11-57268304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268304
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268304
    reference: chr 11
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+329C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*281C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.413C>T
  hgvsp: ENSP00000435647.1:p.Ala138Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.413C>T
  hgvsp: ENSP00000435673.1:p.Ala138Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*281C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.249C>T
  hgvsp: ENSP00000435803.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.413C>T
  hgvsp: ENSP00000278426.3:p.Ala138Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.413C>T
  hgvsp: ENSP00000434312.1:p.Ala138Val
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala138Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-57268311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268311
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268311
    reference: chr 11
allele count: 1
allele frequency: 8.328058896032513e-6
allele num: 120076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.406T>C
  hgvsp: ENSP00000435673.1:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.406T>C
  hgvsp: ENSP00000278426.3:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*274T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.406T>C
  hgvsp: ENSP00000435647.1:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.406T>C
  hgvsp: ENSP00000434312.1:p.Phe136Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.242T>C
  hgvsp: ENSP00000435803.1:p.Phe82Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*274T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+322T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe136Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

11-57268317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268317
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268317
    reference: chr 11
allele count: 1
allele frequency: 8.344598541364175e-6
allele num: 119838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.236T>C
  hgvsp: ENST00000525764.1:c.236T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*268T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.400T>C
  hgvsp: ENST00000278426.3:c.400T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.400T>C
  hgvsp: ENST00000528450.1:c.400T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.400T>C
  hgvsp: ENST00000530159.1:c.400T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.400T>C
  hgvsp: ENST00000533066.1:c.400T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+316T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*268T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu134Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-57268318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268318
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268318
    reference: chr 11
allele count: 4
allele frequency: 3.33889816360601e-5
allele num: 119800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.399G>A
  hgvsp: ENST00000528450.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.399G>A
  hgvsp: ENST00000530159.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+315G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.399G>A
  hgvsp: ENST00000278426.3:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.399G>A
  hgvsp: ENST00000533066.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.235G>A
  hgvsp: ENST00000525764.1:c.235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25148
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro133Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

11-57268319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268319
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268319
    reference: chr 11
allele count: 3
allele frequency: 2.505888838771112e-5
allele num: 119718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.398C>T
  hgvsp: ENSP00000435673.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.398C>T
  hgvsp: ENSP00000278426.3:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.398C>T
  hgvsp: ENSP00000434312.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.398C>T
  hgvsp: ENSP00000435647.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.234C>T
  hgvsp: ENSP00000435803.1:p.Pro79Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+314C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro133Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-57268334-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268334
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268334
    reference: chr 11
allele count: 1
allele frequency: 8.40463263350759e-6
allele num: 118982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+299T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-6T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-6T>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22260
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
hgvs: c.389-6T>G
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

11-57268351-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268351
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268351
    reference: chr 11
allele count: 1
allele frequency: 8.484642796538266e-6
allele num: 117860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+282A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-23A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-23A>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5651
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-57268360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268360
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268360
    reference: chr 11
allele count: 1
allele frequency: 8.525585281429571e-6
allele num: 117294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+273A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-32A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-32A>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7090
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

11-57268364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268364
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268364
    reference: chr 11
allele count: 8
allele frequency: 6.867188572998215e-5
allele num: 116496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+269C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-36C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-36C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12907
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7094
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

11-57268370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268370
    reference: chr 11
allele count: 1
allele frequency: 8.616678442793871e-6
allele num: 116054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+263C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-42C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-42C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

11-57268377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268377
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268377
    reference: chr 11
allele count: 1
allele frequency: 8.734692451478784e-6
allele num: 114486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*257-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.389-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+256C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*257-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.389-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.389-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.225-49C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.389-49C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-57268421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268421
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268421
    reference: chr 11
allele count: 1
allele frequency: 1.410238330277817e-5
allele num: 70910
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+40T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+212T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+40T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4770
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-57268423-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268423
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268423
    reference: chr 11
allele count: 1
allele frequency: 1.42511044605957e-5
allele num: 70170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+210A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+38A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+38A>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

11-57268429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268429
    reference: chr 11
allele count: 1146
allele frequency: 1.663280116110305e-2
allele num: 68900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+204G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+32G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+32G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17516
  bin: 1.25e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 21627
  bin: 7.5e0
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 1.75e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 24216
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 1.75e1
  variant carriers: 9
num of homozygotes: 13
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

11-57268437-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268437
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268437
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 67326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+196C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+24C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+24C>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-57268443-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268443
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268440
    reference: chr 11
allele count: 1
allele frequency: 1.481744902797534e-5
allele num: 67488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+15_388+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+15_388+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+187_324+189delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+15_388+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+15_388+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+15_*256+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+15_224+17delCTC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+15_*256+17delCTC
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16865
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: AGAG
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

11-57268447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268447
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268447
    reference: chr 11
allele count: 12
allele frequency: 1.783697009334681e-4
allele num: 67276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+14C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+186C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+14C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22776
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4813
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26917
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

11-57268448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268448
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268448
    reference: chr 11
allele count: 1
allele frequency: 1.483591478250549e-5
allele num: 67404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.388+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.388+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*256+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.388+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*256+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.388+13T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+185T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.224+13T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4844
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/11-57268467-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268467
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268467
    reference: chr 11
allele count: 1
allele frequency: 1.497723460340283e-5
allele num: 66768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.382G>T
  hgvsp: ENSP00000434312.1:p.Val128Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.218G>T
  hgvsp: ENSP00000435803.1:p.Val74Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.382G>T
  hgvsp: ENSP00000435673.1:p.Val128Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.382G>T
  hgvsp: ENSP00000435647.1:p.Val128Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.382G>T
  hgvsp: ENSP00000278426.3:p.Val128Leu
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*250G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+166G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*250G>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val128Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-57268468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268468
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268468
    reference: chr 11
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.381C>T
  hgvsp: ENST00000528450.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.381C>T
  hgvsp: ENST00000530159.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*249C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*249C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.217C>T
  hgvsp: ENST00000525764.1:c.217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.381C>T
  hgvsp: ENST00000278426.3:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.381C>T
  hgvsp: ENST00000533066.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+165C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23189
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp127Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

11-57268471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268471
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268471
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 66990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.378G>A
  hgvsp: ENST00000528450.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.378G>A
  hgvsp: ENST00000278426.3:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.378G>A
  hgvsp: ENST00000533066.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.378G>A
  hgvsp: ENST00000530159.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+162G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.214G>A
  hgvsp: ENST00000525764.1:c.214G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23205
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg126Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

11-57268472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268472
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268472
    reference: chr 11
allele count: 4
allele frequency: 5.996462087368453e-5
allele num: 66706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.377G>A
  hgvsp: ENSP00000435647.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*245G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*245G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.377G>A
  hgvsp: ENSP00000435673.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.377G>A
  hgvsp: ENSP00000278426.3:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.377G>A
  hgvsp: ENSP00000434312.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.213G>A
  hgvsp: ENSP00000435803.1:p.Arg72Gln
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+161G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16051
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3671
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg126Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

11-57268473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268473
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268473
    reference: chr 11
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+160C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.376C>T
  hgvsp: ENSP00000435673.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.376C>T
  hgvsp: ENSP00000435647.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.376C>T
  hgvsp: ENSP00000278426.3:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.212C>T
  hgvsp: ENSP00000435803.1:p.Arg72Trp
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.376C>T
  hgvsp: ENSP00000434312.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16031
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg126Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

11-57268489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268489
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268489
    reference: chr 11
allele count: 1
allele frequency: 1.449779633495709e-5
allele num: 68976
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.360C>T
  hgvsp: ENST00000278426.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.196C>T
  hgvsp: ENST00000525764.1:c.196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.360C>T
  hgvsp: ENST00000533066.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.360C>T
  hgvsp: ENST00000530159.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+144C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.360C>T
  hgvsp: ENST00000528450.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu120Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-57268491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268491
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268491
    reference: chr 11
allele count: 1
allele frequency: 1.444293596002195e-5
allele num: 69238
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.358C>T
  hgvsp: ENSP00000278426.3:p.Leu120Phe
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.194C>T
  hgvsp: ENSP00000435803.1:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+142C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.358C>T
  hgvsp: ENSP00000434312.1:p.Leu120Phe
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.358C>T
  hgvsp: ENSP00000435673.1:p.Leu120Phe
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*226C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.358C>T
  hgvsp: ENSP00000435647.1:p.Leu120Phe
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*226C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22692
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu120Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57268493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268493
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268493
    reference: chr 11
allele count: 88
allele frequency: 1.267208110131905e-3
allele num: 69444
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.356C>T
  hgvsp: ENSP00000278426.3:p.Thr119Ile
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.356C>T
  hgvsp: ENSP00000435673.1:p.Thr119Ile
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.192C>T
  hgvsp: ENSP00000435803.1:p.Thr65Ile
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.356C>T
  hgvsp: ENSP00000434312.1:p.Thr119Ile
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+140C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.356C>T
  hgvsp: ENSP00000435647.1:p.Thr119Ile
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*224C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*224C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22591
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15749
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 9.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr119Ile
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-57268501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268501
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268501
    reference: chr 11
allele count: 10
allele frequency: 1.420051121840386e-4
allele num: 70420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.348G>A
  hgvsp: ENST00000528450.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.184G>A
  hgvsp: ENST00000525764.1:c.184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*216G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.348G>A
  hgvsp: ENST00000533066.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*216G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.348G>A
  hgvsp: ENST00000278426.3:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.348G>A
  hgvsp: ENST00000530159.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+132G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15908
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala116Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

11-57268502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268502
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268502
    reference: chr 11
allele count: 2
allele frequency: 2.840666988608925e-5
allele num: 70406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.183C>T
  hgvsp: ENSP00000435803.1:p.Ala62Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*215C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.347C>T
  hgvsp: ENSP00000278426.3:p.Ala116Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.347C>T
  hgvsp: ENSP00000435647.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.347C>T
  hgvsp: ENSP00000434312.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.347C>T
  hgvsp: ENSP00000435673.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*215C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+131C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala116Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-57268509-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268509
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268509
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 71738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.176T>G
  hgvsp: ENSP00000435803.1:p.Phe60Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+124T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*208T>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.340T>G
  hgvsp: ENSP00000278426.3:p.Phe114Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.340T>G
  hgvsp: ENSP00000435673.1:p.Phe114Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.340T>G
  hgvsp: ENSP00000434312.1:p.Phe114Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.340T>G
  hgvsp: ENSP00000435647.1:p.Phe114Val
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*208T>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22052
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe114Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

11-57268522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268522
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268522
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 73374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+111C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-6C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-6C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
hgvs: c.333-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-57268531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268531
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268531
    reference: chr 11
allele count: 1
allele frequency: 1.338114863779907e-5
allele num: 74732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+102C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-15C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-15C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

11-57268534-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268534
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268534
    reference: chr 11
allele count: 11
allele frequency: 1.456644949414694e-4
allele num: 75516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+99T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20597
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

11-57268538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268538
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268538
    reference: chr 11
allele count: 1
allele frequency: 1.326084073730275e-5
allele num: 75410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+95G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-22G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-22G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-57268539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268539
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268539
    reference: chr 11
allele count: 2
allele frequency: 2.616294280780702e-5
allele num: 76444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+94C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-23C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-23C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

11-57268539-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268539
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268539
    reference: chr 11
allele count: 1
allele frequency: 1.308147140390351e-5
allele num: 76444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+94C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-23C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-23C>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

11-57268541-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268541
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268541
    reference: chr 11
allele count: 1
allele frequency: 1.297589079490307e-5
allele num: 77066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+92C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-25C>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-25C>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-57268547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268547
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268547
    reference: chr 11
allele count: 1
allele frequency: 1.278772378516624e-5
allele num: 78200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+86C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-31C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-31C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-57268554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268554
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268554
    reference: chr 11
allele count: 1
allele frequency: 1.249406531897349e-5
allele num: 80038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+79C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-38C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-38C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/11-57268558-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268558
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
allele count: 13
allele frequency: 1.639716455185288e-4
allele num: 79282
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-43dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+74dupG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-43dupG
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21094
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/11-57268558-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268558
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268557
    reference: chr 11
allele count: 14
allele frequency: 1.765848490199541e-4
allele num: 79282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+74delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-43delG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-43delG
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7489
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: AC
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-57268559-C-CGGCCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268566
    reference: chr 11
allele count: 1
allele frequency: 1.248345941627344e-5
allele num: 80106
alternate allele: CGGCCCCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-44_169-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+73_324+74insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-44_333-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-44_333-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-44_333-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-44_*201-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-44_333-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-44_*201-43insAGGGGCC
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-57268559-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
allele count: 2
allele frequency: 2.496691883254688e-5
allele num: 80106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+74G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-43G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-43G>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

11-57268559-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268559
    reference: chr 11
allele count: 1
allele frequency: 1.248345941627344e-5
allele num: 80106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+74G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-43G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-43G>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/11-57268560-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268560
    reference: chr 11
allele count: 1
allele frequency: 1.231982259455464e-5
allele num: 81170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-44G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+73G>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-57268560-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268560
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268560
    reference: chr 11
allele count: 1
allele frequency: 1.231982259455464e-5
allele num: 81170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-44G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+73G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-44G>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5164
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

11-57268562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268562
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268562
    reference: chr 11
allele count: 2
allele frequency: 2.375466185238853e-5
allele num: 84194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+71G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-46G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-46G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19904
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

11-57268564-C-CAGCCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268564
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268570
    reference: chr 11
allele count: 1
allele frequency: 1.168579241358356e-5
allele num: 85574
alternate allele: CAGCCCA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-49_*201-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-49_333-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-49_169-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-49_333-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+68_324+69insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-49_*201-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-49_333-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-49_333-48insTGGGCT
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-57268564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268564
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268564
    reference: chr 11
allele count: 6
allele frequency: 7.011475448150139e-5
allele num: 85574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+69G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-48G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-48G>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

11-57268564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268564
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268564
    reference: chr 11
allele count: 1
allele frequency: 1.168579241358356e-5
allele num: 85574
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+69G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-48G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-48G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

11-57268566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268566
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268566
    reference: chr 11
allele count: 1
allele frequency: 1.157434199865738e-5
allele num: 86398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.333-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.333-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.169-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.333-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.333-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+67A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*201-50A>G
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*201-50A>G
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

11-57268567-C-CATACTGCCCTCACCCCACTCACTCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268567
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268593
    reference: chr 11
allele count: 1
allele frequency: 1.145475372279496e-5
allele num: 87300
alternate allele: CATACTGCCCTCACCCCACTCACTCTG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

11-57268575-C-CCAAGGGCGGGAGCTGGGGTAAACATCCGCCTTCATCCCACCTATTCTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268575
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268625
    reference: chr 11
allele count: 1
allele frequency: 8.771006560712907e-6
allele num: 114012
alternate allele: CCAAGGGCGGGAGCTGGGGTAAACATCCGCCTTCATCCCACCTATTCTTTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

11-57268580-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268580
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268580
    reference: chr 11
allele count: 1
allele frequency: 8.781944322472995e-6
allele num: 113870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+53T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+45T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+45T>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

11-57268584-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268584
    reference: chr 11
allele count: 12
allele frequency: 1.047632350886995e-4
allele num: 114544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+49G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+41G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+41G>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21356
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

11-57268584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268584
    reference: chr 11
allele count: 1
allele frequency: 8.730269590724962e-6
allele num: 114544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+49G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+41G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+41G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-57268585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268585
    reference: chr 11
allele count: 17
allele frequency: 1.483627731620471e-4
allele num: 114584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+48C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+40C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+40C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

11-57268585-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268585
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268585
    reference: chr 11
allele count: 4
allele frequency: 3.49088878028346e-5
allele num: 114584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+48C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+40C>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+40C>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-57268598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268598
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268598
    reference: chr 11
allele count: 2
allele frequency: 1.721348159878817e-5
allele num: 116188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+27G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+35G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+27G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-57268599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268599
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268599
    reference: chr 11
allele count: 2651
allele frequency: 2.28007706333643e-2
allele num: 116268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+34G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+26G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+26G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 2.75e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 3.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 28653
  bin: 2.25e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 33
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

11-57268600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268600
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268600
    reference: chr 11
allele count: 3
allele frequency: 2.571002519582469e-5
allele num: 116686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+25C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+33C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+25C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16963
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29283
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

11-57268604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268604
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268604
    reference: chr 11
allele count: 4
allele frequency: 3.410292262046858e-5
allele num: 117292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+29G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+21G>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+21G>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-57268607-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268607
    reference: chr 11
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+26T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+18T>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+18T>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-57268608-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268608
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268608
    reference: chr 11
allele count: 1
allele frequency: 8.494156020657787e-6
allele num: 117728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+17A>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+25A>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS

11-57268615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268615
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268615
    reference: chr 11
allele count: 2
allele frequency: 1.689303331306169e-5
allele num: 118392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+18C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+10C>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+10C>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

11-57268615-GCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268615
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268613
    reference: chr 11
allele count: 1
allele frequency: 8.446516656530846e-6
allele num: 118392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+8_332+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+16_324+17delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+8_*200+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+8_168+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+8_332+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+8_*200+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+8_332+9delGG
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+8_332+9delGG
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 18349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: c.332+8_332+9delGG
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: GCC
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/11-57268616-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268616
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268616
    reference: chr 11
allele count: 88
allele frequency: 7.788024142874843e-4
allele num: 112994
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+17G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+9G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+9G>T
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18388
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 25586
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 4.25e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

11-57268618-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268618
    reference: chr 11
allele count: 1
allele frequency: 8.404350091607416e-6
allele num: 118986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+7T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+15T>A
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+7T>A
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
hgvs: c.332+7T>A
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

11-57268624-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268624
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268624
    reference: chr 11
allele count: 2
allele frequency: 1.674032409267444e-5
allele num: 119472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*200+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+9G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.332+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.332+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.332+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.332+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.168+1G>C
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*200+1G>C
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
hgvs: c.332+1G>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-57268626-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268626
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268626
    reference: chr 11
allele count: 4
allele frequency: 3.345992337677547e-5
allele num: 119546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.331A>T
  hgvsp: ENSP00000435673.1:p.Ser111Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*199A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+7A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.167A>T
  hgvsp: ENSP00000435803.1:p.Ser57Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.331A>T
  hgvsp: ENSP00000434312.1:p.Ser111Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.331A>T
  hgvsp: ENSP00000435647.1:p.Ser111Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.331A>T
  hgvsp: ENSP00000278426.3:p.Ser111Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*199A>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435486
  ensembl transcript: ENST00000533263
  gene symbol: SLC43A1
  hgvsc: ENST00000533263.1:c.331A>T
  hgvsp: ENST00000533263.1:c.331A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser111Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/11-57268629-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268629
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268629
    reference: chr 11
allele count: 3
allele frequency: 2.5067263824596e-5
allele num: 119678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.164G>T
  hgvsp: ENSP00000435803.1:p.Gly56Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*196G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.328G>T
  hgvsp: ENSP00000435673.1:p.Gly110Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.328G>T
  hgvsp: ENSP00000435647.1:p.Gly110Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435486
  ensembl transcript: ENST00000533263
  gene symbol: SLC43A1
  hgvsc: ENST00000533263.1:c.328G>T
  hgvsp: ENSP00000435486.1:p.Gly110Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.328G>T
  hgvsp: ENSP00000434312.1:p.Gly110Cys
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324+4G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*196G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.328G>T
  hgvsp: ENSP00000278426.3:p.Gly110Cys
  variant of: http://identifiers.org/hgnc/9225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly110Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/11-57268633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57268633
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 57268633
    reference: chr 11
allele count: 7
allele frequency: 5.840926537832516e-5
allele num: 119844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432241
  ensembl transcript: ENST00000534105
  gene symbol: SLC43A1
  hgvsc: ENST00000534105.1:c.*192G>T
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435673
  ensembl transcript: ENST00000528450
  gene symbol: SLC43A1
  hgvsc: ENST00000528450.1:c.324G>T
  hgvsp: ENST00000528450.1:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000433453
  ensembl transcript: ENST00000534298
  gene symbol: SLC43A1
  hgvsc: ENST00000534298.1:c.324G>T
  hgvsp: ENST00000534298.1:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435803
  ensembl transcript: ENST00000525764
  gene symbol: SLC43A1
  hgvsc: ENST00000525764.1:c.160G>T
  hgvsp: ENST00000525764.1:c.160G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435486
  ensembl transcript: ENST00000533263
  gene symbol: SLC43A1
  hgvsc: ENST00000533263.1:c.324G>T
  hgvsp: ENST00000533263.1:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000435647
  ensembl transcript: ENST00000533066
  gene symbol: SLC43A1
  hgvsc: ENST00000533066.1:c.324G>T
  hgvsp: ENST00000533066.1:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000434312
  ensembl transcript: ENST00000530159
  gene symbol: SLC43A1
  hgvsc: ENST00000530159.1:c.324G>T
  hgvsp: ENST00000530159.1:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000278426
  ensembl transcript: ENST00000278426
  gene symbol: SLC43A1
  hgvsc: ENST00000278426.3:c.324G>T
  hgvsp: ENST00000278426.3:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9225
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149150
  ensembl protein: ENSP00000432361
  ensembl transcript: ENST00000524995
  gene symbol: SLC43A1
  hgvsc: ENST00000524995.1:c.*192G>T
  variant of: http://identifiers.org/hgnc/9225
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 3.25e1
  variant carriers: 1
hgvs: c.324G>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

DP
type: SiteQuality
SIO_000300: 1.74714e6

FS
type: SiteQuality
SIO_000300: 5.973e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.281e0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1298
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.740837e6

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 6.034e0

QD
type: SiteQuality
SIO_000300: 9.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

GenotypeQuality
all individuals: 1661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 549
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.377e0

FS
type: SiteQuality
SIO_000300: 1.263e0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.23e1

DP
type: SiteQuality
SIO_000300: 1.732914e6

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7095
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36305
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040715176209444e-5
allele num: 65774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.827044025157233e-5
allele num: 10176
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

QD
type: SiteQuality
SIO_000300: 1.122e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.733792e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
all individuals: 7096
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 701
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.827044025157233e-5
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043306247907727e-5
allele num: 65718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 1.731654e6

GenotypeQuality
all individuals: 468
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5825
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33003
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variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
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variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.902951079421667e-5
allele num: 10098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.531e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 1.693978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
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GenotypeQuality
all individuals: 1806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.89521437466643e-5
allele num: 11242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.908e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.021e0

VQSLOD
type: SiteQuality
SIO_000300: -7.322e-1

DP
type: SiteQuality
SIO_000300: 1.594297e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.059e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 19474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
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GenotypeQuality
all individuals: 1371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555113212241851e-5
allele num: 64304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.722e-1

DP
type: SiteQuality
SIO_000300: 1.554557e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

FS
type: SiteQuality
SIO_000300: 1.235e0

MQRankSum
type: SiteQuality
SIO_000300: -1.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.067e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.05e0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
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variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.581277672359266e-4
allele num: 6324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.706449221645663e-4
allele num: 16188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565729316715726e-5
allele num: 63868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.531698e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5801
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572129291912967e-5
allele num: 63608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.514357e6

VQSLOD
type: SiteQuality
SIO_000300: 4.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.601e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593574706782254e-5
allele num: 62752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.501047e6

QD
type: SiteQuality
SIO_000300: 1.179e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 1.909e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

GenotypeQuality
all individuals: 4863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 625
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.301510874979246e-5
allele num: 12046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.545e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.516e1

VQSLOD
type: SiteQuality
SIO_000300: -8.573e-1

DP
type: SiteQuality
SIO_000300: 1.005426e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.147e0

GenotypeQuality
all individuals: 23903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.355614973262032e-5
allele num: 11968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.00065e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.605e0

FS
type: SiteQuality
SIO_000300: 6.373e0

VQSLOD
type: SiteQuality
SIO_000300: -2.09e0

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 4488
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 695
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 39

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 2169
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1246
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 411
bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 646
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 672
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5277
bin: 9.75e1
variant carriers: 1135

GenotypeQuality
all individuals: 3535
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 45

African
type: Population
allele count: 33
allele frequency: 5.425846760933903e-3
allele num: 6082
num of homozygotes: 1

South Asian
type: Population
allele count: 103
allele frequency: 8.703735000845023e-3
allele num: 11834
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 873
allele frequency: 2.265649330426658e-2
allele num: 38532
num of homozygotes: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.691729323308271e-2
allele num: 532
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 29
allele frequency: 9.911141490088858e-3
allele num: 2926
num of homozygotes: 0

Latino
type: Population
allele count: 99
allele frequency: 2.080706179066835e-2
allele num: 4758
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.398e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

DP
type: SiteQuality
SIO_000300: 9.96937e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
all individuals: 1262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 9.77293e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 8.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 4436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
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variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
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variant carriers: 0

GenotypeQuality
all individuals: 4522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1925
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.65717170643567e-5
allele num: 37634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.78609e5

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 6.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQ
type: SiteQuality
SIO_000300: 5.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 2.615518744551003e-3
allele num: 4588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.77887e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.076e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 1552
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 1270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4402
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11668
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.664447403462051e-4
allele num: 6008
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 6.532e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 9.77602e5

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 1645
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4229
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.683987331579795e-5
allele num: 37258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

DP
type: SiteQuality
SIO_000300: 9.80883e5

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 2.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 6.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.607333448097779e-5
allele num: 11618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37204
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.81786e5

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 7.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.743e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 9.85761e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 9.34e0

GenotypeQuality
all individuals: 27014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.194907813871817e-4
allele num: 4556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.579535683576956e-4
allele num: 11630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

FS
type: SiteQuality
SIO_000300: 5.871e0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 2.112e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

DP
type: SiteQuality
SIO_000300: 9.88137e5

GenotypeQuality
all individuals: 26472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.595495960116899e-5
allele num: 11634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.692224854619858e-5
allele num: 37144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
SIO_000300: 4.503e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 9.88299e5

GenotypeQuality
all individuals: 1649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.599833610648919e-5
allele num: 38464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

DP
type: SiteQuality
SIO_000300: 1.005208e6

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.931e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
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GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.593226492401846e-5
allele num: 38562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

FS
type: SiteQuality
SIO_000300: 9.326000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.009327e6

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 626
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GenotypeQuality
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GenotypeQuality
all individuals: 6163
bin: 6.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.051702913418137e-4
allele num: 4874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.372404554588077e-5
allele num: 11944
num of homozygotes: 0

African
type: Population
allele count: 86
allele frequency: 1.378647002244309e-2
allele num: 6238
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.010178e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
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GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 364
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GenotypeQuality
all individuals: 26367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 7.473841554559044e-4
allele num: 12042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.549069589599796e-5
allele num: 39230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.071e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

FS
type: SiteQuality
SIO_000300: 1.766e0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.013791e6

GenotypeQuality
all individuals: 418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.549849558876026e-5
allele num: 39218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.981767736821245e-4
allele num: 5046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12038
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

DP
type: SiteQuality
SIO_000300: 1.014891e6

FS
type: SiteQuality
SIO_000300: 7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

QD
type: SiteQuality
SIO_000300: 6.54e0

VQSLOD
type: SiteQuality
SIO_000300: -8.409e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 535
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4449
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GenotypeQuality
all individuals: 6426
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2662
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 2.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.652e0

MQRankSum
type: SiteQuality
SIO_000300: -1.881e0

QD
type: SiteQuality
SIO_000300: 7.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.415e0

DP
type: SiteQuality
SIO_000300: 1.022567e6

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4206
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

QD
type: SiteQuality
SIO_000300: 6.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.198e0

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.035547e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeQuality
all individuals: 365
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.5e0
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GenotypeQuality
all individuals: 763
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6148
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variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.408013870159892e-5
allele num: 41528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.513e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.459e0

DP
type: SiteQuality
SIO_000300: 1.046076e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 5.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25366
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
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GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 857
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variant carriers: 0

GenotypeQuality
all individuals: 6770
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.382200200104817e-4
allele num: 41978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.845018450184502e-3
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.05057e6

QD
type: SiteQuality
SIO_000300: 1.216e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 2069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.751313485113835e-4
allele num: 5710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.203e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.05521e6

QD
type: SiteQuality
SIO_000300: 1.23e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

GenotypeQuality
all individuals: 815
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
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GenotypeQuality
all individuals: 1230
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.708817498291183e-4
allele num: 5852
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.920860545524395e-4
allele num: 5206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42522
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.102e1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.439e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.062947e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 815
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.369272237196766e-4
allele num: 2968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 1.102e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.062947e6

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

FS
type: SiteQuality
SIO_000300: 4.439e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 7807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 805
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.685203909673071e-4
allele num: 5934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

VQSLOD
type: SiteQuality
SIO_000300: -8.250999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.068553e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.935e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 2.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

QD
type: SiteQuality
SIO_000300: 1.127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.299273429596248e-5
allele num: 43492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.651e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.077223e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

GenotypeQuality
all individuals: 1091
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4807
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.439677512237259e-4
allele num: 6946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.09534e6

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4121
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1629
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variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.097111667045713e-5
allele num: 43970
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.099333643266698e-4
allele num: 12906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 7.886435331230284e-4
allele num: 6340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.928e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.109143e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.61e0

GenotypeQuality
all individuals: 1629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3056
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variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.462415911085113e-4
allele num: 6838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.274277916761428e-4
allele num: 43970
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.632401017072285e-4
allele num: 5506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.748334108166744e-5
allele num: 12906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.928e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.109143e6

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4707
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variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.445922498554077e-4
allele num: 6916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.5264e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 2.106e1

DP
type: SiteQuality
SIO_000300: 1.11494e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.445922498554077e-4
allele num: 6916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.724393635099645e-5
allele num: 12946
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 2.5264e1

QD
type: SiteQuality
SIO_000300: 2.106e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.11494e6

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3053
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44420
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.724393635099645e-5
allele num: 12946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.5264e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

DP
type: SiteQuality
SIO_000300: 1.11494e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 2.106e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 20677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1704
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GenotypeQuality
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GenotypeQuality
all individuals: 1294
bin: 4.25e1
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GenotypeQuality
all individuals: 722
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.219066216935913e-5
allele num: 45064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13048
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.648e0

DP
type: SiteQuality
SIO_000300: 1.121291e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
all individuals: 1850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13048
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.428571428571429e-4
allele num: 7000
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.648e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 1.121291e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.843332385555871e-4
allele num: 7034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46678
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

QD
type: SiteQuality
SIO_000300: 7.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

FS
type: SiteQuality
SIO_000300: 1.216e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.132297e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

GenotypeQuality
all individuals: 1047
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.371365880416895e-4
allele num: 7292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.079e-1

FS
type: SiteQuality
SIO_000300: 1.3622e1

DP
type: SiteQuality
SIO_000300: 1.14482e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.622e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.677852348993289e-3
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.053341198280947e-4
allele num: 47468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3622e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.14482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

QD
type: SiteQuality
SIO_000300: 1.622e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.079e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 1413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9297
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.425007425007424e-5
allele num: 13468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.079e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.3622e1

DP
type: SiteQuality
SIO_000300: 1.14482e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10974
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.370238421485339e-4
allele num: 7298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.722e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.163184e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18920
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3662
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.350256548744261e-4
allele num: 7406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.514e0

FS
type: SiteQuality
SIO_000300: 6.0175e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -4.756e0

QD
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: -6.442e0

DP
type: SiteQuality
SIO_000300: 1.1708e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.863e1

GenotypeQuality
all individuals: 1195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596780889726312e-5
allele num: 62626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: -1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.752e1

MQRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.08279e2

QD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.268375e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 750
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variant carriers: 1

GenotypeQuality
all individuals: 24381
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595914458984998e-5
allele num: 62660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

FS
type: SiteQuality
SIO_000300: 3.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

DP
type: SiteQuality
SIO_000300: 1.280149e6

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

QD
type: SiteQuality
SIO_000300: 1.48e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.509386733416771e-4
allele num: 15980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.306797e6

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2027
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28585
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587553579933323e-5
allele num: 62990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.306797e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 31194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1875
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.250156269533692e-4
allele num: 15998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.746031746031746e-4
allele num: 63000
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.099173553719008e-4
allele num: 9680
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197891710589363e-4
allele num: 8348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.321973e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 5.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 31194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3833
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 2.5e0
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GenotypeQuality
all individuals: 1875
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
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variant carriers: 2

GenotypeQuality
all individuals: 1652
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.250781347668459e-5
allele num: 15998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.761904761904762e-5
allele num: 63000
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.188e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 1.321973e6

FS
type: SiteQuality
SIO_000300: 5.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 38895
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 562
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variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.130184367859267e-5
allele num: 63894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 3.064e0

VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.402652e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 1420
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 37646
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 5489
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1248
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3153
bin: 9.75e1
variant carriers: 2576

GenotypeQuality
all individuals: 1507
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 13

Other
type: Population
allele count: 12
allele frequency: 1.428571428571429e-2
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 133
allele frequency: 1.18601747815231e-2
allele num: 11214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2259
allele frequency: 3.532336752564423e-2
allele num: 63952
num of homozygotes: 32

East Asian
type: Population
allele count: 1
allele frequency: 1.187366421277606e-4
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.182033096926714e-3
allele num: 16074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 165
allele frequency: 2.789046653144016e-2
allele num: 5916
num of homozygotes: 1

African
type: Population
allele count: 62
allele frequency: 6.294416243654823e-3
allele num: 9850
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

DP
type: SiteQuality
SIO_000300: 1.428069e6

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780626780626781e-4
allele num: 11232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55724430048586e-5
allele num: 64216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.421682e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

FS
type: SiteQuality
SIO_000300: 7.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.334e1

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
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GenotypeQuality
all individuals: 573
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6180
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.014098690835851e-4
allele num: 9930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100198412698413e-5
allele num: 64512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.256e0

DP
type: SiteQuality
SIO_000300: 1.438673e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.376e0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1015
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545929567448907e-5
allele num: 64686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.421e-1

FS
type: SiteQuality
SIO_000300: 9.505000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.917e0

DP
type: SiteQuality
SIO_000300: 1.447082e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545212930341801e-5
allele num: 64716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.818e1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e-1

DP
type: SiteQuality
SIO_000300: 1.449649e6

FS
type: SiteQuality
SIO_000300: 4.063e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.756234632946962e-4
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.49e-1

FS
type: SiteQuality
SIO_000300: 1.4113e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

DP
type: SiteQuality
SIO_000300: 1.467999e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.467999e6

FS
type: SiteQuality
SIO_000300: 1.4113e1

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.858e1

VQSLOD
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
all individuals: 1546
bin: 3.75e1
variant carriers: 12

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1836
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GenotypeQuality
all individuals: 1160
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variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.225490196078431e-3
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.33598826241878e-4
allele num: 9542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 8.151392129910815e-4
allele num: 62566
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.542976558240959e-4
allele num: 11006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.773668639053254e-3
allele num: 5408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.349206349206349e-5
allele num: 15750
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.011889704022261e-3
allele num: 7906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 2.015e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.566814e6

QD
type: SiteQuality
SIO_000300: 2.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.338e0

VQSLOD
type: SiteQuality
SIO_000300: -3.145e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530737203036983e-5
allele num: 65328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

QD
type: SiteQuality
SIO_000300: 2.225e1

MQRankSum
type: SiteQuality
SIO_000300: -2.629e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.279e0

MQ
type: SiteQuality
SIO_000300: 5.283e1

DP
type: SiteQuality
SIO_000300: 1.515067e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220256253813301e-4
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.524813e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.096817461285209e-5
allele num: 65608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.530631e6