7-151802506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151802506
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151802506
    reference: chr 7
allele count: 2
allele frequency: 1.697360604260375e-5
allele num: 117830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*186+51G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.469+51G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.712+51G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*186+51G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.712+51G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.712+51G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30073
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5661
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/7-151805092-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805092
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805092
    reference: chr 7
allele count: 1
allele frequency: 8.665811639918195e-6
allele num: 115396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-31C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-31C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.758C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-31C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-31C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-31C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-31C>A
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 30098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-151805096-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805096
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805096
    reference: chr 7
allele count: 1
allele frequency: 8.643490587238751e-6
allele num: 115694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-27C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-27C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-27C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-27C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.762C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-27C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-27C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 94
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/7-151805105-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805105
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805105
    reference: chr 7
allele count: 1
allele frequency: 8.578683686775101e-6
allele num: 116568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.771C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-18C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-18C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-18C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-18C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-18C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-18C>A
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-151805107-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805107
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805107
    reference: chr 7
allele count: 1
allele frequency: 8.566924816667809e-6
allele num: 116728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.773G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-16G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-16G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-16G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-16G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-16G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-16G>C
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-151805110-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805110
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805110
    reference: chr 7
allele count: 1
allele frequency: 8.550077805708033e-6
allele num: 116958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-13G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-13G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-13G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-13G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-13G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.776G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-13G>C
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-151805110-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805110
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805110
    reference: chr 7
allele count: 1
allele frequency: 8.550077805708033e-6
allele num: 116958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-13G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.776G>T
  variant of: http://identifiers.org/hgnc/19875
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/7-151805117-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805117
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805117
    reference: chr 7
allele count: 1
allele frequency: 8.489252606200551e-6
allele num: 117796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.783C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-6C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-6C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-6C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-6C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-6C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-6C>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
hgvs: c.713-6C>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

7-151805118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805118
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805118
    reference: chr 7
allele count: 2
allele frequency: 1.696036363019623e-5
allele num: 117922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*187-5C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.713-5C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.713-5C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.713-5C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.470-5C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.784C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*187-5C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30091
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: c.713-5C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

7-151805125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805125
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805125
    reference: chr 7
allele count: 1
allele frequency: 8.398562166157153e-6
allele num: 119068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*189G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.715G>A
  hgvsp: ENSP00000315835.2:p.Glu239Lys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.715G>A
  hgvsp: ENSP00000395122.2:p.Glu239Lys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*189G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.472G>A
  hgvsp: ENSP00000393399.2:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.715G>A
  hgvsp: ENSP00000416787.1:p.Glu239Lys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.791G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu239Lys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

7-151805130-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805130
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805130
    reference: chr 7
allele count: 45
allele frequency: 3.765627353517096e-4
allele num: 119502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.477C>G
  hgvsp: ENST00000452146.2:c.477C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.796C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*194C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.720C>G
  hgvsp: ENST00000320311.2:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.720C>G
  hgvsp: ENST00000430044.2:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.720C>G
  hgvsp: ENST00000434507.1:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*194C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val240Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

7-151805139-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805139
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805139
    reference: chr 7
allele count: 4
allele frequency: 3.32562895957698e-5
allele num: 120278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.486C>T
  hgvsp: ENST00000452146.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*203C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.729C>T
  hgvsp: ENST00000434507.1:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.805C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*203C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.729C>T
  hgvsp: ENST00000320311.2:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.729C>T
  hgvsp: ENST00000430044.2:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe243Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

7-151805142-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805142
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805142
    reference: chr 7
allele count: 1
allele frequency: 8.298892927683448e-6
allele num: 120498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*206G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.732G>C
  hgvsp: ENST00000430044.2:c.732G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.808G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.732G>C
  hgvsp: ENST00000434507.1:c.732G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.489G>C
  hgvsp: ENST00000452146.2:c.489G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.732G>C
  hgvsp: ENST00000320311.2:c.732G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*206G>C
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu244Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-151805144-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805144
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805144
    reference: chr 7
allele count: 14
allele frequency: 1.170157636950235e-4
allele num: 119642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.810A>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.734A>C
  hgvsp: ENSP00000416787.1:p.Asp245Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.734A>C
  hgvsp: ENSP00000395122.2:p.Asp245Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.491A>C
  hgvsp: ENSP00000393399.2:p.Asp164Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*208A>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*208A>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.734A>C
  hgvsp: ENSP00000315835.2:p.Asp245Ala
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10430
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Asp245Ala
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

7-151805158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805158
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805158
    reference: chr 7
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.748G>A
  hgvsp: ENSP00000315835.2:p.Val250Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.748G>A
  hgvsp: ENSP00000395122.2:p.Val250Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.505G>A
  hgvsp: ENSP00000393399.2:p.Val169Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*222G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*222G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.748G>A
  hgvsp: ENSP00000416787.1:p.Val250Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.824G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29728
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val250Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS

7-151805165-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805165
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805165
    reference: chr 7
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.755T>A
  hgvsp: ENSP00000315835.2:p.Val252Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.512T>A
  hgvsp: ENSP00000393399.2:p.Val171Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.755T>A
  hgvsp: ENSP00000416787.1:p.Val252Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*229T>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.755T>A
  hgvsp: ENSP00000395122.2:p.Val252Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.831T>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*229T>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29705
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val252Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

7-151805173-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805173
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805173
    reference: chr 7
allele count: 32
allele frequency: 2.642226075468582e-4
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.520C>G
  hgvsp: ENSP00000393399.2:p.Leu174Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*237C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.763C>G
  hgvsp: ENSP00000395122.2:p.Leu255Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.763C>G
  hgvsp: ENSP00000416787.1:p.Leu255Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*237C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.763C>G
  hgvsp: ENSP00000315835.2:p.Leu255Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.839C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu255Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

7-151805175-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805175
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805175
    reference: chr 7
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.765G>C
  hgvsp: ENST00000430044.2:c.765G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.522G>C
  hgvsp: ENST00000452146.2:c.522G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.765G>C
  hgvsp: ENST00000434507.1:c.765G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*239G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.765G>C
  hgvsp: ENST00000320311.2:c.765G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*239G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.841G>C
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10945
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu255Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

7-151805185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805185
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805185
    reference: chr 7
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*249C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.532C>T
  hgvsp: ENST00000452146.2:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*249C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.775C>T
  hgvsp: ENST00000320311.2:c.775C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.851C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.775C>T
  hgvsp: ENST00000434507.1:c.775C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.775C>T
  hgvsp: ENST00000430044.2:c.775C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29677
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu259Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

7-151805190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805190
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805190
    reference: chr 7
allele count: 7
allele frequency: 5.773481574345947e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.780C>T
  hgvsp: ENST00000430044.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*254C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.780C>T
  hgvsp: ENST00000434507.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.537C>T
  hgvsp: ENST00000452146.2:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*254C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.780C>T
  hgvsp: ENST00000320311.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.856C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29675
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala260Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

7-151805191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805191
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805191
    reference: chr 7
allele count: 7
allele frequency: 5.775101064268625e-5
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*255G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.857G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.538G>A
  hgvsp: ENSP00000393399.2:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*255G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.781G>A
  hgvsp: ENSP00000395122.2:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.781G>A
  hgvsp: ENSP00000315835.2:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.781G>A
  hgvsp: ENSP00000416787.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11308
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala261Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-151805193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805193
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805193
    reference: chr 7
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.859C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.783C>T
  hgvsp: ENST00000430044.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.540C>T
  hgvsp: ENST00000452146.2:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*257C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*257C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.783C>T
  hgvsp: ENST00000434507.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.783C>T
  hgvsp: ENST00000320311.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala261Ala
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

7-151805197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805197
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805197
    reference: chr 7
allele count: 4
allele frequency: 3.298642608566575e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.787C>T
  hgvsp: ENSP00000395122.2:p.Arg263Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.863C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.787C>T
  hgvsp: ENSP00000416787.1:p.Arg263Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*261C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*261C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.544C>T
  hgvsp: ENSP00000393399.2:p.Arg182Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.787C>T
  hgvsp: ENSP00000315835.2:p.Arg263Cys
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29654
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg263Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-151805198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805198
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805198
    reference: chr 7
allele count: 7
allele frequency: 5.772910206505245e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.545G>A
  hgvsp: ENSP00000393399.2:p.Arg182His
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*262G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.788G>A
  hgvsp: ENSP00000395122.2:p.Arg263His
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.788G>A
  hgvsp: ENSP00000315835.2:p.Arg263His
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.864G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*262G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.788G>A
  hgvsp: ENSP00000416787.1:p.Arg263His
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg263His
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-151805203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805203
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805203
    reference: chr 7
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.550G>T
  hgvsp: ENSP00000393399.2:p.Asp184Tyr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*267G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.793G>T
  hgvsp: ENSP00000395122.2:p.Asp265Tyr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.793G>T
  hgvsp: ENSP00000315835.2:p.Asp265Tyr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.869G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*267G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.793G>T
  hgvsp: ENSP00000416787.1:p.Asp265Tyr
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp265Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-151805205-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805205
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805205
    reference: chr 7
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*269C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.795C>A
  hgvsp: ENSP00000315835.2:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.552C>A
  hgvsp: ENSP00000393399.2:p.Asp184Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.795C>A
  hgvsp: ENSP00000416787.1:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*269C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.871C>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.795C>A
  hgvsp: ENSP00000395122.2:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29661
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp265Glu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-151805206-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805206
    reference: chr 7
allele count: 11
allele frequency: 9.071267173558081e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*270C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.796C>G
  hgvsp: ENSP00000395122.2:p.Arg266Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.796C>G
  hgvsp: ENSP00000416787.1:p.Arg266Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*270C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.796C>G
  hgvsp: ENSP00000315835.2:p.Arg266Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.553C>G
  hgvsp: ENSP00000393399.2:p.Arg185Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.872C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29667
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg266Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

7-151805206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805206
    reference: chr 7
allele count: 4
allele frequency: 3.298642608566575e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.796C>T
  hgvsp: ENSP00000395122.2:p.Arg266Trp
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.796C>T
  hgvsp: ENSP00000416787.1:p.Arg266Trp
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*270C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.553C>T
  hgvsp: ENSP00000393399.2:p.Arg185Trp
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.796C>T
  hgvsp: ENSP00000315835.2:p.Arg266Trp
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*270C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.872C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11484
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg266Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

7-151805207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805207
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805207
    reference: chr 7
allele count: 4
allele frequency: 3.299295600389317e-5
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.797G>A
  hgvsp: ENSP00000395122.2:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.797G>A
  hgvsp: ENSP00000416787.1:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.797G>A
  hgvsp: ENSP00000315835.2:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*271G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.873G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*271G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.554G>A
  hgvsp: ENSP00000393399.2:p.Arg185Gln
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg266Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

7-151805212-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805212
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805212
    reference: chr 7
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.802A>G
  hgvsp: ENSP00000416787.1:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.802A>G
  hgvsp: ENSP00000315835.2:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.802A>G
  hgvsp: ENSP00000395122.2:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*276A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*276A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.559A>G
  hgvsp: ENSP00000393399.2:p.Thr187Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.878A>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr268Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

7-151805214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805214
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805214
    reference: chr 7
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.804C>T
  hgvsp: ENST00000434507.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.880C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.561C>T
  hgvsp: ENST00000452146.2:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.804C>T
  hgvsp: ENST00000320311.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.804C>T
  hgvsp: ENST00000430044.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*278C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29672
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr268Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

7-151805215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805215
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805215
    reference: chr 7
allele count: 18
allele frequency: 1.48451159568502e-4
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*279G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.805G>A
  hgvsp: ENSP00000416787.1:p.Val269Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.805G>A
  hgvsp: ENSP00000315835.2:p.Val269Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.562G>A
  hgvsp: ENSP00000393399.2:p.Val188Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.881G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*279G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.805G>A
  hgvsp: ENSP00000395122.2:p.Val269Met
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29680
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 11578
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val269Met
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-151805222-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805222
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805222
    reference: chr 7
allele count: 2
allele frequency: 1.649185302460584e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*286G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.812G>T
  hgvsp: ENSP00000395122.2:p.Cys271Phe
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*286G>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.812G>T
  hgvsp: ENSP00000416787.1:p.Cys271Phe
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.812G>T
  hgvsp: ENSP00000315835.2:p.Cys271Phe
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.569G>T
  hgvsp: ENSP00000393399.2:p.Cys190Phe
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.888G>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys271Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

7-151805223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805223
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805223
    reference: chr 7
allele count: 2
allele frequency: 1.649022129876983e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.813C>T
  hgvsp: ENST00000434507.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.813C>T
  hgvsp: ENST00000320311.2:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.889C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*287C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.570C>T
  hgvsp: ENST00000452146.2:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.813C>T
  hgvsp: ENST00000430044.2:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*287C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys271Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-151805226-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805226
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805226
    reference: chr 7
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.816A>G
  hgvsp: ENST00000434507.1:c.816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.816A>G
  hgvsp: ENST00000320311.2:c.816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*290A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.892A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.573A>G
  hgvsp: ENST00000452146.2:c.573A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.816A>G
  hgvsp: ENST00000430044.2:c.816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*290A>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29690
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro272Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-151805244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805244
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805244
    reference: chr 7
allele count: 4
allele frequency: 3.296739524610161e-5
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*308C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.910C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*308C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.834C>T
  hgvsp: ENST00000320311.2:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.591C>T
  hgvsp: ENST00000452146.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.834C>T
  hgvsp: ENST00000430044.2:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.834C>T
  hgvsp: ENST00000434507.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser278Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

7-151805245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805245
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805245
    reference: chr 7
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.835G>A
  hgvsp: ENSP00000395122.2:p.Ala279Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.835G>A
  hgvsp: ENSP00000315835.2:p.Ala279Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*309G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.911G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.592G>A
  hgvsp: ENSP00000393399.2:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*309G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.835G>A
  hgvsp: ENSP00000416787.1:p.Ala279Thr
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala279Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

7-151805248-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805248
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805248
    reference: chr 7
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*312G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.914G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.838G>A
  hgvsp: ENSP00000416787.1:p.Asp280Asn
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.838G>A
  hgvsp: ENSP00000395122.2:p.Asp280Asn
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.595G>A
  hgvsp: ENSP00000393399.2:p.Asp199Asn
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*312G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.838G>A
  hgvsp: ENSP00000315835.2:p.Asp280Asn
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp280Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-151805253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805253
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805253
    reference: chr 7
allele count: 22
allele frequency: 1.813146963802993e-4
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.843G>A
  hgvsp: ENST00000434507.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.600G>A
  hgvsp: ENST00000452146.2:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.843G>A
  hgvsp: ENST00000430044.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*317G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*317G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.919G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.843G>A
  hgvsp: ENST00000320311.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr281Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

7-151805259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805259
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805259
    reference: chr 7
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*323C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*323C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.925C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.849C>G
  hgvsp: ENST00000430044.2:c.849C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.849C>G
  hgvsp: ENST00000320311.2:c.849C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.606C>G
  hgvsp: ENST00000452146.2:c.606C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.849C>G
  hgvsp: ENST00000434507.1:c.849C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala283Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

7-151805262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805262
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805262
    reference: chr 7
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.852C>T
  hgvsp: ENST00000320311.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.928C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.852C>T
  hgvsp: ENST00000430044.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.609C>T
  hgvsp: ENST00000452146.2:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*326C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.852C>T
  hgvsp: ENST00000434507.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*326C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr284Tyr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-151805267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805267
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805267
    reference: chr 7
allele count: 4
allele frequency: 3.296087544085171e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*331C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.933C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.857C>T
  hgvsp: ENSP00000315835.2:p.Ser286Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.857C>T
  hgvsp: ENSP00000395122.2:p.Ser286Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.857C>T
  hgvsp: ENSP00000416787.1:p.Ser286Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.614C>T
  hgvsp: ENSP00000393399.2:p.Ser205Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*331C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser286Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-151805268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805268
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805268
    reference: chr 7
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.858G>A
  hgvsp: ENST00000434507.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.858G>A
  hgvsp: ENST00000320311.2:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.858G>A
  hgvsp: ENST00000430044.2:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.934G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*332G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.615G>A
  hgvsp: ENST00000452146.2:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*332G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser286Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

7-151805272-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805272
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805270
    reference: chr 7
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.620_621delCT
  hgvsp: ENSP00000393399.2:p.Pro207ArgfsTer21
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.863_864delCT
  hgvsp: ENSP00000395122.2:p.Pro288ArgfsTer21
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*337_*338delCT
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.863_864delCT
  hgvsp: ENSP00000416787.1:p.Pro288ArgfsTer21
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.863_864delCT
  hgvsp: ENSP00000315835.2:p.Pro288ArgfsTer21
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.939_940delCT
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*337_*338delCT
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29722
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro288ArgfsTer21
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: CCT
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

7-151805276-T-TCGTCCGCGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805285
    reference: chr 7
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: TCGTCCGCGG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.624_632dupCGTCCGCGG
  hgvsp: ENSP00000393399.2:p.Val209_Gly211dup
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.943_951dupCGTCCGCGG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.867_875dupCGTCCGCGG
  hgvsp: ENSP00000416787.1:p.Val290_Gly292dup
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.867_875dupCGTCCGCGG
  hgvsp: ENSP00000315835.2:p.Val290_Gly292dup
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.867_875dupCGTCCGCGG
  hgvsp: ENSP00000395122.2:p.Val290_Gly292dup
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29729
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val290_Gly292dup
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS

7-151805277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805277
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805277
    reference: chr 7
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.867C>T
  hgvsp: ENST00000434507.1:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.867C>T
  hgvsp: ENST00000430044.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.943C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*341C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.624C>T
  hgvsp: ENST00000452146.2:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.867C>T
  hgvsp: ENST00000320311.2:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*341C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val289Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-151805278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805278
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805278
    reference: chr 7
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.625G>A
  hgvsp: ENSP00000393399.2:p.Val209Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*342G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.868G>A
  hgvsp: ENSP00000416787.1:p.Val290Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.868G>A
  hgvsp: ENSP00000395122.2:p.Val290Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.868G>A
  hgvsp: ENSP00000315835.2:p.Val290Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*342G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.944G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val290Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-151805281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805281
    reference: chr 7
allele count: 8
allele frequency: 6.591631923273405e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.871C>T
  hgvsp: ENSP00000395122.2:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.628C>T
  hgvsp: ENSP00000393399.2:p.Arg210Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*345C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.871C>T
  hgvsp: ENSP00000315835.2:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*345C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.871C>T
  hgvsp: ENSP00000416787.1:p.Arg291Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.947C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg291Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

7-151805283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805283
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805283
    reference: chr 7
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.873C>T
  hgvsp: ENST00000320311.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.949C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*347C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.873C>T
  hgvsp: ENST00000430044.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.873C>T
  hgvsp: ENST00000434507.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.630C>T
  hgvsp: ENST00000452146.2:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*347C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg291Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-151805292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805292
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805292
    reference: chr 7
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*356C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.882C>T
  hgvsp: ENST00000320311.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.639C>T
  hgvsp: ENST00000452146.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*356C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.882C>T
  hgvsp: ENST00000430044.2:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.958C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.882C>T
  hgvsp: ENST00000434507.1:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe294Phe
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-151805294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805294
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805294
    reference: chr 7
allele count: 37
allele frequency: 3.048629764513949e-4
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.960A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.884A>G
  hgvsp: ENSP00000416787.1:p.Asn295Ser
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*358A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*358A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.641A>G
  hgvsp: ENSP00000393399.2:p.Asn214Ser
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.884A>G
  hgvsp: ENSP00000395122.2:p.Asn295Ser
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.884A>G
  hgvsp: ENSP00000315835.2:p.Asn295Ser
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn295Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

7-151805294-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805294
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805294
    reference: chr 7
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.641A>T
  hgvsp: ENSP00000393399.2:p.Asn214Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*358A>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.884A>T
  hgvsp: ENSP00000315835.2:p.Asn295Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*358A>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.884A>T
  hgvsp: ENSP00000395122.2:p.Asn295Ile
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.960A>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.884A>T
  hgvsp: ENSP00000416787.1:p.Asn295Ile
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29763
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn295Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-151805300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805300
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805300
    reference: chr 7
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*364G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.966G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.890G>C
  hgvsp: ENSP00000315835.2:p.Gly297Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*364G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.647G>C
  hgvsp: ENSP00000393399.2:p.Gly216Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.890G>C
  hgvsp: ENSP00000395122.2:p.Gly297Ala
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.890G>C
  hgvsp: ENSP00000416787.1:p.Gly297Ala
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly297Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-151805328-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805328
    reference: chr 7
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.918C>G
  hgvsp: ENST00000320311.2:c.918C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.675C>G
  hgvsp: ENST00000452146.2:c.675C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.918C>G
  hgvsp: ENST00000430044.2:c.918C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.918C>G
  hgvsp: ENST00000434507.1:c.918C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*392C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*392C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.994C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro306Pro
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

7-151805332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805332
    reference: chr 7
allele count: 11
allele frequency: 9.072464246243175e-5
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*396T>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.679T>C
  hgvsp: ENSP00000393399.2:p.Ser227Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.922T>C
  hgvsp: ENSP00000315835.2:p.Ser308Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.922T>C
  hgvsp: ENSP00000395122.2:p.Ser308Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.998T>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.922T>C
  hgvsp: ENSP00000416787.1:p.Ser308Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*396T>C
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser308Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-151805333-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805333
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805333
    reference: chr 7
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.923C>G
  hgvsp: ENSP00000416787.1:p.Ser308Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.923C>G
  hgvsp: ENSP00000395122.2:p.Ser308Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.999C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*397C>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.923C>G
  hgvsp: ENSP00000315835.2:p.Ser308Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.680C>G
  hgvsp: ENSP00000393399.2:p.Ser227Cys
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*397C>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser308Cys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-151805341-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805341
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805341
    reference: chr 7
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*405G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.931G>C
  hgvsp: ENSP00000395122.2:p.Gly311Arg
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.931G>C
  hgvsp: ENSP00000315835.2:p.Gly311Arg
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*405G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.931G>C
  hgvsp: ENSP00000416787.1:p.Gly311Arg
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1007G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.688G>C
  hgvsp: ENSP00000393399.2:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly311Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

7-151805344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805344
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805344
    reference: chr 7
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.934C>T
  hgvsp: ENSP00000315835.2:p.Arg312Ter
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*408C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.934C>T
  hgvsp: ENSP00000416787.1:p.Arg312Ter
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.691C>T
  hgvsp: ENSP00000393399.2:p.Arg231Ter
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.934C>T
  hgvsp: ENSP00000395122.2:p.Arg312Ter
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1010C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*408C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29742
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg312Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-151805345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805345
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805345
    reference: chr 7
allele count: 3
allele frequency: 2.482005460412013e-5
allele num: 120870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.935G>A
  hgvsp: ENSP00000395122.2:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.935G>A
  hgvsp: ENSP00000416787.1:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*409G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.692G>A
  hgvsp: ENSP00000393399.2:p.Arg231Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*409G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.935G>A
  hgvsp: ENSP00000315835.2:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1011G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg312Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

7-151805345-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805345
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805345
    reference: chr 7
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.935G>C
  hgvsp: ENSP00000416787.1:p.Arg312Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*409G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1011G>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.935G>C
  hgvsp: ENSP00000315835.2:p.Arg312Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.935G>C
  hgvsp: ENSP00000395122.2:p.Arg312Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.692G>C
  hgvsp: ENSP00000393399.2:p.Arg231Pro
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*409G>C
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg312Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

7-151805348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805348
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805348
    reference: chr 7
allele count: 3
allele frequency: 2.483525944567701e-5
allele num: 120796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.938C>T
  hgvsp: ENSP00000315835.2:p.Ala313Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.695C>T
  hgvsp: ENSP00000393399.2:p.Ala232Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.938C>T
  hgvsp: ENSP00000395122.2:p.Ala313Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*412C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1014C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*412C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.938C>T
  hgvsp: ENSP00000416787.1:p.Ala313Val
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala313Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

7-151805349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805349
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805349
    reference: chr 7
allele count: 4
allele frequency: 3.31087456751701e-5
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.939G>A
  hgvsp: ENST00000320311.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.939G>A
  hgvsp: ENST00000430044.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1015G>A
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.939G>A
  hgvsp: ENST00000434507.1:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.696G>A
  hgvsp: ENST00000452146.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*413G>A
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala313Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

7-151805351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805351
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805351
    reference: chr 7
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*415A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*415A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.941A>G
  hgvsp: ENSP00000416787.1:p.Glu314Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.941A>G
  hgvsp: ENSP00000395122.2:p.Glu314Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.698A>G
  hgvsp: ENSP00000393399.2:p.Glu233Gly
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1017A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.941A>G
  hgvsp: ENSP00000315835.2:p.Glu314Gly
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu314Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

7-151805354-GAGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805354
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805351
    reference: chr 7
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*419_*421delAGC
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.945_947delAGC
  hgvsp: ENSP00000315835.2:p.Ala316del
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.702_704delAGC
  hgvsp: ENSP00000393399.2:p.Ala235del
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1021_1023delAGC
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.945_947delAGC
  hgvsp: ENSP00000416787.1:p.Ala316del
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.945_947delAGC
  hgvsp: ENSP00000395122.2:p.Ala316del
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*419_*421delAGC
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29739
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala316del
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: GAGC
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

7-151805357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805357
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805357
    reference: chr 7
allele count: 1
allele frequency: 8.30592378484335e-6
allele num: 120396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*421C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.947C>T
  hgvsp: ENSP00000395122.2:p.Ala316Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*421C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.704C>T
  hgvsp: ENSP00000393399.2:p.Ala235Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.947C>T
  hgvsp: ENSP00000315835.2:p.Ala316Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.947C>T
  hgvsp: ENSP00000416787.1:p.Ala316Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1023C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala316Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

7-151805361-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805361
    reference: chr 7
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.951T>C
  hgvsp: ENST00000434507.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.708T>C
  hgvsp: ENST00000452146.2:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*425T>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.951T>C
  hgvsp: ENST00000320311.2:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*425T>C
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.951T>C
  hgvsp: ENST00000430044.2:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1027T>C
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29740
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr317Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

7-151805361-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805361
    reference: chr 7
allele count: 2
allele frequency: 1.663284654535777e-5
allele num: 120244
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.951T>G
  hgvsp: ENST00000434507.1:c.951T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*425T>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*425T>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1027T>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.951T>G
  hgvsp: ENST00000320311.2:c.951T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.708T>G
  hgvsp: ENST00000452146.2:c.708T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.951T>G
  hgvsp: ENST00000430044.2:c.951T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29740
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr317Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

7-151805366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805366
    reference: chr 7
allele count: 2
allele frequency: 1.668307168715904e-5
allele num: 119882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.956C>T
  hgvsp: ENSP00000315835.2:p.Pro319Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.956C>T
  hgvsp: ENSP00000416787.1:p.Pro319Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*430C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.956C>T
  hgvsp: ENSP00000395122.2:p.Pro319Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.713C>T
  hgvsp: ENSP00000393399.2:p.Pro238Leu
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1032C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*430C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29739
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro319Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

7-151805368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805368
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805368
    reference: chr 7
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1034A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.958A>G
  hgvsp: ENSP00000416787.1:p.Ile320Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*432A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.958A>G
  hgvsp: ENSP00000395122.2:p.Ile320Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.958A>G
  hgvsp: ENSP00000315835.2:p.Ile320Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.715A>G
  hgvsp: ENSP00000393399.2:p.Ile239Val
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*432A>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile320Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

7-151805370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805370
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805370
    reference: chr 7
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.960A>G
  hgvsp: ENSP00000416787.1:p.Ile320Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*434A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.960A>G
  hgvsp: ENSP00000315835.2:p.Ile320Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1036A>G
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.717A>G
  hgvsp: ENSP00000393399.2:p.Ile239Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.960A>G
  hgvsp: ENSP00000395122.2:p.Ile320Met
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*434A>G
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile320Met
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-151805370-AAAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805370
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805366
    reference: chr 7
allele count: 2
allele frequency: 1.672073036150219e-5
allele num: 119612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*436+2_*436+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1038+2_1038+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.962+2_962+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.962+2_962+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000389449
  ensembl transcript: ENST00000422997
  gene symbol: GALNT11
  hgvsc: ENST00000422997.2:c.*435_*438delAAGT
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.719+2_719+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.962+2_962+5delTAAG
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
hgvs: c.962+2_962+5delTAAG
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: AAAGT
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-151805380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 151805380
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 151805380
    reference: chr 7
allele count: 1
allele frequency: 8.416658250008417e-6
allele num: 118812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000315835
  ensembl transcript: ENST00000320311
  gene symbol: GALNT11
  hgvsc: ENST00000320311.2:c.962+8C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000416787
  ensembl transcript: ENST00000434507
  gene symbol: GALNT11
  hgvsc: ENST00000434507.1:c.962+8C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000393399
  ensembl transcript: ENST00000452146
  gene symbol: GALNT11
  hgvsc: ENST00000452146.2:c.719+8C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395122
  ensembl transcript: ENST00000430044
  gene symbol: GALNT11
  hgvsc: ENST00000430044.2:c.962+8C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178234
  ensembl transcript: ENST00000491061
  gene symbol: GALNT11
  hgvsc: ENST00000491061.1:n.1038+8C>T
  variant of: http://identifiers.org/hgnc/19875
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000178234
  ensembl protein: ENSP00000395078
  ensembl transcript: ENST00000447778
  gene symbol: GALNT11
  hgvsc: ENST00000447778.1:c.*436+8C>T
  variant of: http://identifiers.org/hgnc/19875
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 6.25e1
  variant carriers: 0
hgvs: c.962+8C>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.099247479767145e-5
allele num: 14086
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.441863e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.306e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 2.752e0

GenotypeQuality
all individuals: 2467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6661
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535720867375146e-5
allele num: 65116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.48624e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.591e0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30098
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533695285420693e-5
allele num: 65202
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.48952e6

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.599e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.43e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: -9.75e-2

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7658
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.94e0

VQSLOD
type: SiteQuality
SIO_000300: -1.267e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

DP
type: SiteQuality
SIO_000300: 2.500432e6

FS
type: SiteQuality
SIO_000300: 9.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.862e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30090
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.502978e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeQuality
all individuals: 30092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526484506182262e-5
allele num: 65510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.752e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.019e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.505995e6

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526484506182262e-5
allele num: 65510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.505995e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

FS
type: SiteQuality
SIO_000300: 6.752e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521282745611099e-5
allele num: 65734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.515941e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 3.989e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.049e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 8739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041270034366351e-5
allele num: 65762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.438e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.51798e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.375e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3363
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variant carriers: 0

GenotypeQuality
all individuals: 30091
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.879e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.835e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 2.529183e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 45

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 177
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variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.441189806837762e-4
allele num: 66162
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.461405330564209e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.547073458164201e-5
allele num: 15274
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.534947e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.275e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 637
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variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.025003765627353e-5
allele num: 66390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 2.599e0

QD
type: SiteQuality
SIO_000300: 1.022e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.543338e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.039e0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.817e0

QD
type: SiteQuality
SIO_000300: 1.001e1

DP
type: SiteQuality
SIO_000300: 2.545962e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 2

GenotypeQuality
all individuals: 181
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variant carriers: 2

GenotypeQuality
all individuals: 3250
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 3126
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GenotypeQuality
all individuals: 2338
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variant carriers: 1

GenotypeQuality
all individuals: 178
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variant carriers: 1

GenotypeQuality
all individuals: 3355
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.128911138923655e-4
allele num: 6392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.516254245511887e-4
allele num: 65952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.961938395134393e-4
allele num: 10194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.938e2

DP
type: SiteQuality
SIO_000300: 2.550664e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 2.05206e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.259e0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3395
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.385e0

DP
type: SiteQuality
SIO_000300: 2.548511e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 2.03e1

FS
type: SiteQuality
SIO_000300: 1.225e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3919
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
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South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.542721e6

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 7.525e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3367
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
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African
type: Population
allele count: 31
allele frequency: 2.980196116131513e-3
allele num: 10402
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.539281e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

FS
type: SiteQuality
SIO_000300: 1.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

GenotypeQuality
all individuals: 2383
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.515e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.535927e6

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.644e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.99e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.531126e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

GenotypeQuality
all individuals: 278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001200480192077e-5
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.032876379958753e-4
allele num: 16486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

FS
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.26e1

DP
type: SiteQuality
SIO_000300: 2.533083e6

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29663
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 2.533973e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29684
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

DP
type: SiteQuality
SIO_000300: 2.535417e6

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 3154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11449
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000570108320581e-5
allele num: 66654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

FS
type: SiteQuality
SIO_000300: 1.655e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 2.532852e6

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29658
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.848374061958822e-4
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000570108320581e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.148e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 2.532401e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
all individuals: 2342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.531875e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.753e0

FS
type: SiteQuality
SIO_000300: 1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

VQSLOD
type: SiteQuality
SIO_000300: -6.192e-1

QD
type: SiteQuality
SIO_000300: 1.111e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.954e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

DP
type: SiteQuality
SIO_000300: 2.531254e6

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 11484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.733358984224702e-4
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500990217847926e-5
allele num: 66652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

DP
type: SiteQuality
SIO_000300: 2.531722e6

QD
type: SiteQuality
SIO_000300: 1.419e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29667
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 3
allele frequency: 2.595604775912787e-4
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.419e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.531722e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.002400960384154e-5
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 2.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

DP
type: SiteQuality
SIO_000300: 2.530938e6

QD
type: SiteQuality
SIO_000300: 1.731e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

FS
type: SiteQuality
SIO_000300: 1.132e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.531169e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.682e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.531653e6

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.0538e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 3199
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3848
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.700756211739287e-4
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.532042e6

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3866
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 11700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2442
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variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.532826e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.626e1

QD
type: SiteQuality
SIO_000300: 1.515e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.443e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.917e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 2.533295e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 2.534205e6

QD
type: SiteQuality
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Other
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allele count: 0
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allele num: 908
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
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allele num: 8644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -7.99e-1

QD
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DP
type: SiteQuality
SIO_000300: 2.537635e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.412e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

FS
type: SiteQuality
SIO_000300: 2.004e0

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 2.538561e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 1.923076923076923e-3
allele num: 10400
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66694
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

Other
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.968e1

DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.769e0

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.084e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.436e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.94e-1

DP
type: SiteQuality
SIO_000300: 2.539989e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.540109e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele num: 10398
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
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European (Non-Finnish)
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allele frequency: 2.997871511227029e-5
allele num: 66714
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East Asian
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FS
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49667246237784e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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MQRankSum
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SIO_000300: -5.5e-2

InbreedingCoeff
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FS
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SIO_000300: 3.691e0

QD
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DP
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 5.580000000000001e-1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049223574554829e-4
allele num: 66716
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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SIO_000300: 1.442e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.415e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
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DP
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SIO_000300: 2.541438e6

VQSLOD
type: SiteQuality
SIO_000300: -2.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
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SIO_000300: 2.08e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.77e-1

DP
type: SiteQuality
SIO_000300: 2.541466e6

FS
type: SiteQuality
SIO_000300: 1.125e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 31
allele frequency: 1.877877392779259e-3
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.543298e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele num: 16504
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FS
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

DP
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.499925003749812e-4
allele num: 66670
num of homozygotes: 0

South Asian
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East Asian
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Latino
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African
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Other
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QD
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MQ
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

FS
type: SiteQuality
SIO_000300: 2.738e0

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.282e1

DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.559e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.219e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.535566e6

MQ
type: SiteQuality
SIO_000300: 5.804e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 9.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
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African
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allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16264
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.7e-1

DP
type: SiteQuality
SIO_000300: 2.534475e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004627125773691e-5
allele num: 66564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

DP
type: SiteQuality
SIO_000300: 2.532658e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.117e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

DP
type: SiteQuality
SIO_000300: 2.532658e6

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3414
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.188884762965714e-5
allele num: 16158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.006253006253006e-5
allele num: 66528
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
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allele num: 10382
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 1.6163e1

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.531919e6

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.531718e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

East Asian
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South Asian
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Other
type: Population
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FS
type: SiteQuality
SIO_000300: 3.426e0

MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.2375249500998e-5
allele num: 16032
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Latino
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East Asian
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European (Non-Finnish)
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allele num: 66494
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African
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Other
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MQRankSum
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DP
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.79e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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East Asian
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South Asian
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Other
type: Population
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Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.325e0

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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QD
type: SiteQuality
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.341154090044388e-5
allele num: 15770
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.977e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.061e0

ClippingRankSum
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SIO_000300: 7.27e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 2.521457e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.104e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.268230818008878e-4
allele num: 15770
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.977e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
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SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.104e0

DP
type: SiteQuality
SIO_000300: 2.521457e6

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.016227302889546e-5
allele num: 66308
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.196e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.912e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 2.514793e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8638
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15344
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.262e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.95e0

DP
type: SiteQuality
SIO_000300: 2.507506e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 1.927e0

DP
type: SiteQuality
SIO_000300: 2.507409e6

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.768e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019232511095679e-5
allele num: 66242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15336
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 890
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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FS
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2