteQuality
SIO_000300: 1.878e0

DP
type: SiteQuality
SIO_000300: 7.39904e5

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

GenotypeDepth
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.66877e5

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 25266
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16149
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 293
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5759
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1695
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1409
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20944
num of homozygotes: 0

African
type: Population
allele count: 65
allele frequency: 1.409366869037294e-2
allele num: 4612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.731343283582089e-3
allele num: 268
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.242152466367713e-3
allele num: 1338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.339e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 6.49585e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 1715
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16656
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1352
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.18435998252512e-4
allele num: 4578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.330459100442787e-4
allele num: 8582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.42388e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

FS
type: SiteQuality
SIO_000300: 8.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeQuality
all individuals: 1250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24621
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.078817733990148e-4
allele num: 3248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 6.28312e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

QD
type: SiteQuality
SIO_000300: 7.02e0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19964
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.4608999563128e-5
allele num: 18312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.371e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 5.92512e5

FS
type: SiteQuality
SIO_000300: 1.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.69e0

GenotypeQuality
all individuals: 24662
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5332
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.40686550365785e-4
allele num: 7108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.103e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.70736e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 1058
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23672
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6089
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 4607
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4474
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 7.447402718301992e-4
allele num: 10742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 4.53306e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 6288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4713
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.128911138923655e-4
allele num: 3196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.42e-2

QD
type: SiteQuality
SIO_000300: 1.526e1

VQSLOD
type: SiteQuality
SIO_000300: -4.131e-1

FS
type: SiteQuality
SIO_000300: 9.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.49108e5

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 4.495e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.098e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

DP
type: SiteQuality
SIO_000300: 4.94908e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

FS
type: SiteQuality
SIO_000300: 9.842000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -1.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.537e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 4.94766e5

GenotypeQuality
all individuals: 2778
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.837627255687456e-5
allele num: 54418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.556e0

DP
type: SiteQuality
SIO_000300: 9.21594e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

QD
type: SiteQuality
SIO_000300: 4.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.416922465783106e-5
allele num: 55382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

DP
type: SiteQuality
SIO_000300: 9.99588e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 1.058e0

QD
type: SiteQuality
SIO_000300: 1.049e1

MQ
type: SiteQuality
SIO_000300: 5.965e1