10-99509374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509374
    reference: chr 10
allele count: 8
allele frequency: 6.596850004123031e-5
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+31C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+31C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-99509376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509376
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509376
    reference: chr 10
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+33A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+33A>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

10-99509378-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509378
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509378
    reference: chr 10
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+35G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+35G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

10-99509382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509382
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509382
    reference: chr 10
allele count: 2
allele frequency: 1.650137786505173e-5
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+39G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+39G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22730
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6410
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

10-99509382-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509382
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509382
    reference: chr 10
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+39G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+39G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

10-99509383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509383
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509383
    reference: chr 10
allele count: 14
allele frequency: 1.155268022181146e-4
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+40C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+40C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-99509389-G-GGGCTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509389
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509394
    reference: chr 10
allele count: 3
allele frequency: 2.479420807299415e-5
allele num: 120996
alternate allele: GGGCTA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+56_664+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+56_664+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+56_406+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+56_598+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+56_664+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+56_370+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+56_664+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+56_568+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+56_310+60dupAGGCT
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-99509391-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509391
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509391
    reference: chr 10
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+48G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+48G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

10-99509395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99509395
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99509395
    reference: chr 10
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.664+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.568+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.664+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.664+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.310+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.598+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.406+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.370+52G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.664+52G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-99510037-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510037
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510037
    reference: chr 10
allele count: 6
allele frequency: 4.982561036372695e-5
allele num: 120420
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-51C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.248C>A
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

10-99510042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510042
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510042
    reference: chr 10
allele count: 4
allele frequency: 3.322314324158209e-5
allele num: 120398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.253G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-46G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-46G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35284
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

10-99510043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510043
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510043
    reference: chr 10
allele count: 2
allele frequency: 1.66024704476026e-5
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.254G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-45G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-99510043-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510043
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510043
    reference: chr 10
allele count: 2
allele frequency: 1.66024704476026e-5
allele num: 120464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.254G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-45G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-45G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

10-99510045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510045
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510045
    reference: chr 10
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.256G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-43G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-43G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-99510052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510052
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510052
    reference: chr 10
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-36T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.263T>C
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

10-99510068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510068
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510068
    reference: chr 10
allele count: 78427
allele frequency: 6.476645856043339e-1
allele num: 121092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.279G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-20G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-20G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 2.75e1
  variant carriers: 705
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 8.75e1
  variant carriers: 2623
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.25e1
  variant carriers: 1023
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.75e1
  variant carriers: 1531
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 6.25e1
  variant carriers: 4613
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 8.25e1
  variant carriers: 3229
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 7.25e1
  variant carriers: 4297
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 2121
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 4283
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 7.75e1
  variant carriers: 3841
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 9.75e1
  variant carriers: 9454
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.75e1
  variant carriers: 4602
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 4.75e1
  variant carriers: 2956
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 9.25e1
  variant carriers: 2004
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 5.25e1
  variant carriers: 3682
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 51078
  bin: 9.75e1
  variant carriers: 50388
num of homozygotes: 26330
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

10-99510073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510073
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510073
    reference: chr 10
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.284C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-15C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-15C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

10-99510079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510079
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510079
    reference: chr 10
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.311-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.665-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.371-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.665-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.665-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.290C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.599-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.569-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.665-9C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.407-9C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

10-99510123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510123
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510123
    reference: chr 10
allele count: 6
allele frequency: 4.95319233245827e-5
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.604A>G
  hgvsp: ENSP00000337993.7:p.Met202Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.334A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.700A>G
  hgvsp: ENSP00000401580.2:p.Met234Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.346A>G
  hgvsp: ENSP00000359646.3:p.Met116Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.634A>G
  hgvsp: ENSP00000409594.1:p.Met212Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.406A>G
  hgvsp: ENSP00000359642.3:p.Met136Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.700A>G
  hgvsp: ENSP00000353069.3:p.Met234Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.442A>G
  hgvsp: ENSP00000350148.4:p.Met148Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.700A>G
  hgvsp: ENSP00000348593.4:p.Met234Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.700A>G
  hgvsp: ENSP00000377282.3:p.Met234Val
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met234Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

10-99510140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510140
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510140
    reference: chr 10
allele count: 16
allele frequency: 1.321113037734291e-4
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.717A>G
  hgvsp: ENST00000359980.3:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.717A>G
  hgvsp: ENST00000393677.4:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.651A>G
  hgvsp: ENST00000423811.1:c.651A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.363A>G
  hgvsp: ENST00000370613.3:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.459A>G
  hgvsp: ENST00000357540.4:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.717A>G
  hgvsp: ENST00000356257.4:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.423A>G
  hgvsp: ENST00000370610.3:c.423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.717A>G
  hgvsp: ENST00000453958.2:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.351A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.621A>G
  hgvsp: ENST00000337540.7:c.621A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu239Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-99510145-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510145
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510145
    reference: chr 10
allele count: 3
allele frequency: 2.477332408462567e-5
allele num: 121098
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.722A>G
  hgvsp: ENSP00000348593.4:p.His241Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.356A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.428A>G
  hgvsp: ENSP00000359642.3:p.His143Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.464A>G
  hgvsp: ENSP00000350148.4:p.His155Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.722A>G
  hgvsp: ENSP00000377282.3:p.His241Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.368A>G
  hgvsp: ENSP00000359646.3:p.His123Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.722A>G
  hgvsp: ENSP00000401580.2:p.His241Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.656A>G
  hgvsp: ENSP00000409594.1:p.His219Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.626A>G
  hgvsp: ENSP00000337993.7:p.His209Arg
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.722A>G
  hgvsp: ENSP00000353069.3:p.His241Arg
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His241Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

10-99510159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510159
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510159
    reference: chr 10
allele count: 6
allele frequency: 4.9573666468372e-5
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.736C>T
  hgvsp: ENSP00000348593.4:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.736C>T
  hgvsp: ENSP00000401580.2:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.442C>T
  hgvsp: ENSP00000359642.3:p.Pro148Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.640C>T
  hgvsp: ENSP00000337993.7:p.Pro214Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.736C>T
  hgvsp: ENSP00000353069.3:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.478C>T
  hgvsp: ENSP00000350148.4:p.Pro160Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.382C>T
  hgvsp: ENSP00000359646.3:p.Pro128Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.670C>T
  hgvsp: ENSP00000409594.1:p.Pro224Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.736C>T
  hgvsp: ENSP00000377282.3:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.370C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro246Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

10-99510165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510165
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510165
    reference: chr 10
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.742C>T
  hgvsp: ENSP00000377282.3:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.388C>T
  hgvsp: ENSP00000359646.3:p.Pro130Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.448C>T
  hgvsp: ENSP00000359642.3:p.Pro150Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.742C>T
  hgvsp: ENSP00000348593.4:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.742C>T
  hgvsp: ENSP00000401580.2:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.742C>T
  hgvsp: ENSP00000353069.3:p.Pro248Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.676C>T
  hgvsp: ENSP00000409594.1:p.Pro226Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.484C>T
  hgvsp: ENSP00000350148.4:p.Pro162Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.376C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.646C>T
  hgvsp: ENSP00000337993.7:p.Pro216Ser
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro248Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

10-99510178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510178
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510178
    reference: chr 10
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.755G>A
  hgvsp: ENSP00000401580.2:p.Gly252Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.755G>A
  hgvsp: ENSP00000348593.4:p.Gly252Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.389G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.755G>A
  hgvsp: ENSP00000377282.3:p.Gly252Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.755G>A
  hgvsp: ENSP00000353069.3:p.Gly252Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.659G>A
  hgvsp: ENSP00000337993.7:p.Gly220Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.689G>A
  hgvsp: ENSP00000409594.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.461G>A
  hgvsp: ENSP00000359642.3:p.Gly154Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.401G>A
  hgvsp: ENSP00000359646.3:p.Gly134Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.497G>A
  hgvsp: ENSP00000350148.4:p.Gly166Glu
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly252Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

10-99510178-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510178
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510178
    reference: chr 10
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.689G>C
  hgvsp: ENSP00000409594.1:p.Gly230Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.389G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.755G>C
  hgvsp: ENSP00000353069.3:p.Gly252Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.659G>C
  hgvsp: ENSP00000337993.7:p.Gly220Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.755G>C
  hgvsp: ENSP00000377282.3:p.Gly252Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.401G>C
  hgvsp: ENSP00000359646.3:p.Gly134Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.755G>C
  hgvsp: ENSP00000401580.2:p.Gly252Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.755G>C
  hgvsp: ENSP00000348593.4:p.Gly252Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.461G>C
  hgvsp: ENSP00000359642.3:p.Gly154Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.497G>C
  hgvsp: ENSP00000350148.4:p.Gly166Ala
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly252Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-99510181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510181
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510181
    reference: chr 10
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.500G>A
  hgvsp: ENSP00000350148.4:p.Gly167Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.758G>A
  hgvsp: ENSP00000353069.3:p.Gly253Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.404G>A
  hgvsp: ENSP00000359646.3:p.Gly135Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.662G>A
  hgvsp: ENSP00000337993.7:p.Gly221Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.758G>A
  hgvsp: ENSP00000377282.3:p.Gly253Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.758G>A
  hgvsp: ENSP00000348593.4:p.Gly253Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.692G>A
  hgvsp: ENSP00000409594.1:p.Gly231Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.464G>A
  hgvsp: ENSP00000359642.3:p.Gly155Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.392G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.758G>A
  hgvsp: ENSP00000401580.2:p.Gly253Glu
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly253Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

10-99510181-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510181
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510181
    reference: chr 10
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.692G>T
  hgvsp: ENSP00000409594.1:p.Gly231Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.758G>T
  hgvsp: ENSP00000401580.2:p.Gly253Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.404G>T
  hgvsp: ENSP00000359646.3:p.Gly135Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.500G>T
  hgvsp: ENSP00000350148.4:p.Gly167Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.758G>T
  hgvsp: ENSP00000348593.4:p.Gly253Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.758G>T
  hgvsp: ENSP00000377282.3:p.Gly253Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.464G>T
  hgvsp: ENSP00000359642.3:p.Gly155Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.758G>T
  hgvsp: ENSP00000353069.3:p.Gly253Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.662G>T
  hgvsp: ENSP00000337993.7:p.Gly221Val
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.392G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly253Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-99510187-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510187
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510187
    reference: chr 10
allele count: 10
allele frequency: 8.27417299640901e-5
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.410A>G
  hgvsp: ENSP00000359646.3:p.Asp137Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.398A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.470A>G
  hgvsp: ENSP00000359642.3:p.Asp157Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.764A>G
  hgvsp: ENSP00000353069.3:p.Asp255Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.698A>G
  hgvsp: ENSP00000409594.1:p.Asp233Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.764A>G
  hgvsp: ENSP00000401580.2:p.Asp255Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.506A>G
  hgvsp: ENSP00000350148.4:p.Asp169Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.764A>G
  hgvsp: ENSP00000348593.4:p.Asp255Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.764A>G
  hgvsp: ENSP00000377282.3:p.Asp255Gly
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.668A>G
  hgvsp: ENSP00000337993.7:p.Asp223Gly
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp255Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-99510188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510188
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510188
    reference: chr 10
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.765T>C
  hgvsp: ENST00000453958.2:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.507T>C
  hgvsp: ENST00000357540.4:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.699T>C
  hgvsp: ENST00000423811.1:c.699T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.669T>C
  hgvsp: ENST00000337540.7:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.411T>C
  hgvsp: ENST00000370613.3:c.411T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.765T>C
  hgvsp: ENST00000393677.4:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.765T>C
  hgvsp: ENST00000356257.4:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.471T>C
  hgvsp: ENST00000370610.3:c.471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.399T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.765T>C
  hgvsp: ENST00000359980.3:c.765T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp255Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

10-99510190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510190
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510190
    reference: chr 10
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.701G>A
  hgvsp: ENSP00000409594.1:p.Gly234Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.509G>A
  hgvsp: ENSP00000350148.4:p.Gly170Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.401G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.767G>A
  hgvsp: ENSP00000377282.3:p.Gly256Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.413G>A
  hgvsp: ENSP00000359646.3:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.767G>A
  hgvsp: ENSP00000348593.4:p.Gly256Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.671G>A
  hgvsp: ENSP00000337993.7:p.Gly224Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.767G>A
  hgvsp: ENSP00000401580.2:p.Gly256Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.767G>A
  hgvsp: ENSP00000353069.3:p.Gly256Asp
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.473G>A
  hgvsp: ENSP00000359642.3:p.Gly158Asp
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22910
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly256Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-99510200-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510200
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510200
    reference: chr 10
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.519C>A
  hgvsp: ENSP00000350148.4:p.Asp173Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.777C>A
  hgvsp: ENSP00000348593.4:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.411C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.681C>A
  hgvsp: ENSP00000337993.7:p.Asp227Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.777C>A
  hgvsp: ENSP00000401580.2:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.777C>A
  hgvsp: ENSP00000377282.3:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.483C>A
  hgvsp: ENSP00000359642.3:p.Asp161Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.423C>A
  hgvsp: ENSP00000359646.3:p.Asp141Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.711C>A
  hgvsp: ENSP00000409594.1:p.Asp237Glu
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.777C>A
  hgvsp: ENSP00000353069.3:p.Asp259Glu
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp259Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-99510200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510200
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510200
    reference: chr 10
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.423C>T
  hgvsp: ENST00000370613.3:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.777C>T
  hgvsp: ENST00000356257.4:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.777C>T
  hgvsp: ENST00000359980.3:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.777C>T
  hgvsp: ENST00000453958.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.483C>T
  hgvsp: ENST00000370610.3:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.777C>T
  hgvsp: ENST00000393677.4:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.519C>T
  hgvsp: ENST00000357540.4:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.681C>T
  hgvsp: ENST00000337540.7:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.711C>T
  hgvsp: ENST00000423811.1:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.411C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp259Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

10-99510204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510204
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510204
    reference: chr 10
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.427A>G
  hgvsp: ENSP00000359646.3:p.Thr143Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.715A>G
  hgvsp: ENSP00000409594.1:p.Thr239Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.781A>G
  hgvsp: ENSP00000353069.3:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.487A>G
  hgvsp: ENSP00000359642.3:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.415A>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.781A>G
  hgvsp: ENSP00000377282.3:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.781A>G
  hgvsp: ENSP00000348593.4:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.523A>G
  hgvsp: ENSP00000350148.4:p.Thr175Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.781A>G
  hgvsp: ENSP00000401580.2:p.Thr261Ala
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.685A>G
  hgvsp: ENSP00000337993.7:p.Thr229Ala
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr261Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

10-99510205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510205
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510205
    reference: chr 10
allele count: 2
allele frequency: 1.657440249279014e-5
allele num: 120668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.686C>T
  hgvsp: ENSP00000337993.7:p.Thr229Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.416C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.782C>T
  hgvsp: ENSP00000401580.2:p.Thr261Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.524C>T
  hgvsp: ENSP00000350148.4:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.428C>T
  hgvsp: ENSP00000359646.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.782C>T
  hgvsp: ENSP00000377282.3:p.Thr261Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.716C>T
  hgvsp: ENSP00000409594.1:p.Thr239Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.782C>T
  hgvsp: ENSP00000348593.4:p.Thr261Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.488C>T
  hgvsp: ENSP00000359642.3:p.Thr163Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.782C>T
  hgvsp: ENSP00000353069.3:p.Thr261Met
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr261Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-99510206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510206
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510206
    reference: chr 10
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.429G>A
  hgvsp: ENST00000370613.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.717G>A
  hgvsp: ENST00000423811.1:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.783G>A
  hgvsp: ENST00000453958.2:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.783G>A
  hgvsp: ENST00000359980.3:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.417G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.525G>A
  hgvsp: ENST00000357540.4:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.783G>A
  hgvsp: ENST00000393677.4:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.489G>A
  hgvsp: ENST00000370610.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.783G>A
  hgvsp: ENST00000356257.4:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.687G>A
  hgvsp: ENST00000337540.7:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr261Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

10-99510212-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510212
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510212
    reference: chr 10
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.531C>G
  hgvsp: ENST00000357540.4:c.531C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.423C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.789C>G
  hgvsp: ENST00000356257.4:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.495C>G
  hgvsp: ENST00000370610.3:c.495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.723C>G
  hgvsp: ENST00000423811.1:c.723C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.789C>G
  hgvsp: ENST00000359980.3:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.435C>G
  hgvsp: ENST00000370613.3:c.435C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.789C>G
  hgvsp: ENST00000453958.2:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.693C>G
  hgvsp: ENST00000337540.7:c.693C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.789C>G
  hgvsp: ENST00000393677.4:c.789C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala263Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

10-99510217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510217
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510217
    reference: chr 10
allele count: 2
allele frequency: 1.661239949498306e-5
allele num: 120392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.728C>T
  hgvsp: ENSP00000409594.1:p.Thr243Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.794C>T
  hgvsp: ENSP00000401580.2:p.Thr265Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.440C>T
  hgvsp: ENSP00000359646.3:p.Thr147Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.794C>T
  hgvsp: ENSP00000353069.3:p.Thr265Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.794C>T
  hgvsp: ENSP00000348593.4:p.Thr265Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.794C>T
  hgvsp: ENSP00000377282.3:p.Thr265Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.500C>T
  hgvsp: ENSP00000359642.3:p.Thr167Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.698C>T
  hgvsp: ENSP00000337993.7:p.Thr233Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.536C>T
  hgvsp: ENSP00000350148.4:p.Thr179Ile
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.428C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr265Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-99510219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510219
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510219
    reference: chr 10
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.700C>T
  hgvsp: ENSP00000337993.7:p.Pro234Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.796C>T
  hgvsp: ENSP00000348593.4:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.502C>T
  hgvsp: ENSP00000359642.3:p.Pro168Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.796C>T
  hgvsp: ENSP00000353069.3:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.538C>T
  hgvsp: ENSP00000350148.4:p.Pro180Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.796C>T
  hgvsp: ENSP00000377282.3:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.442C>T
  hgvsp: ENSP00000359646.3:p.Pro148Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.730C>T
  hgvsp: ENSP00000409594.1:p.Pro244Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.796C>T
  hgvsp: ENSP00000401580.2:p.Pro266Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.430C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro266Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

10-99510222-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510222
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510222
    reference: chr 10
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.505A>T
  hgvsp: ENSP00000359642.3:p.Thr169Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.445A>T
  hgvsp: ENSP00000359646.3:p.Thr149Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.799A>T
  hgvsp: ENSP00000377282.3:p.Thr267Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.703A>T
  hgvsp: ENSP00000337993.7:p.Thr235Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.799A>T
  hgvsp: ENSP00000348593.4:p.Thr267Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.733A>T
  hgvsp: ENSP00000409594.1:p.Thr245Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.541A>T
  hgvsp: ENSP00000350148.4:p.Thr181Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.433A>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.799A>T
  hgvsp: ENSP00000401580.2:p.Thr267Ser
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.799A>T
  hgvsp: ENSP00000353069.3:p.Thr267Ser
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr267Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

10-99510223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510223
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510223
    reference: chr 10
allele count: 4
allele frequency: 3.326348002528024e-5
allele num: 120252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.734C>T
  hgvsp: ENSP00000409594.1:p.Thr245Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.800C>T
  hgvsp: ENSP00000353069.3:p.Thr267Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.446C>T
  hgvsp: ENSP00000359646.3:p.Thr149Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.800C>T
  hgvsp: ENSP00000348593.4:p.Thr267Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.704C>T
  hgvsp: ENSP00000337993.7:p.Thr235Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.542C>T
  hgvsp: ENSP00000350148.4:p.Thr181Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.800C>T
  hgvsp: ENSP00000401580.2:p.Thr267Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.800C>T
  hgvsp: ENSP00000377282.3:p.Thr267Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.506C>T
  hgvsp: ENSP00000359642.3:p.Thr169Met
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.434C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr267Met
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

10-99510224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510224
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510224
    reference: chr 10
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.435G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.735G>A
  hgvsp: ENST00000423811.1:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.801G>A
  hgvsp: ENST00000359980.3:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.543G>A
  hgvsp: ENST00000357540.4:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.801G>A
  hgvsp: ENST00000453958.2:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.447G>A
  hgvsp: ENST00000370613.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.507G>A
  hgvsp: ENST00000370610.3:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.801G>A
  hgvsp: ENST00000393677.4:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.801G>A
  hgvsp: ENST00000356257.4:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.705G>A
  hgvsp: ENST00000337540.7:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr267Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

10-99510228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510228
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510228
    reference: chr 10
allele count: 1
allele frequency: 8.323622440486099e-6
allele num: 120140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+1G>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+1G>C
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
hgvs: c.804+1G>C
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

10-99510238-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510238
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510238
    reference: chr 10
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+11C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+11C>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

10-99510245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510245
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510245
    reference: chr 10
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+18G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+18G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16984
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27982
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

10-99510246-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510246
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510246
    reference: chr 10
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+19G>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+19G>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/10-99510263-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510263
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510263
    reference: chr 10
allele count: 2
allele frequency: 1.703809718530634e-5
allele num: 117384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+36C>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+36C>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

10-99510263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510263
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510263
    reference: chr 10
allele count: 5
allele frequency: 4.259524296326586e-5
allele num: 117384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+36C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+36C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff

10-99510264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510264
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510264
    reference: chr 10
allele count: 2
allele frequency: 1.705029838022165e-5
allele num: 117300
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+37G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+37G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

10-99510266-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510266
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510266
    reference: chr 10
allele count: 4
allele frequency: 3.411746643694239e-5
allele num: 117242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+39T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+39T>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-99510268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510268
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510268
    reference: chr 10
allele count: 2
allele frequency: 1.710776179152481e-5
allele num: 116906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+41G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+41G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5184
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

10-99510272-G-GCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510272
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510275
    reference: chr 10
allele count: 9
allele frequency: 7.783716465154895e-5
allele num: 115626
alternate allele: GCCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+49_450+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+49_546+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+49_804+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+49_738+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+49_708+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+49_438+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+49_510+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+49_804+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+49_804+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+49_804+51dupCCC
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-99510272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510272
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510272
    reference: chr 10
allele count: 2
allele frequency: 1.729714770034421e-5
allele num: 115626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+45G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+45G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5264
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

10-99510272-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510272
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510273
    reference: chr 10
allele count: 1
allele frequency: 8.648573850172107e-6
allele num: 115626
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+51dupC
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+51dupC
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

10-99510276-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510276
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510276
    reference: chr 10
allele count: 1
allele frequency: 8.664460117490079e-6
allele num: 115414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+49C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+49C>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

10-99510276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510276
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510276
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 115414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+49C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+49C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

10-99510277-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510277
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510277
    reference: chr 10
allele count: 1
allele frequency: 8.701856976278738e-6
allele num: 114918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+50C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+50C>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-99510277-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510277
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510275
    reference: chr 10
allele count: 1
allele frequency: 8.701856976278738e-6
allele num: 114918
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+51_804+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+51_804+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+51_450+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+51_804+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+51_804+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+51_546+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+51_738+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+51_438+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+51_708+52delCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+51_510+52delCT
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: CCT
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

10-99510278-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510278
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510278
    reference: chr 10
allele count: 1
allele frequency: 8.747987962768564e-6
allele num: 114312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+51C>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+51C>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

10-99510278-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99510278
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99510277
    reference: chr 10
allele count: 9
allele frequency: 7.873189166491708e-5
allele num: 114312
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.804+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.546+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.438+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.708+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.804+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.450+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.804+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.738+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.510+52delT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.804+52delT
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: CT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS

10-99511082-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511082
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511082
    reference: chr 10
allele count: 11
allele frequency: 9.317611980754896e-5
allele num: 118056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-51T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-51T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-51T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-66T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-51T>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

10-99511084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511084
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511084
    reference: chr 10
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-49G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-49G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-49G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-64G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-49G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

10-99511085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511085
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511085
    reference: chr 10
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-48T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-48T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-48T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-63T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-48T>C
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

10-99511085-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511085
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511085
    reference: chr 10
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-48T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-48T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-48T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-63T>G
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-48T>G
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8423
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

10-99511095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511095
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511095
    reference: chr 10
allele count: 2
allele frequency: 1.654506047219603e-5
allele num: 120882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-38T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-53T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-53T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-38T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-53T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-53T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-38T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-38T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-53T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-53T>C
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8561
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

10-99511104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511104
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511104
    reference: chr 10
allele count: 4
allele frequency: 3.302509907529722e-5
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-44G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-29G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-44G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-44G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-29G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-44G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-44G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-29G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-29G>A
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-44G>A
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14731
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

10-99511105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511105
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511105
    reference: chr 10
allele count: 12
allele frequency: 9.905894006934126e-5
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-28C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-28C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-43C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-28C>T
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-28C>T
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

10-99511114-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511114
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511111
    reference: chr 10
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-31_805-29delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-31_805-29delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-16_439-14delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-31_805-29delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-31_709-29delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-16_805-14delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-31_451-29delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-16_739-14delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-16_511-14delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-31_547-29delTCT
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: CCTT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

10-99511119-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511119
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511119
    reference: chr 10
allele count: 6
allele frequency: 4.944783253667381e-5
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-29T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-14T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-29T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-14T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-14T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-29T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-14T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-29T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-29T>C
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-29T>C
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

10-99511120-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99511120
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 99511117
    reference: chr 10
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000353069
  ensembl transcript: ENST00000359980
  gene symbol: ZFYVE27
  hgvsc: ENST00000359980.3:c.805-25_805-23delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000348593
  ensembl transcript: ENST00000356257
  gene symbol: ZFYVE27
  hgvsc: ENST00000356257.4:c.805-10_805-8delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl transcript: ENST00000481956
  gene symbol: ZFYVE27
  hgvsc: ENST00000481956.1:n.439-10_439-8delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359642
  ensembl transcript: ENST00000370610
  gene symbol: ZFYVE27
  hgvsc: ENST00000370610.3:c.511-10_511-8delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000409594
  ensembl transcript: ENST00000423811
  gene symbol: ZFYVE27
  hgvsc: ENST00000423811.1:c.739-10_739-8delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000377282
  ensembl transcript: ENST00000393677
  gene symbol: ZFYVE27
  hgvsc: ENST00000393677.4:c.805-25_805-23delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000350148
  ensembl transcript: ENST00000357540
  gene symbol: ZFYVE27
  hgvsc: ENST00000357540.4:c.547-25_547-23delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000337993
  ensembl transcript: ENST00000337540
  gene symbol: ZFYVE27
  hgvsc: ENST00000337540.7:c.709-25_709-23delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000359646
  ensembl transcript: ENST00000370613
  gene symbol: ZFYVE27
  hgvsc: ENST00000370613.3:c.451-25_451-23delTCT
  variant of: http://identifiers.org/hgnc/26559
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000155256
  ensembl protein: ENSP00000401580
  ensembl transcript: ENST00000453958
  gene symbol: ZFYVE27
  hgvsc: ENST00000453958.2:c.805-25_805-23delTCT
  variant of: http://identifiers.org/hgnc/26559
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: CCTT

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22732
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847309743092584e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.137e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

DP
type: SiteQuality
SIO_000300: 2.546958e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.495e0

QD
type: SiteQuality
SIO_000300: 1.298e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22727
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5051
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.13e-1

DP
type: SiteQuality
SIO_000300: 2.544673e6

QD
type: SiteQuality
SIO_000300: 1.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

GenotypeQuality
all individuals: 427
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.835e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.541425e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.343e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.767e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 4565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.532566e6

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.258e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 3619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22730
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

DP
type: SiteQuality
SIO_000300: 2.532566e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.258e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22732
bin: 9.75e1
variant carriers: 14

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.950838860710105e-4
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.972e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.532452e6

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22696
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.508972855983407e-5
allele num: 66534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

MQ
type: SiteQuality
SIO_000300: 5.45e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

DP
type: SiteQuality
SIO_000300: 2.524009e6

FS
type: SiteQuality
SIO_000300: 4.329e0

MQRankSum
type: SiteQuality
SIO_000300: -3.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22695
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.754e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.102e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 2.517462e6

GenotypeQuality
all individuals: 1181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22693
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2789
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

DP
type: SiteQuality
SIO_000300: 2.516879e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

FS
type: SiteQuality
SIO_000300: 5.682e0

QD
type: SiteQuality
SIO_000300: 1.764e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.909e0

VQSLOD
type: SiteQuality
SIO_000300: -4.767e-1

GenotypeQuality
all individuals: 2859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35254
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 553
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5597
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.572774361615121e-5
allele num: 66026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

QD
type: SiteQuality
SIO_000300: 1.478e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 8.73e-1

DP
type: SiteQuality
SIO_000300: 2.592203e6

GenotypeQuality
all individuals: 246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514784294716432e-5
allele num: 66016
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.494060097833683e-4
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.59842e6

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35308
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.328288707799767e-4
allele num: 8590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.063e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 6.656e0

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.599283e6

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35308
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.656e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e0

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.063e1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 2.599283e6

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.587e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 2.601411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35352
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.196e0

QD
type: SiteQuality
SIO_000300: 4.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

FS
type: SiteQuality
SIO_000300: 1.927e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.605639e6

VQSLOD
type: SiteQuality
SIO_000300: -2.518e0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 34

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 106

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 541
bin: 8.25e1
variant carriers: 212

GenotypeQuality
all individuals: 4387
bin: 6.25e1
variant carriers: 145

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 30

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 111

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 64

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 79

GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 144

GenotypeQuality
all individuals: 1751
bin: 6.75e1
variant carriers: 151

GenotypeQuality
all individuals: 792
bin: 7.75e1
variant carriers: 185

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 82

GenotypeQuality
all individuals: 460
bin: 9.25e1
variant carriers: 255

European (Finnish)
type: Population
allele count: 5149
allele frequency: 7.787356321839081e-1
allele num: 6612
num of homozygotes: 2016

Other
type: Population
allele count: 604
allele frequency: 6.651982378854625e-1
allele num: 908
num of homozygotes: 199

South Asian
type: Population
allele count: 10369
allele frequency: 6.281196995396171e-1
allele num: 16508
num of homozygotes: 3300

African
type: Population
allele count: 4305
allele frequency: 4.152199074074074e-1
allele num: 10368
num of homozygotes: 907

East Asian
type: Population
allele count: 3940
allele frequency: 4.585661080074488e-1
allele num: 8592
num of homozygotes: 896

European (Non-Finnish)
type: Population
allele count: 48284
allele frequency: 7.255296769346357e-1
allele num: 66550
num of homozygotes: 17514

Latino
type: Population
allele count: 5776
allele frequency: 4.999134498874849e-1
allele num: 11554
num of homozygotes: 1498

DP
type: SiteQuality
SIO_000300: 4.089116e6

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 2.28e1

FS
type: SiteQuality
SIO_000300: 2.084e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.086e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.49e-2

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11801
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 5.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.938291e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

MQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 2.584e1

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.986e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.939009e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

FS
type: SiteQuality
SIO_000300: 2.647e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11786
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4434
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.78368999421631e-4
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 3.254e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 1.941359e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.404e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.503623733197005e-4
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 3.207e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.941131e6

QD
type: SiteQuality
SIO_000300: 1.346e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

FS
type: SiteQuality
SIO_000300: 7.356e0

QD
type: SiteQuality
SIO_000300: 1.159e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.939863e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 4408
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.32152117545376e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 1.724e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.277e0

QD
type: SiteQuality
SIO_000300: 1.309e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

DP
type: SiteQuality
SIO_000300: 1.939028e6

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4400
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

FS
type: SiteQuality
SIO_000300: 2.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.796e0

DP
type: SiteQuality
SIO_000300: 1.938195e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 3.278e0

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.208e1

DP
type: SiteQuality
SIO_000300: 1.936733e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.834e0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.278e0

QD
type: SiteQuality
SIO_000300: 1.208e1

MQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

DP
type: SiteQuality
SIO_000300: 1.936733e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.834e0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 1.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.263e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.93598e6

QD
type: SiteQuality
SIO_000300: 1.438e1

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11767
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31447
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

VQSLOD
type: SiteQuality
SIO_000300: -2.263e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.471e0

DP
type: SiteQuality
SIO_000300: 1.93598e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.666e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.644536652835408e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

DP
type: SiteQuality
SIO_000300: 1.935239e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 396
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31400
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.934549e6

FS
type: SiteQuality
SIO_000300: 1.969e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31418
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 1.934361e6

FS
type: SiteQuality
SIO_000300: 2.178e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.042e0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.186e0

QD
type: SiteQuality
SIO_000300: 9.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.931559e6

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

GenotypeQuality
all individuals: 2421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4129
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

DP
type: SiteQuality
SIO_000300: 1.931559e6

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.058e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.183e0

QD
type: SiteQuality
SIO_000300: 1.372e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.930323e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11716
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

DP
type: SiteQuality
SIO_000300: 1.929699e6

QD
type: SiteQuality
SIO_000300: 1.216e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

FS
type: SiteQuality
SIO_000300: 1.0247e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -8.424e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

FS
type: SiteQuality
SIO_000300: 6.57e-1

DP
type: SiteQuality
SIO_000300: 1.929474e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 31044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

DP
type: SiteQuality
SIO_000300: 1.926507e6

FS
type: SiteQuality
SIO_000300: 1.073e0

GenotypeQuality
all individuals: 2400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30891
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.182e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e0

DP
type: SiteQuality
SIO_000300: 1.922733e6

QD
type: SiteQuality
SIO_000300: 9.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4348
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65980
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.59e-1

FS
type: SiteQuality
SIO_000300: 1.296e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.501e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

DP
type: SiteQuality
SIO_000300: 1.921003e6

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51666818333485e-5
allele num: 65934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 1.91835e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: -1.509e0

VQSLOD
type: SiteQuality
SIO_000300: -7.537e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033980582524272e-5
allele num: 65920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 7.509e0

DP
type: SiteQuality
SIO_000300: 1.917491e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.237e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.915509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
all individuals: 891
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 8.840999999999999e0

QD
type: SiteQuality
SIO_000300: 1.432e1

DP
type: SiteQuality
SIO_000300: 1.912685e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.272e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.509e0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4318
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524204365321302e-5
allele num: 65608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.8924e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

FS
type: SiteQuality
SIO_000300: 1.6338e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.37e1

VQSLOD
type: SiteQuality
SIO_000300: -2.474e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4305
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53031555106663e-5
allele num: 65346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.861671e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.44e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10949
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.237e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.947e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 1.857662e6

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556904873112253e-5
allele num: 64230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 2.6112e1

QD
type: SiteQuality
SIO_000300: 1.086e1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.656842e6

GenotypeQuality
all individuals: 1087
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.784258608573436e-5
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.441108263151471e-4
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 2.6112e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.189e0

QD
type: SiteQuality
SIO_000300: 1.086e1

DP
type: SiteQuality
SIO_000300: 1.656842e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
all individuals: 21472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4269
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2009
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.760873393203029e-4
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.653574e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.134e1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

GenotypeQuality
all individuals: 558
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20867
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.233831000841567e-5
allele num: 64166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.529e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.637732e6

FS
type: SiteQuality
SIO_000300: 1.325e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

GenotypeQuality
all individuals: 2534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19548
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.126758801826027e-5
allele num: 63964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.096e0

DP
type: SiteQuality
SIO_000300: 1.622047e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.412e0

FS
type: SiteQuality
SIO_000300: 3.599e0

QD
type: SiteQuality
SIO_000300: 1.086e1

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

GenotypeQuality
all individuals: 3540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4864
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.528255528255529e-4
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63226
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.582729e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

MQ
type: SiteQuality
SIO_000300: 5.691e1

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

QD
type: SiteQuality
SIO_000300: 1.328e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

GenotypeQuality
all individuals: 2659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4864
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4928
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.163255622686869e-5
allele num: 63226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.623e0

MQ
type: SiteQuality
SIO_000300: 5.691e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

DP
type: SiteQuality
SIO_000300: 1.582729e6

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

GenotypeQuality
all individuals: 1424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4928
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5264
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581627811343435e-5
allele num: 63226
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.582729e6

MQ
type: SiteQuality
SIO_000300: 5.691e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

GenotypeQuality
all individuals: 539
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5020
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5661
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584585155606262e-5
allele num: 63108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -4.485e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 2.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.242e0

DP
type: SiteQuality
SIO_000300: 1.566884e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.477e0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 734
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4270
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -1.477e0

DP
type: SiteQuality
SIO_000300: 1.566884e6

VQSLOD
type: SiteQuality
SIO_000300: -4.485e0

FS
type: SiteQuality
SIO_000300: 2.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

QD
type: SiteQuality
SIO_000300: 1.46e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5820
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5669
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4271
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1155
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.225189904435187e-4
allele num: 8162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.634e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.674e1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.564099e6

MQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

GenotypeQuality
all individuals: 1242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5820
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5669
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.634e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.564099e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.674e1

GenotypeQuality
all individuals: 3974
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5513
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6711
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156119182467373e-5
allele num: 16244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

DP
type: SiteQuality
SIO_000300: 1.563087e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeQuality
all individuals: 3974
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5513
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.120466113903384e-4
allele num: 62474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.795977011494253e-4
allele num: 11136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.011e0

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.563087e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 1.469e1

FS
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 1689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 530
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14004
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12366
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1139
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186802753382388e-4
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530971554548516e-5
allele num: 65318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.199040767386091e-3
allele num: 5838
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

FS
type: SiteQuality
SIO_000300: 2.5277e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.243e0

DP
type: SiteQuality
SIO_000300: 2.321302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e0

QD
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14729
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

QD
type: SiteQuality
SIO_000300: 6.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.185e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.438e0

DP
type: SiteQuality
SIO_000300: 2.345031e6

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 5445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14727
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 2.306e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.34537e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
all individuals: 513
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14727
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

FS
type: SiteQuality
SIO_000300: 2.306e0

DP
type: SiteQuality
SIO_000300: 2.34537e6

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14730
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

FS
type: SiteQuality
SIO_000300: 2.7e0

DP
type: SiteQuality
SIO_000300: 2.359916e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

GenotypeQuality
all individuals: 179
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8604
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004563468235859e-5
allele num: 66616
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

QD
type: SiteQuality
SIO_000300: 1.385e1

FS
type: SiteQuality
SIO_000300: 4.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

DP
type: SiteQuality
SIO_000300: 2.367209e6

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14734
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 17856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503287399801856e-5
allele num: 66618
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 1.349e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 1.686e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 2.368371e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.006e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

FS
type: SiteQuality
SIO_000300: 1.2549e1

DP
type: SiteQuality
SIO_000300: 2.372124e6

QD
type: SiteQuality
SIO_000300: 1.581e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14735
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.373164e6

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.419e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 3.998e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 8.25e1
variant carriers: 0