8-142200358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200358
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200358
    reference: chr 8
allele count: 1
allele frequency: 9.012256669069936e-6
allele num: 110960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-25G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-25G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

8-142200360-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200360
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200360
    reference: chr 8
allele count: 1
allele frequency: 8.621135575978068e-6
allele num: 115994
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-23G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-23G>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
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genotype quality: GenotypeQuality
  all individuals: 5783
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genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22185
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-142200364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200364
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200364
    reference: chr 8
allele count: 1
allele frequency: 8.6071852782703e-6
allele num: 116182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-19G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-19G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 506
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

8-142200365-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200365
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200365
    reference: chr 8
allele count: 2
allele frequency: 1.720666930502263e-5
allele num: 116234
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-18T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-18T>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1930
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

8-142200368-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200368
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200368
    reference: chr 8
allele count: 1
allele frequency: 8.609260120185271e-6
allele num: 116154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-15G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-15G>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11099
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22185
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

8-142200374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200374
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200374
    reference: chr 8
allele count: 1
allele frequency: 8.580155815629612e-6
allele num: 116548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2850-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.156-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.953-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3006-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3019-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.250-9T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3246-9T>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

8-142200386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200386
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200386
    reference: chr 8
allele count: 2
allele frequency: 1.699668564629897e-5
allele num: 117670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3022C>T
  hgvsp: ENST00000518668.1:c.3022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2853C>T
  hgvsp: ENST00000424248.1:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.956C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3249C>T
  hgvsp: ENST00000519811.1:c.3249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.159C>T
  hgvsp: ENST00000523308.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.253C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3009C>T
  hgvsp: ENST00000262585.2:c.3009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16031
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn1003Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

8-142200394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200394
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200394
    reference: chr 8
allele count: 9
allele frequency: 7.58571862041064e-5
allele num: 118644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.964C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3030C>T
  hgvsp: ENSP00000428276.1:p.Ser1011Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2861C>T
  hgvsp: ENSP00000410594.1:p.Ser954Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3017C>T
  hgvsp: ENSP00000262585.2:p.Ser1006Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3257C>T
  hgvsp: ENSP00000428714.1:p.Ser1086Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.167C>T
  hgvsp: ENSP00000430912.1:p.Ser56Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.261C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22182
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser1006Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

8-142200395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200395
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200395
    reference: chr 8
allele count: 11
allele frequency: 9.254429506486513e-5
allele num: 118862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.262G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2862G>A
  hgvsp: ENST00000424248.1:c.2862G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.965G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3018G>A
  hgvsp: ENST00000262585.2:c.3018G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3258G>A
  hgvsp: ENST00000519811.1:c.3258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3031G>A
  hgvsp: ENST00000518668.1:c.3031G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.168G>A
  hgvsp: ENST00000523308.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1006Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

8-142200396-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200396
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200396
    reference: chr 8
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.169T>A
  hgvsp: ENSP00000430912.1:p.Cys57Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2863T>A
  hgvsp: ENSP00000410594.1:p.Cys955Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.263T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.966T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3032T>A
  hgvsp: ENSP00000428276.1:p.Cys1012Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3019T>A
  hgvsp: ENSP00000262585.2:p.Cys1007Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3259T>A
  hgvsp: ENSP00000428714.1:p.Cys1087Ser
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys1007Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

8-142200407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200407
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200407
    reference: chr 8
allele count: 10
allele frequency: 8.336251021190751e-5
allele num: 119958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3270C>T
  hgvsp: ENST00000519811.1:c.3270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2874C>T
  hgvsp: ENST00000424248.1:c.2874C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3043C>T
  hgvsp: ENST00000518668.1:c.3043C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.977C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.274C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.180C>T
  hgvsp: ENST00000523308.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3030C>T
  hgvsp: ENST00000262585.2:c.3030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1010Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-142200408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200408
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200408
    reference: chr 8
allele count: 6
allele frequency: 4.994838666711065e-5
allele num: 120124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.181G>A
  hgvsp: ENSP00000430912.1:p.Gly61Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3044G>A
  hgvsp: ENSP00000428276.1:p.Gly1016Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3031G>A
  hgvsp: ENSP00000262585.2:p.Gly1011Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2875G>A
  hgvsp: ENSP00000410594.1:p.Gly959Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3271G>A
  hgvsp: ENSP00000428714.1:p.Gly1091Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.275G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.978G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1011Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

8-142200410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200410
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200410
    reference: chr 8
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3046C>T
  hgvsp: ENST00000518668.1:c.3046C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3273C>T
  hgvsp: ENST00000519811.1:c.3273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.277C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.183C>T
  hgvsp: ENST00000523308.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2877C>T
  hgvsp: ENST00000424248.1:c.2877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3033C>T
  hgvsp: ENST00000262585.2:c.3033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.980C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1011Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

8-142200411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200411
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200411
    reference: chr 8
allele count: 83
allele frequency: 6.898271276595745e-4
allele num: 120320
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3034A>G
  hgvsp: ENSP00000262585.2:p.Met1012Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3047A>G
  hgvsp: ENSP00000428276.1:p.Met1017Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.184A>G
  hgvsp: ENSP00000430912.1:p.Met62Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3274A>G
  hgvsp: ENSP00000428714.1:p.Met1092Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.278A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.981A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2878A>G
  hgvsp: ENSP00000410594.1:p.Met960Val
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1012Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-142200414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200414
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200414
    reference: chr 8
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3277G>A
  hgvsp: ENSP00000428714.1:p.Val1093Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3050G>A
  hgvsp: ENSP00000428276.1:p.Val1018Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.984G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3037G>A
  hgvsp: ENSP00000262585.2:p.Val1013Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.187G>A
  hgvsp: ENSP00000430912.1:p.Val63Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2881G>A
  hgvsp: ENSP00000410594.1:p.Val961Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.281G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val1013Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

8-142200436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200436
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200436
    reference: chr 8
allele count: 16
allele frequency: 1.325446924134732e-4
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.209C>T
  hgvsp: ENSP00000430912.1:p.Thr70Ile
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3299C>T
  hgvsp: ENSP00000428714.1:p.Thr1100Ile
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3072C>T
  hgvsp: ENSP00000428276.1:p.Thr1025Ile
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1006C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.303C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3059C>T
  hgvsp: ENSP00000262585.2:p.Thr1020Ile
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2903C>T
  hgvsp: ENSP00000410594.1:p.Thr968Ile
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1020Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

8-142200437-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200437
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200437
    reference: chr 8
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.210A>G
  hgvsp: ENST00000523308.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3300A>G
  hgvsp: ENST00000519811.1:c.3300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.304A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3073A>G
  hgvsp: ENST00000518668.1:c.3073A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2904A>G
  hgvsp: ENST00000424248.1:c.2904A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3060A>G
  hgvsp: ENST00000262585.2:c.3060A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1007A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1020Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-142200447-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200447
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200447
    reference: chr 8
allele count: 13
allele frequency: 1.087320173971228e-4
allele num: 119560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2914A>C
  hgvsp: ENSP00000410594.1:p.Thr972Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3070A>C
  hgvsp: ENSP00000262585.2:p.Thr1024Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1017A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.314A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3083A>C
  hgvsp: ENSP00000428276.1:p.Thr1029Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3310A>C
  hgvsp: ENSP00000428714.1:p.Thr1104Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.220A>C
  hgvsp: ENSP00000430912.1:p.Thr74Pro
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7099
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21922
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Thr1024Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-142200453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200453
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200453
    reference: chr 8
allele count: 2
allele frequency: 1.659392994042779e-5
allele num: 120526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.320C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.226C>T
  hgvsp: ENSP00000430912.1:p.Arg76Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3076C>T
  hgvsp: ENSP00000262585.2:p.Arg1026Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1023C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3316C>T
  hgvsp: ENSP00000428714.1:p.Arg1106Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3089C>T
  hgvsp: ENSP00000428276.1:p.Arg1031Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2920C>T
  hgvsp: ENSP00000410594.1:p.Arg974Cys
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1026Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-142200454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200454
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200454
    reference: chr 8
allele count: 15
allele frequency: 1.245081926390757e-4
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2921G>A
  hgvsp: ENSP00000410594.1:p.Arg974His
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.321G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3077G>A
  hgvsp: ENSP00000262585.2:p.Arg1026His
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.227G>A
  hgvsp: ENSP00000430912.1:p.Arg76His
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3090G>A
  hgvsp: ENSP00000428276.1:p.Arg1031His
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3317G>A
  hgvsp: ENSP00000428714.1:p.Arg1106His
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1024G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1026His
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

8-142200466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200466
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200466
    reference: chr 8
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3102C>T
  hgvsp: ENSP00000428276.1:p.Pro1035Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1036C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3089C>T
  hgvsp: ENSP00000262585.2:p.Pro1030Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2933C>T
  hgvsp: ENSP00000410594.1:p.Pro978Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3329C>T
  hgvsp: ENSP00000428714.1:p.Pro1110Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.239C>T
  hgvsp: ENSP00000430912.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.333C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro1030Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

8-142200467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200467
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200467
    reference: chr 8
allele count: 40407
allele frequency: 3.357959644982216e-1
allele num: 120332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3330G>A
  hgvsp: ENST00000519811.1:c.3330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3103G>A
  hgvsp: ENST00000518668.1:c.3103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2934G>A
  hgvsp: ENST00000424248.1:c.2934G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1037G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.240G>A
  hgvsp: ENST00000523308.1:c.240G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3090G>A
  hgvsp: ENST00000262585.2:c.3090G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.334G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 1956
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 4.75e1
  variant carriers: 2855
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 5.25e1
  variant carriers: 3118
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 3.25e1
  variant carriers: 1349
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 11426
  bin: 2.75e1
  variant carriers: 972
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.25e1
  variant carriers: 833
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.75e1
  variant carriers: 1894
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 8.25e1
  variant carriers: 1549
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 5.75e1
  variant carriers: 3167
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.75e1
  variant carriers: 1152
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 3017
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 2815
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 2397
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.25e1
  variant carriers: 2400
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 9.75e1
  variant carriers: 2003
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 654
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 6.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 33631
  bin: 9.75e1
  variant carriers: 31620
hgvs: p.Pro1030Pro
num of homozygotes: 7625
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

8-142200467-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200467
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200467
    reference: chr 8
allele count: 107
allele frequency: 8.892065286041951e-4
allele num: 120332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3330G>C
  hgvsp: ENST00000519811.1:c.3330G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3103G>C
  hgvsp: ENST00000518668.1:c.3103G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3090G>C
  hgvsp: ENST00000262585.2:c.3090G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.240G>C
  hgvsp: ENST00000523308.1:c.240G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.334G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2934G>C
  hgvsp: ENST00000424248.1:c.2934G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1037G>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11426
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1030Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

8-142200469-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200469
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200469
    reference: chr 8
allele count: 2
allele frequency: 1.666972278251013e-5
allele num: 119978
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3092G>A
  hgvsp: ENSP00000262585.2:p.Arg1031Gln
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3105G>A
  hgvsp: ENSP00000428276.1:p.Arg1036Gln
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.242G>A
  hgvsp: ENSP00000430912.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1039G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.336G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3332G>A
  hgvsp: ENSP00000428714.1:p.Arg1111Gln
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2936G>A
  hgvsp: ENSP00000410594.1:p.Arg979Gln
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13975
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg1031Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/8-142200470-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200470
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200470
    reference: chr 8
allele count: 1
allele frequency: 8.335139280177371e-6
allele num: 119974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2937A>C
  hgvsp: ENST00000424248.1:c.2937A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3093A>C
  hgvsp: ENST00000262585.2:c.3093A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.243A>C
  hgvsp: ENST00000523308.1:c.243A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3333A>C
  hgvsp: ENST00000519811.1:c.3333A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3106A>C
  hgvsp: ENST00000518668.1:c.3106A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1040A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.337A>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9681
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1031Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-142200476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200476
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200476
    reference: chr 8
allele count: 3
allele frequency: 2.504257237303416e-5
allele num: 119796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2943C>T
  hgvsp: ENST00000424248.1:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.343C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.249C>T
  hgvsp: ENST00000523308.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1046C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3099C>T
  hgvsp: ENST00000262585.2:c.3099C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3112C>T
  hgvsp: ENST00000518668.1:c.3112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3339C>T
  hgvsp: ENST00000519811.1:c.3339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31183
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly1033Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

8-142200481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200481
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200481
    reference: chr 8
allele count: 1
allele frequency: 8.364980844193866e-6
allele num: 119546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3117C>T
  hgvsp: ENSP00000428276.1:p.Thr1040Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1051C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.254C>T
  hgvsp: ENSP00000430912.1:p.Thr85Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2948C>T
  hgvsp: ENSP00000410594.1:p.Thr983Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3104C>T
  hgvsp: ENSP00000262585.2:p.Thr1035Met
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.348C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3344C>T
  hgvsp: ENSP00000428714.1:p.Thr1115Met
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1035Met
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

8-142200482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200482
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200482
    reference: chr 8
allele count: 3
allele frequency: 2.510796424625891e-5
allele num: 119484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3345G>A
  hgvsp: ENST00000519811.1:c.3345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2949G>A
  hgvsp: ENST00000424248.1:c.2949G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1052G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.255G>A
  hgvsp: ENST00000523308.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.349G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3118G>A
  hgvsp: ENST00000518668.1:c.3118G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3105G>A
  hgvsp: ENST00000262585.2:c.3105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13733
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3632
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1035Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

8-142200486-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200486
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200486
    reference: chr 8
allele count: 1
allele frequency: 8.395318770253707e-6
allele num: 119114
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3109A>G
  hgvsp: ENSP00000262585.2:p.Ile1037Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3349A>G
  hgvsp: ENSP00000428714.1:p.Ile1117Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2953A>G
  hgvsp: ENSP00000410594.1:p.Ile985Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1056A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.259A>G
  hgvsp: ENSP00000430912.1:p.Ile87Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3122A>G
  hgvsp: ENSP00000428276.1:p.Ile1042Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.353A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile1037Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

8-142200493-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200493
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200493
    reference: chr 8
allele count: 1
allele frequency: 8.475581848693913e-6
allele num: 117986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.360T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2960T>C
  hgvsp: ENSP00000410594.1:p.Leu987Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1063T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3116T>C
  hgvsp: ENSP00000262585.2:p.Leu1039Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3129T>C
  hgvsp: ENSP00000428276.1:p.Leu1044Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3356T>C
  hgvsp: ENSP00000428714.1:p.Leu1119Pro
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.266T>C
  hgvsp: ENSP00000430912.1:p.Leu89Pro
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu1039Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

8-142200497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200497
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200497
    reference: chr 8
allele count: 11
allele frequency: 9.480797076466938e-5
allele num: 116024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3133C>T
  hgvsp: ENST00000518668.1:c.3133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2964C>T
  hgvsp: ENST00000424248.1:c.2964C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3360C>T
  hgvsp: ENST00000519811.1:c.3360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.270C>T
  hgvsp: ENST00000523308.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3120C>T
  hgvsp: ENST00000262585.2:c.3120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.364C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1067C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His1040His
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

8-142200498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200498
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200498
    reference: chr 8
allele count: 4
allele frequency: 3.425185388159134e-5
allele num: 116782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3361G>A
  hgvsp: ENSP00000428714.1:p.Gly1121Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1068G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.365G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.271G>A
  hgvsp: ENSP00000430912.1:p.Gly91Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3134G>A
  hgvsp: ENSP00000428276.1:p.Gly1046Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2965G>A
  hgvsp: ENSP00000410594.1:p.Gly989Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3121G>A
  hgvsp: ENSP00000262585.2:p.Gly1041Ser
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1041Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/8-142200500-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200500
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200500
    reference: chr 8
allele count: 2
allele frequency: 1.717740827263983e-5
allele num: 116432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3363C>A
  hgvsp: ENST00000519811.1:c.3363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3123C>A
  hgvsp: ENST00000262585.2:c.3123C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3136C>A
  hgvsp: ENST00000518668.1:c.3136C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.367C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2967C>A
  hgvsp: ENST00000424248.1:c.2967C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.273C>A
  hgvsp: ENST00000523308.1:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1070C>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1041Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

8-142200504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200504
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200504
    reference: chr 8
allele count: 3
allele frequency: 2.557457546204733e-5
allele num: 117304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1074C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3367C>T
  hgvsp: ENSP00000428714.1:p.Arg1123Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.277C>T
  hgvsp: ENSP00000430912.1:p.Arg93Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3140C>T
  hgvsp: ENSP00000428276.1:p.Arg1048Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.371C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2971C>T
  hgvsp: ENSP00000410594.1:p.Arg991Cys
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3127C>T
  hgvsp: ENSP00000262585.2:p.Arg1043Cys
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1043Cys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

8-142200515-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200515
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200514
    reference: chr 8
allele count: 1
allele frequency: 8.588704136319913e-6
allele num: 116432
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139delT
  hgvsp: ENSP00000262585.2:p.Cys1047AlafsTer9
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289delT
  hgvsp: ENSP00000430912.1:p.Cys97AlafsTer9
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983delT
  hgvsp: ENSP00000410594.1:p.Cys995AlafsTer9
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152delT
  hgvsp: ENSP00000428276.1:p.Cys1052AlafsTer9
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379delT
  hgvsp: ENSP00000428714.1:p.Cys1127AlafsTer9
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.383delT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086delT
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12387
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys1047AlafsTer9
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: CT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

8-142200516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200516
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200516
    reference: chr 8
allele count: 3
allele frequency: 2.577186742951394e-5
allele num: 116406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086T>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379T>C
  hgvsp: ENSP00000428714.1:p.Cys1127Arg
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139T>C
  hgvsp: ENSP00000262585.2:p.Cys1047Arg
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983T>C
  hgvsp: ENSP00000410594.1:p.Cys995Arg
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152T>C
  hgvsp: ENSP00000428276.1:p.Cys1052Arg
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289T>C
  hgvsp: ENSP00000430912.1:p.Cys97Arg
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.383T>C
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys1047Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-142200524-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200524
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200524
    reference: chr 8
allele count: 1
allele frequency: 8.643640009680878e-6
allele num: 115692
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+8C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.391C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+8C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+8C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+8C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+8C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+8C>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
hgvs: c.3139+8C>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

8-142200524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200524
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200524
    reference: chr 8
allele count: 13
allele frequency: 1.123673201258514e-4
allele num: 115692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+8C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+8C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.391C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+8C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+8C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+8C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+8C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3139+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

8-142200525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200525
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200525
    reference: chr 8
allele count: 85
allele frequency: 7.346585998271391e-4
allele num: 115700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+9G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+9G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+9G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+9G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+9G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.392G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+9G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22492
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-142200527-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200527
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200527
    reference: chr 8
allele count: 1
allele frequency: 8.659658116697553e-6
allele num: 115478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+11C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+11C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+11C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+11C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+11C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.394C>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+11C>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

8-142200527-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200527
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200527
    reference: chr 8
allele count: 142
allele frequency: 1.229671452571053e-3
allele num: 115478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+11C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+11C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+11C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.394C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+11C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+11C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+11C>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22328
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

8-142200528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200528
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200528
    reference: chr 8
allele count: 77
allele frequency: 6.666782108781104e-4
allele num: 115498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.395C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+12C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+12C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+12C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+12C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+12C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+12C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22391
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-142200529-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200529
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200529
    reference: chr 8
allele count: 1
allele frequency: 8.664309974353643e-6
allele num: 115416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+13C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+13C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.396C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+13C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+13C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+13C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+13C>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

8-142200538-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200538
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200539
    reference: chr 8
allele count: 2
allele frequency: 1.744683078318823e-5
allele num: 114634
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+22_3379+23insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+22_3152+23insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.405_406insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+22_3139+23insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+22_2983+23insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+22_1086+23insT
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+22_289+23insT
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

8-142200540-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200540
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200539
    reference: chr 8
allele count: 1
allele frequency: 8.734234706355028e-6
allele num: 114492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+25delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+25delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+25delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+25delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.408delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+25delG
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+25delG
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20418
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: AG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

8-142200542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200542
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200542
    reference: chr 8
allele count: 31
allele frequency: 2.718630511804118e-4
allele num: 114028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+26C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.409C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4426
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19906
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-142200543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200543
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200543
    reference: chr 8
allele count: 5
allele frequency: 4.384811014645269e-5
allele num: 114030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+27G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+27G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+27G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+27G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+27G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.410G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+27G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

8-142200543-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200543
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200543
    reference: chr 8
allele count: 1
allele frequency: 8.769622029290538e-6
allele num: 114030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.410G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+27G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+27G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+27G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+27G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+27G>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+27G>C
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

8-142200544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200544
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200544
    reference: chr 8
allele count: 1
allele frequency: 8.767622922073367e-6
allele num: 114056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+28G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+28G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.411G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+28G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+28G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+28G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+28G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

8-142200553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200553
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200553
    reference: chr 8
allele count: 2
allele frequency: 1.772012829372885e-5
allele num: 112866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.420C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+37C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15981
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6443
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5564
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-142200555-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200555
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200554
    reference: chr 8
allele count: 1
allele frequency: 8.869966294128083e-6
allele num: 112740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.425delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+42delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+42delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+42delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+42delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+42delC
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+42delC
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: TC
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

8-142200555-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200555
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200555
    reference: chr 8
allele count: 1
allele frequency: 8.869966294128083e-6
allele num: 112740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+39T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+39T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.422T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+39T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+39T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+39T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+39T>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

8-142200558-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142200558
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142200558
    reference: chr 8
allele count: 173
allele frequency: 1.539036367518326e-3
allele num: 112408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.289+42C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1086+42C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3152+42C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000520571
  gene symbol: DENND3
  hgvsc: ENST00000520571.1:n.425C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3379+42C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2983+42C>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3139+42C>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10047
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/8-142202380-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202380
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202380
    reference: chr 8
allele count: 1
allele frequency: 8.338614455822021e-6
allele num: 119924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-50A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1008A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1008A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-50A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-50A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-50A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-50A>C
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-50A>C
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

8-142202380-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202380
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202380
    reference: chr 8
allele count: 4
allele frequency: 3.335445782328808e-5
allele num: 119924
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1008A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-50A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1008A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16043
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15273
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

8-142202386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202386
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202386
    reference: chr 8
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1014C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-44C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1014C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-44C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-44C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-44C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-44C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-44C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

8-142202389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202389
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202389
    reference: chr 8
allele count: 103
allele frequency: 8.581188036324252e-4
allele num: 120030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-41A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-41A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1017A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-41A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-41A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-41A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1017A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-41A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 16208
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15275
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

8-142202390-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202390
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202390
    reference: chr 8
allele count: 17
allele frequency: 1.416241794128428e-4
allele num: 120036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1018T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-40T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-40T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-40T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1018T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-40T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-40T>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-40T>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6947
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 9467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

8-142202393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202393
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202393
    reference: chr 8
allele count: 1
allele frequency: 8.33152816889674e-6
allele num: 120026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1021C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-37C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1021C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-37C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

8-142202398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202398
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202398
    reference: chr 8
allele count: 1
allele frequency: 8.324176738920521e-6
allele num: 120132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-32C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1026C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-32C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1026C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-32C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-32C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-32C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-32C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

8-142202410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202410
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202410
    reference: chr 8
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1038C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-20C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1038C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-142202413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202413
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202413
    reference: chr 8
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-17G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-17G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1041G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-17G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-17G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1041G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-17G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-17G>A
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

8-142202415-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202415
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202415
    reference: chr 8
allele count: 4
allele frequency: 3.313452617627568e-5
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1043T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-15T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-15T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-15T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1043T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-15T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-15T>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-15T>G
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

8-142202420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202420
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202420
    reference: chr 8
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-10C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-10C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-10C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1048C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-10C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1048C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-10C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-10C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15473
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9724
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-142202421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202421
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202421
    reference: chr 8
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-9C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-9C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1049C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-9C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-9C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-9C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1049C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-9C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

8-142202425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202425
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202425
    reference: chr 8
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3140-5C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3380-5C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3153-5C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1087-5C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1053C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2984-5C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1053C>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.290-5C>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29632
  bin: 6.25e1
  variant carriers: 0
hgvs: c.3140-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

8-142202432-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202432
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202432
    reference: chr 8
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000429725
  ensembl transcript: ENST00000520725
  gene symbol: DENND3
  hgvsc: ENST00000520725.1:c.3A>G
  hgvsp: ENSP00000429725.1:p.Thr2Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3155A>G
  hgvsp: ENSP00000428276.1:p.Thr1053Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3382A>G
  hgvsp: ENSP00000428714.1:p.Thr1128Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2986A>G
  hgvsp: ENSP00000410594.1:p.Thr996Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3142A>G
  hgvsp: ENSP00000262585.2:p.Thr1048Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1089A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1060A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.292A>G
  hgvsp: ENSP00000430912.1:p.Thr98Ala
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1060A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1048Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

8-142202435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202435
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202435
    reference: chr 8
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.2989G>A
  hgvsp: ENSP00000410594.1:p.Gly997Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1063G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1063G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000429725
  ensembl transcript: ENST00000520725
  gene symbol: DENND3
  hgvsc: ENST00000520725.1:c.6G>A
  hgvsp: ENSP00000429725.1:p.Gly3Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3158G>A
  hgvsp: ENSP00000428276.1:p.Gly1054Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3145G>A
  hgvsp: ENSP00000262585.2:p.Gly1049Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1092G>A
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.295G>A
  hgvsp: ENSP00000430912.1:p.Gly99Ser
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3385G>A
  hgvsp: ENSP00000428714.1:p.Gly1129Ser
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1049Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

8-142202447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202447
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202447
    reference: chr 8
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3397A>G
  hgvsp: ENSP00000428714.1:p.Met1133Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3157A>G
  hgvsp: ENSP00000262585.2:p.Met1053Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3170A>G
  hgvsp: ENSP00000428276.1:p.Met1058Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1104A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.3001A>G
  hgvsp: ENSP00000410594.1:p.Met1001Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.307A>G
  hgvsp: ENSP00000430912.1:p.Met103Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000429725
  ensembl transcript: ENST00000520725
  gene symbol: DENND3
  hgvsc: ENST00000520725.1:c.18A>G
  hgvsp: ENSP00000429725.1:p.Met7Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1075A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1075A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met1053Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

8-142202453-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202453
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202453
    reference: chr 8
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1081A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3163A>G
  hgvsp: ENSP00000262585.2:p.Met1055Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.3007A>G
  hgvsp: ENSP00000410594.1:p.Met1003Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3176A>G
  hgvsp: ENSP00000428276.1:p.Met1060Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1110A>G
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.313A>G
  hgvsp: ENSP00000430912.1:p.Met105Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000429725
  ensembl transcript: ENST00000520725
  gene symbol: DENND3
  hgvsc: ENST00000520725.1:c.24A>G
  hgvsp: ENSP00000429725.1:p.Met9Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3403A>G
  hgvsp: ENSP00000428714.1:p.Met1135Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1081A>G
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1055Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-142202466-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202466
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202466
    reference: chr 8
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000521835
  gene symbol: DENND3
  hgvsc: ENST00000521835.1:n.1094G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000262585
  ensembl transcript: ENST00000262585
  gene symbol: DENND3
  hgvsc: ENST00000262585.2:c.3176G>T
  hgvsp: ENSP00000262585.2:p.Gly1059Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428276
  ensembl transcript: ENST00000518668
  gene symbol: DENND3
  hgvsc: ENST00000518668.1:c.3189G>T
  hgvsp: ENSP00000428276.1:p.Gly1064Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000410594
  ensembl transcript: ENST00000424248
  gene symbol: DENND3
  hgvsc: ENST00000424248.1:c.3020G>T
  hgvsp: ENSP00000410594.1:p.Gly1007Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000430912
  ensembl transcript: ENST00000523308
  gene symbol: DENND3
  hgvsc: ENST00000523308.1:c.326G>T
  hgvsp: ENSP00000430912.1:p.Gly109Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000428714
  ensembl transcript: ENST00000519811
  gene symbol: DENND3
  hgvsc: ENST00000519811.1:c.3416G>T
  hgvsp: ENSP00000428714.1:p.Gly1139Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105339
  ensembl protein: ENSP00000429725
  ensembl transcript: ENST00000520725
  gene symbol: DENND3
  hgvsc: ENST00000520725.1:c.37G>T
  hgvsp: ENSP00000429725.1:p.Gly13Val
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000517813
  gene symbol: DENND3
  hgvsc: ENST00000517813.1:n.1123G>T
  variant of: http://identifiers.org/hgnc/29134
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1094G>T
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6903
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1059Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-142202469-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142202469
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 142202469
    reference: chr 8
allele count: 8
allele frequency: 6.595327210671239e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105339
  ensembl transcript: ENST00000523530
  gene symbol: DENND3
  hgvsc: ENST00000523530.1:n.1097C>A
  variant of: http://identifiers.org/hgnc/29134
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser1060Tyr
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 20828
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13127
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588259585146596e-5
allele num: 62962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.403e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

DP
type: SiteQuality
SIO_000300: 2.665823e6

FS
type: SiteQuality
SIO_000300: 3.588e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

GenotypeQuality
all individuals: 2706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 7.25e1
variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.537373551025428e-5
allele num: 65046
num of homozygotes: 0

South Asian
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num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.535720867375146e-5
allele num: 65116
num of homozygotes: 0

BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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SIO_000300: -5.3e-1

FS
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 1.535107918086642e-5
allele num: 65142
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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BaseQRankSum
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FS
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MQ
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SIO_000300: 5.871e1

ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Latino
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allele num: 11520
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 1.159554730983302e-4
allele num: 8624
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.525785779676533e-5
allele num: 65540
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South Asian
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allele frequency: 7.059155724975294e-5
allele num: 14166
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African
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 1.367822730174169e-4
allele num: 65798
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South Asian
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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African
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MQ
type: SiteQuality
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ClippingRankSum
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FS
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MQRankSum
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DP
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Finnish)
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MQ
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BaseQRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.61902e6

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2791
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GenotypeQuality
all individuals: 22193
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3400
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.549220920401014e-5
allele num: 66232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

FS
type: SiteQuality
SIO_000300: 7.999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.620429e6

GenotypeQuality
all individuals: 669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 2.62189e6

QD
type: SiteQuality
SIO_000300: 1.121e1

FS
type: SiteQuality
SIO_000300: 2.436e0

VQSLOD
type: SiteQuality
SIO_000300: -9.463e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22219
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 18148
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035003017501508e-5
allele num: 66280
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323015735777278e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 7.047692604749952e-3
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.625005e6

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2810
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 1715
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.2266500622665e-5
allele num: 16060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 2.62216e6

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22185
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variant carriers: 16

GenotypeQuality
all individuals: 1724
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.782342871117633e-4
allele num: 16356
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 2.620681e6

FS
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.518e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

GenotypeQuality
all individuals: 3422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 259
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17725
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.112469437652811e-5
allele num: 16360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

MQ
type: SiteQuality
SIO_000300: 5.764e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

VQSLOD
type: SiteQuality
SIO_000300: -1.45e0

DP
type: SiteQuality
SIO_000300: 2.618696e6

FS
type: SiteQuality
SIO_000300: 4.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 749
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
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variant carriers: 2

GenotypeQuality
all individuals: 332
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16697
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.141690229343387e-4
allele num: 6366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.065254443632822e-4
allele num: 65712
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.665000000000001e1

QD
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 1.21026e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

DP
type: SiteQuality
SIO_000300: 2.612059e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22122
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512355948095944e-5
allele num: 66122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 2.607833e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.428e0

QD
type: SiteQuality
SIO_000300: 1.598e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 275
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GenotypeQuality
all individuals: 143
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1698
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GenotypeQuality
all individuals: 22124
bin: 9.75e1
variant carriers: 15

African
type: Population
allele count: 2
allele frequency: 1.937608990505716e-4
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.882216526302942e-4
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.793742757821553e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 3.232e0

QD
type: SiteQuality
SIO_000300: 1.134e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

DP
type: SiteQuality
SIO_000300: 2.606577e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 849
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 2114
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515518913676043e-5
allele num: 65984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.603149e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.022e0

FS
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.927e-1

QD
type: SiteQuality
SIO_000300: 1.789e1

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 35

GenotypeQuality
all individuals: 2139
bin: 7.75e1
variant carriers: 131

GenotypeQuality
all individuals: 13749
bin: 6.25e1
variant carriers: 87

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 36

GenotypeQuality
all individuals: 1605
bin: 8.25e1
variant carriers: 165

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 97

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 134

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 58

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 81

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 47

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 197

African
type: Population
allele count: 2311
allele frequency: 2.24368932038835e-1
allele num: 10300
num of homozygotes: 245

European (Non-Finnish)
type: Population
allele count: 17734
allele frequency: 2.68778417702334e-1
allele num: 65980
num of homozygotes: 2383

European (Finnish)
type: Population
allele count: 1877
allele frequency: 2.848254931714719e-1
allele num: 6590
num of homozygotes: 276

East Asian
type: Population
allele count: 5065
allele frequency: 5.89639115250291e-1
allele num: 8590
num of homozygotes: 1506

South Asian
type: Population
allele count: 7626
allele frequency: 4.637557771831671e-1
allele num: 16444
num of homozygotes: 1819

Other
type: Population
allele count: 288
allele frequency: 3.2e-1
allele num: 900
num of homozygotes: 49

Latino
type: Population
allele count: 5506
allele frequency: 4.776197085357391e-1
allele num: 11528
num of homozygotes: 1347

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

DP
type: SiteQuality
SIO_000300: 2.808959e6

QD
type: SiteQuality
SIO_000300: 1.606e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33631
bin: 9.75e1
variant carriers: 107

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 60
allele frequency: 9.104704097116844e-3
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 6.971809639284631e-4
allele num: 65980
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

QD
type: SiteQuality
SIO_000300: 1.606e1

FS
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.808959e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.227295041728031e-4
allele num: 16296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 2.858e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

VQSLOD
type: SiteQuality
SIO_000300: -1.516e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 2.197e1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.791047e6

GenotypeQuality
all individuals: 3618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4215
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519803033526855e-5
allele num: 65798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.224e0

VQSLOD
type: SiteQuality
SIO_000300: -4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 1.790585e6

QD
type: SiteQuality
SIO_000300: 1.076e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1705
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3647
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4190
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.564125969876768e-5
allele num: 65730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.832e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 1.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.78404e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 30637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3633
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.763718023823472e-5
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 1.77562e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 5.9e1

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.572473708276177e-5
allele num: 65610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.268e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.773782e6

FS
type: SiteQuality
SIO_000300: 2.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.918e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
all individuals: 4113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527417137620284e-5
allele num: 65470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.243e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.761187e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

VQSLOD
type: SiteQuality
SIO_000300: -1.624e-1

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540689612670631e-5
allele num: 64906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.729981e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

VQSLOD
type: SiteQuality
SIO_000300: -4.347e0

FS
type: SiteQuality
SIO_000300: 6.932e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 9.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

GenotypeQuality
all individuals: 829
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.290655653071761e-4
allele num: 15496
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.004027315706532e-4
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568086307470363e-5
allele num: 63772
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.711244e6

GenotypeQuality
all individuals: 1199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.230335503566867e-5
allele num: 64202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

FS
type: SiteQuality
SIO_000300: 5.05e-1

DP
type: SiteQuality
SIO_000300: 1.706422e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.490134994807892e-5
allele num: 15408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64064
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.700892e6

FS
type: SiteQuality
SIO_000300: 2.089e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

QD
type: SiteQuality
SIO_000300: 7.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

GenotypeQuality
all individuals: 353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28364
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.309929263819754e-4
allele num: 15268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544163063619518e-5
allele num: 64760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

DP
type: SiteQuality
SIO_000300: 1.700877e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27934
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550051151688006e-5
allele num: 64514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 6.628e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.26e-1

DP
type: SiteQuality
SIO_000300: 1.68225e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

QD
type: SiteQuality
SIO_000300: 1.515e1

GenotypeQuality
all individuals: 907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8660
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 27762
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.148614609571788e-4
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550051151688006e-5
allele num: 64514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.832e0

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.678973e6

FS
type: SiteQuality
SIO_000300: 3.416e0

QD
type: SiteQuality
SIO_000300: 1.405e1

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 3296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.293e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.660018e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

GenotypeQuality
all individuals: 453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26480
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.951202558042541e-5
allele num: 14386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.051156271899089e-3
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 1.293e0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.660018e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 1182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8489
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 69
allele frequency: 6.965475469412477e-3
allele num: 9906
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.184834123222749e-3
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.244477630514591e-4
allele num: 64284
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.257623554153522e-4
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

DP
type: SiteQuality
SIO_000300: 1.659055e6

FS
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
all individuals: 3909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4665
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.013606396409034e-5
allele num: 14258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.629e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 1.650915e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

GenotypeQuality
all individuals: 8424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2737
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3627
bin: 9.75e1
variant carriers: 139

GenotypeQuality
all individuals: 1171
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 132
allele frequency: 1.335491703763658e-2
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.02000702000702e-4
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.113228106223343e-5
allele num: 64242
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 5.629e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
type: SiteQuality
SIO_000300: 1.650915e6

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 1168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 9.75e1
variant carriers: 77

GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
all individuals: 26772
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556856395566073e-5
allele num: 64232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 75
allele frequency: 7.591093117408907e-3
allele num: 9880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.771929824561403e-5
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 4.478e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.649071e6

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8420
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
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variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557923599426684e-5
allele num: 64188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14264
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.168e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 3.214e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.645053e6

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
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variant carriers: 0

GenotypeQuality
all individuals: 7944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.034174125305126e-4
allele num: 9832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.238e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.605388e6

GenotypeQuality
all individuals: 1148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.074e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.948e0

MQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 1.596092e6

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.59e-1

GenotypeQuality
all individuals: 1801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.705587100417229e-5
allele num: 63754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.858965272856131e-5
allele num: 11288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.351281448389372e-4
allele num: 8506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.833920187793427e-3
allele num: 13632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.585254e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.125e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 1782
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.858965272856131e-5
allele num: 11288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.92141396435875e-4
allele num: 13692
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.43e-2

QD
type: SiteQuality
SIO_000300: 9.99e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 1.577528e6

GenotypeQuality
all individuals: 537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22935
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56941523588311e-5
allele num: 63718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13692
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.43e-2

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 1.577528e6

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 1883
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 627
bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.309941520467836e-5
allele num: 13680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.57202e6

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.645e1

GenotypeQuality
all individuals: 1112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13236
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.354048964218456e-4
allele num: 8496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.66e0

FS
type: SiteQuality
SIO_000300: 2.118e0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

DP
type: SiteQuality
SIO_000300: 1.500951e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 2413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 574
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582178343142839e-5
allele num: 63204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.698e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.491616e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.364e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 17077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2690
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582178343142839e-5
allele num: 63204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.491616e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 1.698e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 3620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 542
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 9.75e1
variant carriers: 171

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13072
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63092
num of homozygotes: 0

African
type: Population
allele count: 169
allele frequency: 1.752748392449699e-2
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.683363148479427e-4
allele num: 11180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.464e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

FS
type: SiteQuality
SIO_000300: 8.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.474048e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 847
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.503e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 3.649e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.946905e6

GenotypeQuality
all individuals: 907
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7027
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9410
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.85579332947754e-4
allele num: 10374
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.946905e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.503e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 3.649e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
all individuals: 787
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.949625e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7045
bin: 9.75e1
variant carriers: 103

African
type: Population
allele count: 90
allele frequency: 8.672191173636538e-3
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.520512376666089e-4
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023248783142365e-5
allele num: 66154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.952485e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.964874096913636e-4
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15806
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

DP
type: SiteQuality
SIO_000300: 1.951521e6

BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 15798
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Latino
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allele frequency: 0.0e0
allele num: 11556
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66154
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East Asian
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allele frequency: 0.0e0
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African
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BaseQRankSum
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MQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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SIO_000300: -8.028e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8640
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66338
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -2.783e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11564
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66376
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Other
type: Population
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.977849e6

FS
type: SiteQuality
SIO_000300: 2.675e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 1
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allele num: 11564
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East Asian
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South Asian
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allele num: 16194
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66420
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Other
type: Population
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FS
type: SiteQuality
SIO_000300: 1.5378e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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MQ
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MQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10396
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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MQRankSum
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MQ
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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FS
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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African
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East Asian
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South Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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DP
type: SiteQuality
SIO_000300: 1.989016e6

FS
type: SiteQuality
SIO_000300: 1.0783e1

QD
type: SiteQuality
SIO_000300: 1.744e1

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.767e1

FS
type: SiteQuality
SIO_000300: 2.077e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.776e0

VQSLOD
type: SiteQuality
SIO_000300: -7.75e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

DP
type: SiteQuality
SIO_000300: 1.989917e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.939e0

QD
type: SiteQuality
SIO_000300: 1.202e1

MQ
type: SiteQuality
SIO_000300: 5.991e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.525e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.992388e6

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

GenotypeQuality
all individuals: 9814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.587e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

DP
type: SiteQuality
SIO_000300: 1.993067e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.993819e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.982e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1