10-112044553-G-GTTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044553
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044556
    reference: chr 10
allele count: 63039
allele frequency: 5.666019522191663e-1
allele num: 111258
alternate allele: GTTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-23_524-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-23_1073-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-23_716-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-23_416-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-23_548-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-23_494-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-23_725-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-23_386-21dupCTT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 1356
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 2.25e1
  variant carriers: 11629
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 2372
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.75e1
  variant carriers: 4640
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 1.25e1
  variant carriers: 5075
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 1.75e1
  variant carriers: 9275
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 2.75e1
  variant carriers: 11003
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 1291
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 638
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 828
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.25e1
  variant carriers: 7888
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 1001
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 2.5e0
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.5e0
  variant carriers: 817
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 1030
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 5.75e1
  variant carriers: 1834
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 1585
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 8.25e1
  variant carriers: 1287
genotype quality: GenotypeQuality
  all individuals: 31319
  bin: 9.75e1
  variant carriers: 31078
num of homozygotes: 9555
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

10-112044553-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044553
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044550
    reference: chr 10
allele count: 66
allele frequency: 5.932157687537076e-4
allele num: 111258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-23_548-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-23_716-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-23_524-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-23_386-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-23_725-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-23_416-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-23_494-21delCTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-23_1073-21delCTT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: GTTC
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

10-112044556-CTTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044556
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044551
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 118758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-23_548-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-23_716-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-23_1073-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-23_416-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-23_524-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-23_386-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-23_494-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-23_725-19delCTTTT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: CTTCTT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

10-112044559-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044560
    reference: chr 10
allele count: 432
allele frequency: 5.077215993230379e-3
allele num: 85086
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-11dupT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-11dupT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 65
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

10-112044559-C-CTTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044563
    reference: chr 10
allele count: 4440
allele frequency: 5.218249770820112e-2
allele num: 85086
alternate allele: CTTCT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-21_1073-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-21_725-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-21_416-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-21_386-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-21_494-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-21_716-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-21_548-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-21_524-20insCTTT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 1016
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 1602
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 404
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 1240
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 1442
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 697
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 677
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 687
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.5e0
  variant carriers: 744
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 534
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 309
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 470
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 8931
  bin: 2.5e0
  variant carriers: 634
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

10-112044559-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044558
    reference: chr 10
allele count: 1417
allele frequency: 1.665373857038761e-2
allele num: 85086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-11delT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-11delT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 395
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 4.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 9.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 200
genotype quality: GenotypeQuality
  all individuals: 8931
  bin: 2.5e0
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 1.25e1
  variant carriers: 242
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: CT
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-112044559-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044557
    reference: chr 10
allele count: 149
allele frequency: 1.751169405072515e-3
allele num: 85086
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-12_725-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-12_1073-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-12_416-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-12_524-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-12_716-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-12_494-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-12_548-11delTT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-12_386-11delTT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.5e0
  variant carriers: 45
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: CTT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

10-112044559-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044559
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044556
    reference: chr 10
allele count: 3
allele frequency: 3.525844439743319e-5
allele num: 85086
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9734
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8931
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.447596988998263e-4
  allele num: 6908
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 4.257311933245349e-5
  allele num: 46978
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6430
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5228
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
reference allele: CTTT
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

10-112044560-T-TTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044560
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044562
    reference: chr 10
allele count: 10592
allele frequency: 1.846132394464391e-1
allele num: 57374
alternate allele: TTC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-21_1073-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-21_386-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-21_524-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-21_725-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-21_716-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-21_416-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-21_548-20insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-21_494-20insCT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 4.25e1
  variant carriers: 1172
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 3.25e1
  variant carriers: 2891
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 2.75e1
  variant carriers: 2895
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 1.75e1
  variant carriers: 1447
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 4.75e1
  variant carriers: 670
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.25e1
  variant carriers: 557
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.25e1
  variant carriers: 2422
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 3.75e1
  variant carriers: 2084
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 1160
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 490
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 5.25e1
  variant carriers: 664
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 6.75e1
  variant carriers: 461
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 5.75e1
  variant carriers: 588
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 2.75e1
  variant carriers: 1041
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 9.25e1
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 1.25e1
  variant carriers: 1125
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

10-112044561-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044561
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044562
    reference: chr 10
allele count: 633
allele frequency: 2.211430967020682e-2
allele num: 28624
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-21_548-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-21_716-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-21_416-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-21_1073-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-21_725-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-21_494-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-21_524-20insC
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-21_386-20insC
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8253
  bin: 3.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 2.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 1.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8772
  bin: 3.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 4.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 40104
  bin: 2.5e0
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 2.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 90
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

10-112044562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044562
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044562
    reference: chr 10
allele count: 29
allele frequency: 3.039449964365069e-4
allele num: 95412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-20T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-20T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5021
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-112044562-T-TTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044562
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044564
    reference: chr 10
allele count: 2
allele frequency: 2.096172389217289e-5
allele num: 95412
alternate allele: TTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-19_416-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-19_548-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-19_716-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-19_725-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-19_494-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-19_524-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-19_386-18insCT
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-19_1073-18insCT
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8697
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

10-112044563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044563
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044563
    reference: chr 10
allele count: 5
allele frequency: 4.16680556018534e-5
allele num: 119996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-19T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-19T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8922
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

10-112044565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044565
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044565
    reference: chr 10
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-17T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-17T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23539
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

10-112044572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044572
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044572
    reference: chr 10
allele count: 3
allele frequency: 2.561344193432714e-5
allele num: 117126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-10C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-10C>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-112044577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044577
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044577
    reference: chr 10
allele count: 904
allele frequency: 7.500829737802854e-3
allele num: 120520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.416-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.494-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.524-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.716-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.386-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.725-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1073-5G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.548-5G>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 3.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 25746
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 3.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 4468
  bin: 9.75e1
  variant carriers: 876
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
hgvs: c.725-5G>T
num of homozygotes: 15
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-112044585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044585
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044585
    reference: chr 10
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.551A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.389A>G
  hgvsp: ENSP00000354606.4:p.Glu130Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.728A>G
  hgvsp: ENSP00000331152.5:p.Glu243Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.527A>G
  hgvsp: ENSP00000239007.7:p.Glu176Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1076A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.719A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.419A>G
  hgvsp: ENSP00000358625.1:p.Glu140Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.497A>G
  hgvsp: ENSP00000376842.1:p.Glu166Gly
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu243Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

10-112044586-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044586
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044586
    reference: chr 10
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.498G>C
  hgvsp: ENSP00000376842.1:p.Glu166Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.420G>C
  hgvsp: ENSP00000358625.1:p.Glu140Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.528G>C
  hgvsp: ENSP00000239007.7:p.Glu176Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.390G>C
  hgvsp: ENSP00000354606.4:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.729G>C
  hgvsp: ENSP00000331152.5:p.Glu243Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1077G>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.720G>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.552G>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu243Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

10-112044595-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044595
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044595
    reference: chr 10
allele count: 2
allele frequency: 1.654259718775848e-5
allele num: 120900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.537G>C
  hgvsp: ENST00000239007.7:c.537G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1086G>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.738G>C
  hgvsp: ENST00000332674.5:c.738G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.561G>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.399G>C
  hgvsp: ENST00000361248.4:c.399G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.729G>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.507G>C
  hgvsp: ENST00000393134.1:c.507G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.429G>C
  hgvsp: ENST00000369612.1:c.429G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val246Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/10-112044604-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044604
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044604
    reference: chr 10
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.408A>C
  hgvsp: ENSP00000354606.4:p.Glu136Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.516A>C
  hgvsp: ENSP00000376842.1:p.Glu172Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.738A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.546A>C
  hgvsp: ENSP00000239007.7:p.Glu182Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.747A>C
  hgvsp: ENSP00000331152.5:p.Glu249Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.570A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.438A>C
  hgvsp: ENSP00000358625.1:p.Glu146Asp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1095A>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu249Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

10-112044612-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044612
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044612
    reference: chr 10
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.578A>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.416A>T
  hgvsp: ENSP00000354606.4:p.Glu139Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.524A>T
  hgvsp: ENSP00000376842.1:p.Glu175Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.554A>T
  hgvsp: ENSP00000239007.7:p.Glu185Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.755A>T
  hgvsp: ENSP00000331152.5:p.Glu252Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.446A>T
  hgvsp: ENSP00000358625.1:p.Glu149Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.746A>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1103A>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu252Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

10-112044613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044613
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044613
    reference: chr 10
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.747G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.756G>A
  hgvsp: ENST00000332674.5:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.417G>A
  hgvsp: ENST00000361248.4:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.447G>A
  hgvsp: ENST00000369612.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.555G>A
  hgvsp: ENST00000239007.7:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1104G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.525G>A
  hgvsp: ENST00000393134.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.579G>A
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu252Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

10-112044618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044618
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044618
    reference: chr 10
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.752C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.452C>T
  hgvsp: ENSP00000358625.1:p.Ser151Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.560C>T
  hgvsp: ENSP00000239007.7:p.Ser187Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.761C>T
  hgvsp: ENSP00000331152.5:p.Ser254Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.530C>T
  hgvsp: ENSP00000376842.1:p.Ser177Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.422C>T
  hgvsp: ENSP00000354606.4:p.Ser141Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1109C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.584C>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser254Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

10-112044630-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044630
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044630
    reference: chr 10
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.764T>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.773T>G
  hgvsp: ENSP00000331152.5:p.Val258Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1121T>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.542T>G
  hgvsp: ENSP00000376842.1:p.Val181Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.572T>G
  hgvsp: ENSP00000239007.7:p.Val191Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.434T>G
  hgvsp: ENSP00000354606.4:p.Val145Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.464T>G
  hgvsp: ENSP00000358625.1:p.Val155Gly
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.596T>G
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val258Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD

10-112044638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044638
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044638
    reference: chr 10
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.472A>G
  hgvsp: ENSP00000358625.1:p.Ile158Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.442A>G
  hgvsp: ENSP00000354606.4:p.Ile148Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.580A>G
  hgvsp: ENSP00000239007.7:p.Ile194Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.550A>G
  hgvsp: ENSP00000376842.1:p.Ile184Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.781A>G
  hgvsp: ENSP00000331152.5:p.Ile261Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1129A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000460667
  gene symbol: MXI1
  hgvsc: ENST00000460667.1:n.772A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.604A>G
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile261Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

10-112044649-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044649
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044649
    reference: chr 10
allele count: 24
allele frequency: 1.977782905363088e-4
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.615C>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.483C>G
  hgvsp: ENST00000369612.1:c.483C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.453C>G
  hgvsp: ENST00000361248.4:c.453C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.792C>G
  hgvsp: ENST00000332674.5:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1140C>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.561C>G
  hgvsp: ENST00000393134.1:c.561C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.591C>G
  hgvsp: ENST00000239007.7:c.591C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr264Thr
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

10-112044661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044661
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044661
    reference: chr 10
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1152C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.495C>T
  hgvsp: ENST00000369612.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.465C>T
  hgvsp: ENST00000361248.4:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.573C>T
  hgvsp: ENST00000393134.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.804C>T
  hgvsp: ENST00000332674.5:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.603C>T
  hgvsp: ENST00000239007.7:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.627C>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3619
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp268Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

10-112044662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044662
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044662
    reference: chr 10
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1153A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.604A>G
  hgvsp: ENSP00000239007.7:p.Ile202Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.466A>G
  hgvsp: ENSP00000354606.4:p.Ile156Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.574A>G
  hgvsp: ENSP00000376842.1:p.Ile192Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.805A>G
  hgvsp: ENSP00000331152.5:p.Ile269Val
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.628A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.496A>G
  hgvsp: ENSP00000358625.1:p.Ile166Val
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile269Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

10-112044663-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044663
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044663
    reference: chr 10
allele count: 80
allele frequency: 6.592609684543627e-4
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.575T>C
  hgvsp: ENSP00000376842.1:p.Ile192Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1154T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.629T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.497T>C
  hgvsp: ENSP00000358625.1:p.Ile166Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.605T>C
  hgvsp: ENSP00000239007.7:p.Ile202Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.467T>C
  hgvsp: ENSP00000354606.4:p.Ile156Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.806T>C
  hgvsp: ENSP00000331152.5:p.Ile269Thr
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 9.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile269Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/10-112044684-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044684
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044684
    reference: chr 10
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.827C>A
  hgvsp: ENSP00000331152.5:p.Pro276Gln
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1175C>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.518C>A
  hgvsp: ENSP00000358625.1:p.Pro173Gln
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.596C>A
  hgvsp: ENSP00000376842.1:p.Pro199Gln
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.626C>A
  hgvsp: ENSP00000239007.7:p.Pro209Gln
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.650C>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.488C>A
  hgvsp: ENSP00000354606.4:p.Pro163Gln
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro276Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

10-112044685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044685
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044685
    reference: chr 10
allele count: 4
allele frequency: 3.296467834715103e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1176G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.519G>A
  hgvsp: ENST00000369612.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.597G>A
  hgvsp: ENST00000393134.1:c.597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.489G>A
  hgvsp: ENST00000361248.4:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.651G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.627G>A
  hgvsp: ENST00000239007.7:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.828G>A
  hgvsp: ENST00000332674.5:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro276Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

10-112044690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044690
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044690
    reference: chr 10
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1181T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.602T>C
  hgvsp: ENSP00000376842.1:p.Ile201Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.833T>C
  hgvsp: ENSP00000331152.5:p.Ile278Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.524T>C
  hgvsp: ENSP00000358625.1:p.Ile175Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.494T>C
  hgvsp: ENSP00000354606.4:p.Ile165Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.632T>C
  hgvsp: ENSP00000239007.7:p.Ile211Thr
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.656T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9530
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile278Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

10-112044692-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044692
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044692
    reference: chr 10
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.835G>T
  hgvsp: ENSP00000331152.5:p.Gly279Trp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.496G>T
  hgvsp: ENSP00000354606.4:p.Gly166Trp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.526G>T
  hgvsp: ENSP00000358625.1:p.Gly176Trp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.658G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.604G>T
  hgvsp: ENSP00000376842.1:p.Gly202Trp
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1183G>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.634G>T
  hgvsp: ENSP00000239007.7:p.Gly212Trp
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly279Trp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

10-112044711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044711
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044711
    reference: chr 10
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.515C>T
  hgvsp: ENSP00000354606.4:p.Ser172Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.677C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.653C>T
  hgvsp: ENSP00000239007.7:p.Ser218Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1202C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.854C>T
  hgvsp: ENSP00000331152.5:p.Ser285Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.545C>T
  hgvsp: ENSP00000358625.1:p.Ser182Phe
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.623C>T
  hgvsp: ENSP00000376842.1:p.Ser208Phe
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser285Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-112044718-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044718
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044718
    reference: chr 10
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.660C>A
  hgvsp: ENST00000239007.7:c.660C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.522C>A
  hgvsp: ENST00000361248.4:c.522C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.630C>A
  hgvsp: ENST00000393134.1:c.630C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.861C>A
  hgvsp: ENST00000332674.5:c.861C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.552C>A
  hgvsp: ENST00000369612.1:c.552C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1209C>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.684C>A
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala287Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

10-112044720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044720
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044720
    reference: chr 10
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.632G>A
  hgvsp: ENSP00000376842.1:p.Ser211Asn
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.554G>A
  hgvsp: ENSP00000358625.1:p.Ser185Asn
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.863G>A
  hgvsp: ENSP00000331152.5:p.Ser288Asn
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.524G>A
  hgvsp: ENSP00000354606.4:p.Ser175Asn
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.662G>A
  hgvsp: ENSP00000239007.7:p.Ser221Asn
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1211G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.686G>A
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9421
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser288Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

10-112044732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044732
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044732
    reference: chr 10
allele count: 2
allele frequency: 1.666250104140632e-5
allele num: 120030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.536C>T
  hgvsp: ENSP00000354606.4:p.Ser179Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.875C>T
  hgvsp: ENSP00000331152.5:p.Ser292Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.566C>T
  hgvsp: ENSP00000358625.1:p.Ser189Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.698C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1223C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.674C>T
  hgvsp: ENSP00000239007.7:p.Ser225Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.644C>T
  hgvsp: ENSP00000376842.1:p.Ser215Leu
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser292Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

10-112044734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044734
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044734
    reference: chr 10
allele count: 1
allele frequency: 8.331389342486753e-6
allele num: 120028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1225T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.646T>C
  hgvsp: ENSP00000376842.1:p.Phe216Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.568T>C
  hgvsp: ENSP00000358625.1:p.Phe190Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.538T>C
  hgvsp: ENSP00000354606.4:p.Phe180Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.877T>C
  hgvsp: ENSP00000331152.5:p.Phe293Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.676T>C
  hgvsp: ENSP00000239007.7:p.Phe226Leu
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.700T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe293Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-112044752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044752
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044752
    reference: chr 10
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*7G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1243G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.718G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*7G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*7G>A
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

10-112044759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044759
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044759
    reference: chr 10
allele count: 7
allele frequency: 5.938242280285036e-5
allele num: 117880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*14A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*14A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1250A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*14A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.725A>G
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3579
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

10-112044768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044768
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044768
    reference: chr 10
allele count: 3
allele frequency: 2.564628641772671e-5
allele num: 116976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*23C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*23C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*23C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1259C>T
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.734C>T
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-112044768-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044768
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044767
    reference: chr 10
allele count: 1
allele frequency: 8.548762139242238e-6
allele num: 116976
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*24delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.735delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*24delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*24delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*24delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*24delA
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1260delA
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10921
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: CA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

10-112044785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044785
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044785
    reference: chr 10
allele count: 10
allele frequency: 8.677994341947689e-5
allele num: 115234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.751T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*40T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*40T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1276T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*40T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*40T>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*40T>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15994
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-112044791-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044791
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044791
    reference: chr 10
allele count: 1
allele frequency: 8.791517943488123e-6
allele num: 113746
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*46A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*46A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1282A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*46A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*46A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*46A>C
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.757A>C
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5426
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

10-112044792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044792
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044792
    reference: chr 10
allele count: 5
allele frequency: 4.395140732406251e-5
allele num: 113762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.758A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*47A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1283A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*47A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*47A>G
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4884
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

10-112044796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112044796
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112044796
    reference: chr 10
allele count: 1
allele frequency: 8.863676653075696e-6
allele num: 112820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000331152
  ensembl transcript: ENST00000332674
  gene symbol: MXI1
  hgvsc: ENST00000332674.5:c.*51A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000239007
  ensembl transcript: ENST00000239007
  gene symbol: MXI1
  hgvsc: ENST00000239007.7:c.*51A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000484030
  gene symbol: MXI1
  hgvsc: ENST00000484030.1:n.762A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119950
  ensembl transcript: ENST00000485566
  gene symbol: MXI1
  hgvsc: ENST00000485566.1:n.1287A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000376842
  ensembl transcript: ENST00000393134
  gene symbol: MXI1
  hgvsc: ENST00000393134.1:c.*51A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000358625
  ensembl transcript: ENST00000369612
  gene symbol: MXI1
  hgvsc: ENST00000369612.1:c.*51A>G
  variant of: http://identifiers.org/hgnc/7534
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119950
  ensembl protein: ENSP00000354606
  ensembl transcript: ENST00000361248
  gene symbol: MXI1
  hgvsc: ENST00000361248.4:c.*51A>G
  variant of: http://identifiers.org/hgnc/7534
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

10-112053877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053877
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053877
    reference: chr 10
allele count: 1
allele frequency: 8.802816901408451e-6
allele num: 113600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.*31G>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 6725
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6596
  num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

10-112053879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053879
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053879
    reference: chr 10
allele count: 1
allele frequency: 8.790590551873274e-6
allele num: 113758
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.*29C>T
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
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genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11464
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

10-112053892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053892
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053892
    reference: chr 10
allele count: 2
allele frequency: 1.739947453586902e-5
allele num: 114946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.*16G>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10274
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-112053893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053893
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053893
    reference: chr 10
allele count: 1
allele frequency: 8.689909277347145e-6
allele num: 115076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.*15G>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.533507130808158e-5
  allele num: 65210
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

10-112053903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053903
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053903
    reference: chr 10
allele count: 9
allele frequency: 7.755946225439503e-5
allele num: 116040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.*5A>G
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.*5A>G
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 11943
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10302
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

10-112053911-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053911
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053911
    reference: chr 10
allele count: 1
allele frequency: 8.542773667754446e-6
allele num: 117058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.714A>G
  hgvsp: ENST00000369592.1:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.714A>G
  hgvsp: ENST00000369603.5:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln238Gln
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10322
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-112053950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053950
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053950
    reference: chr 10
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.675A>G
  hgvsp: ENST00000369603.5:c.675A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.675A>G
  hgvsp: ENST00000369592.1:c.675A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31
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  variant carriers: 0
hgvs: p.Gln225Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8652
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-112053971-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112053971
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112053971
    reference: chr 10
allele count: 3
allele frequency: 2.480117722921248e-5
allele num: 120962
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.654T>C
  hgvsp: ENST00000369603.5:c.654T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.654T>C
  hgvsp: ENST00000369592.1:c.654T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6713
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11192
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp218Asp
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11526
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

10-112054043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054043
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054043
    reference: chr 10
allele count: 1
allele frequency: 8.411560849231184e-6
allele num: 118884
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.582A>G
  hgvsp: ENST00000369603.5:c.582A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.582A>G
  hgvsp: ENST00000369592.1:c.582A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4139
  bin: 7.75e1
  variant carriers: 0
hgvs: c.582A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

10-112054052-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054052
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054052
    reference: chr 10
allele count: 2
allele frequency: 1.690074194257128e-5
allele num: 118338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-7C>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-7C>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6701
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.75e1
  variant carriers: 0
hgvs: c.580-7C>A
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11464
  num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

10-112054053-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054053
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054053
    reference: chr 10
allele count: 1
allele frequency: 8.45394291897741e-6
allele num: 118288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-8T>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-8T>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6699
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1134
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 9.25e1
  variant carriers: 0
hgvs: c.580-8T>C
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10314
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

10-112054061-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054061
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054061
    reference: chr 10
allele count: 1
allele frequency: 8.487811502682149e-6
allele num: 117816
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-16G>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-16G>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10862
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 876
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

10-112054061-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054061
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054059
    reference: chr 10
allele count: 2
allele frequency: 1.69756230053643e-5
allele num: 117816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-18_580-17delCT
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-18_580-17delCT
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6697
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.043213633597079e-5
  allele num: 65720
  num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: CAG
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

10-112054070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054070
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054070
    reference: chr 10
allele count: 1
allele frequency: 8.532714427113554e-6
allele num: 117196
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-25A>G
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-25A>G
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4077
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23756
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65482
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

10-112054078-T-TAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054078
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054080
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 115762
alternate allele: TAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-34_580-33insGT
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-34_580-33insGT
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 211
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 455
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10228
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1146
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9970
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

10-112054082-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054082
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054082
    reference: chr 10
allele count: 5
allele frequency: 4.355476576246973e-5
allele num: 114798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-37C>T
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-37C>T
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5521
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1722
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 4.633920296570899e-5
  allele num: 64740
  num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

10-112054086-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054086
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054085
    reference: chr 10
allele count: 1
allele frequency: 8.791672527781685e-6
allele num: 113744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-42delT
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-42delT
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 12446
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: GA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

10-112054093-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054093
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054094
    reference: chr 10
allele count: 1
allele frequency: 8.938946992044337e-6
allele num: 111870
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-49dupT
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-49dupT
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8368
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-112054093-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054093
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054092
    reference: chr 10
allele count: 3
allele frequency: 2.681684097613301e-5
allele num: 111870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-49delT
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-49delT
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7369
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11796
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 6682
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  variant carriers: 1
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 822
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: TA
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

10-112054094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054094
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054094
    reference: chr 10
allele count: 58
allele frequency: 5.247634040859165e-4
allele num: 110526
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-49T>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-49T>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3955
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8290
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

10-112054094-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054094
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054094
    reference: chr 10
allele count: 2
allele frequency: 1.809528979606608e-5
allele num: 110526
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.580-49T>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.580-49T>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3753
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.178033432911714e-5
  allele num: 62932
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

10-112054944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054944
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054944
    reference: chr 10
allele count: 1
allele frequency: 8.369041242635244e-6
allele num: 119488
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+42A>G
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+42A>G
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 742
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 677
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65790
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

10-112054946-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054946
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054946
    reference: chr 10
allele count: 2
allele frequency: 1.673668178546921e-5
allele num: 119498
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+40C>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+40C>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8484
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-112054947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054947
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054947
    reference: chr 10
allele count: 2
allele frequency: 1.673416111650323e-5
allele num: 119516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+39G>A
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+39G>A
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 213
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9902
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

10-112054955-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054955
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054955
    reference: chr 10
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+31T>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+31T>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11410
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

10-112054971-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054971
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054971
    reference: chr 10
allele count: 1
allele frequency: 8.318360284820657e-6
allele num: 120216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+15T>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+15T>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 900
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-112054972-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054972
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054972
    reference: chr 10
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+14T>C
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+14T>C
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10066
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-112054973-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 112054973
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 112054973
    reference: chr 10
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358616
  ensembl transcript: ENST00000369603
  gene symbol: SMNDC1
  hgvsc: ENST00000369603.5:c.579+13T>G
  variant of: http://identifiers.org/hgnc/16900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119953
  ensembl protein: ENSP00000358605
  ensembl transcript: ENST00000369592
  gene symbol: SMNDC1
  hgvsc: ENST00000369592.1:c.579+13T>G
  variant of: http://identifiers.org/hgnc/16900
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 1928

GenotypeQuality
all individuals: 2549
bin: 6.25e1
variant carriers: 1764

GenotypeQuality
all individuals: 1459
bin: 2.25e1
variant carriers: 1269

GenotypeQuality
all individuals: 1929
bin: 4.25e1
variant carriers: 1884

GenotypeQuality
all individuals: 1597
bin: 7.25e1
variant carriers: 1529

GenotypeQuality
all individuals: 1526
bin: 2.75e1
variant carriers: 1436

GenotypeQuality
all individuals: 1822
bin: 3.25e1
variant carriers: 1670

GenotypeQuality
all individuals: 1245
bin: 8.75e1
variant carriers: 1204

GenotypeQuality
all individuals: 1168
bin: 9.25e1
variant carriers: 1130

GenotypeQuality
all individuals: 1795
bin: 3.75e1
variant carriers: 1706

GenotypeQuality
all individuals: 1631
bin: 7.75e1
variant carriers: 1516

GenotypeQuality
all individuals: 1857
bin: 5.25e1
variant carriers: 1808

Other
type: Population
allele count: 470
allele frequency: 5.676328502415459e-1
allele num: 828
num of homozygotes: 73

European (Non-Finnish)
type: Population
allele count: 34052
allele frequency: 5.513065440533627e-1
allele num: 61766
num of homozygotes: 4582

East Asian
type: Population
allele count: 4831
allele frequency: 6.288726894038011e-1
allele num: 7682
num of homozygotes: 991

Latino
type: Population
allele count: 5993
allele frequency: 5.613525665043088e-1
allele num: 10676
num of homozygotes: 719

African
type: Population
allele count: 5037
allele frequency: 5.213206375491617e-1
allele num: 9662
num of homozygotes: 670

European (Finnish)
type: Population
allele count: 3651
allele frequency: 6.056735235567352e-1
allele num: 6028
num of homozygotes: 731

South Asian
type: Population
allele count: 9005
allele frequency: 6.161056376573618e-1
allele num: 14616
num of homozygotes: 1789

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.601e-1

MQ
type: SiteQuality
SIO_000300: 5.56e1

QD
type: SiteQuality
SIO_000300: 1.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

DP
type: SiteQuality
SIO_000300: 1.67361e6

GenotypeQuality
all individuals: 831
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1795
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1371
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 31319
bin: 9.75e1
variant carriers: 45

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2549
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1857
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1074
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1929
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1526
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 8.58077259333614e-4
allele num: 61766
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.06996481059822e-4
allele num: 9662
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.207729468599034e-3
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.683402023229674e-4
allele num: 10676
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.420908593322386e-4
allele num: 14616
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

QD
type: SiteQuality
SIO_000300: 1.803e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 1.67361e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.601e-1

MQ
type: SiteQuality
SIO_000300: 5.56e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

GenotypeQuality
all individuals: 5412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7627
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12233
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e0

MQ
type: SiteQuality
SIO_000300: 5.474e1

VQSLOD
type: SiteQuality
SIO_000300: -4.019e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

DP
type: SiteQuality
SIO_000300: 2.126292e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 2313
bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2034
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 8931
bin: 2.5e0
variant carriers: 147

GenotypeQuality
all individuals: 2238
bin: 4.25e1
variant carriers: 43

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1646
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2903
bin: 1.25e1
variant carriers: 139

GenotypeQuality
all individuals: 2920
bin: 1.75e1
variant carriers: 102

GenotypeQuality
all individuals: 9734
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2045
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3111
bin: 7.5e0
variant carriers: 136

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.721499617444529e-3
allele num: 5228
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 2.30361667818475e-3
allele num: 8682
num of homozygotes: 0

African
type: Population
allele count: 63
allele frequency: 9.119861030689055e-3
allele num: 6908
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 6.268364348677767e-3
allele num: 10210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 274
allele frequency: 5.832517348546128e-3
allele num: 46978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.076923076923077e-3
allele num: 650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.674e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.097812e6

QD
type: SiteQuality
SIO_000300: 9.0e-1

GenotypeQuality
all individuals: 2238
bin: 4.25e1
variant carriers: 400

GenotypeQuality
all individuals: 1888
bin: 5.75e1
variant carriers: 214

GenotypeQuality
all individuals: 2903
bin: 1.25e1
variant carriers: 687

GenotypeQuality
all individuals: 2404
bin: 3.75e1
variant carriers: 377

GenotypeQuality
all individuals: 2210
bin: 6.75e1
variant carriers: 158

GenotypeQuality
all individuals: 1737
bin: 7.75e1
variant carriers: 90

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 120

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 57

GenotypeQuality
all individuals: 2045
bin: 8.25e1
variant carriers: 93

GenotypeQuality
all individuals: 1646
bin: 9.25e1
variant carriers: 59

GenotypeQuality
all individuals: 2313
bin: 6.25e1
variant carriers: 171

GenotypeQuality
all individuals: 9734
bin: 9.75e1
variant carriers: 529

European (Non-Finnish)
type: Population
allele count: 2028
allele frequency: 4.316914300310784e-2
allele num: 46978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 87
allele frequency: 1.664116296863045e-2
allele num: 5228
num of homozygotes: 0

Latino
type: Population
allele count: 587
allele frequency: 6.761114950472241e-2
allele num: 8682
num of homozygotes: 0

East Asian
type: Population
allele count: 331
allele frequency: 5.147744945567652e-2
allele num: 6430
num of homozygotes: 0

African
type: Population
allele count: 266
allele frequency: 3.850607990735379e-2
allele num: 6908
num of homozygotes: 0

Other
type: Population
allele count: 37
allele frequency: 5.692307692307692e-2
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 1104
allele frequency: 1.081292850146915e-1
allele num: 10210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.284e0

MQ
type: SiteQuality
SIO_000300: 5.674e1

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.18e-2

DP
type: SiteQuality
SIO_000300: 2.097812e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 9.0e-1

GenotypeQuality
all individuals: 3111
bin: 7.5e0
variant carriers: 255

GenotypeQuality
all individuals: 2404
bin: 3.75e1
variant carriers: 121

GenotypeQuality
all individuals: 1737
bin: 7.75e1
variant carriers: 48

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 30

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 182

GenotypeQuality
all individuals: 2189
bin: 4.75e1
variant carriers: 98

GenotypeQuality
all individuals: 2313
bin: 6.25e1
variant carriers: 63

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 43

GenotypeQuality
all individuals: 2045
bin: 8.25e1
variant carriers: 31

GenotypeQuality
all individuals: 9734
bin: 9.75e1
variant carriers: 190

GenotypeQuality
all individuals: 2663
bin: 3.25e1
variant carriers: 131

GenotypeQuality
all individuals: 1888
bin: 5.75e1
variant carriers: 68

Other
type: Population
allele count: 15
allele frequency: 2.307692307692308e-2
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 938
allele frequency: 1.996679296692069e-2
allele num: 46978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 7.268553940321346e-3
allele num: 5228
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.555209953343701e-4
allele num: 6430
num of homozygotes: 0

African
type: Population
allele count: 241
allele frequency: 3.488708743485813e-2
allele num: 6908
num of homozygotes: 0

Latino
type: Population
allele count: 61
allele frequency: 7.026030868463488e-3
allele num: 8682
num of homozygotes: 0

South Asian
type: Population
allele count: 123
allele frequency: 1.204701273261508e-2
allele num: 10210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.674e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.18e-2

FS
type: SiteQuality
SIO_000300: 1.284e0

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

DP
type: SiteQuality
SIO_000300: 2.097812e6

QD
type: SiteQuality
SIO_000300: 9.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeQuality
all individuals: 8931
bin: 2.5e0
variant carriers: 42

GenotypeQuality
all individuals: 2703
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 9734
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2034
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2903
bin: 1.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2045
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1968
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 25

GenotypeQuality
all individuals: 2404
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2920
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1868
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1888
bin: 5.75e1
variant carriers: 11

European (Non-Finnish)
type: Population
allele count: 96
allele frequency: 2.043509727957768e-3
allele num: 46978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 5.738332058148432e-4
allele num: 5228
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 5.06658946149392e-3
allele num: 6908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.455425017277125e-4
allele num: 8682
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.076923076923077e-3
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 9.794319294809011e-4
allele num: 10210
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 9.0e-1

DP
type: SiteQuality
SIO_000300: 2.097812e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.674e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 1.284e0

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.0e-1

MQ
type: SiteQuality
SIO_000300: 5.674e1

FS
type: SiteQuality
SIO_000300: 1.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 2.097812e6

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 264

GenotypeQuality
all individuals: 3046
bin: 2.25e1
variant carriers: 1105

GenotypeQuality
all individuals: 2559
bin: 3.25e1
variant carriers: 1015

GenotypeQuality
all individuals: 3578
bin: 9.75e1
variant carriers: 1359

GenotypeQuality
all individuals: 18309
bin: 2.5e0
variant carriers: 1023

GenotypeQuality
all individuals: 1823
bin: 4.75e1
variant carriers: 714

GenotypeQuality
all individuals: 3170
bin: 7.5e0
variant carriers: 1223

GenotypeQuality
all individuals: 958
bin: 8.25e1
variant carriers: 292

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 375

GenotypeQuality
all individuals: 2224
bin: 3.75e1
variant carriers: 903

GenotypeQuality
all individuals: 2111
bin: 4.25e1
variant carriers: 862

GenotypeQuality
all individuals: 1020
bin: 7.75e1
variant carriers: 319

European (Non-Finnish)
type: Population
allele count: 5374
allele frequency: 1.663674075908612e-1
allele num: 32302
num of homozygotes: 0

East Asian
type: Population
allele count: 1024
allele frequency: 2.509803921568627e-1
allele num: 4080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 293
allele frequency: 8.342824601366743e-2
allele num: 3512
num of homozygotes: 0

Other
type: Population
allele count: 74
allele frequency: 1.745283018867924e-1
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 1970
allele frequency: 2.985753258563201e-1
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1296
allele frequency: 2.12807881773399e-1
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 561
allele frequency: 1.284340659340659e-1
allele num: 4368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.123e0

DP
type: SiteQuality
SIO_000300: 1.948373e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.576e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

MQ
type: SiteQuality
SIO_000300: 5.655e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

QD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 1607
bin: 7.5e0
variant carriers: 124

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1453
bin: 2.75e1
variant carriers: 87

GenotypeQuality
all individuals: 639
bin: 5.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1142
bin: 3.75e1
variant carriers: 53

GenotypeQuality
all individuals: 1644
bin: 6.25e1
variant carriers: 28

GenotypeQuality
all individuals: 433
bin: 7.75e1
variant carriers: 16

GenotypeQuality
all individuals: 984
bin: 4.25e1
variant carriers: 63

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 908
bin: 4.75e1
variant carriers: 54

European (Finnish)
type: Population
allele count: 26
allele frequency: 1.155555555555556e-2
allele num: 2250
num of homozygotes: 0

South Asian
type: Population
allele count: 81
allele frequency: 2.79117849758787e-2
allele num: 2902
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 1.830218068535825e-2
allele num: 2568
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.376146788990826e-2
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 72
allele frequency: 2.861685214626391e-2
allele num: 2516
num of homozygotes: 0

East Asian
type: Population
allele count: 82
allele frequency: 3.946102021174206e-2
allele num: 2078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 322
allele frequency: 2.000994282873477e-2
allele num: 16092
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

MQ
type: SiteQuality
SIO_000300: 5.661e1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

FS
type: SiteQuality
SIO_000300: 1.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

DP
type: SiteQuality
SIO_000300: 2.251779e6

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
all individuals: 8697
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 2539
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 15798
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1127
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 2352
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 4.25e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 2.494387627837366e-4
allele num: 8018
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.977724741447892e-4
allele num: 12570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.286846819377215e-4
allele num: 52474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.226500322650032e-4
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.04508808599582e-3
allele num: 6698
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 2.523e0

DP
type: SiteQuality
SIO_000300: 2.00059e6

QD
type: SiteQuality
SIO_000300: 3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.847e-1

MQ
type: SiteQuality
SIO_000300: 5.761e1

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

GenotypeQuality
all individuals: 1318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.247193813918683e-4
allele num: 8018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 2.523e0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.847e-1

DP
type: SiteQuality
SIO_000300: 2.00059e6

QD
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.761e1

GenotypeQuality
all individuals: 28186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.56475429678044e-5
allele num: 66096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.096e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.80669e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.575e1

MQ
type: SiteQuality
SIO_000300: 5.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

VQSLOD
type: SiteQuality
SIO_000300: -8.754999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

GenotypeQuality
all individuals: 8787
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4035
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.676e1

DP
type: SiteQuality
SIO_000300: 1.805643e6

FS
type: SiteQuality
SIO_000300: 2.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.713e0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2768
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544544668231805e-5
allele num: 64744
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.376990729736154e-4
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

DP
type: SiteQuality
SIO_000300: 1.816314e6

QD
type: SiteQuality
SIO_000300: 8.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

MQ
type: SiteQuality
SIO_000300: 5.555e1

VQSLOD
type: SiteQuality
SIO_000300: -2.428e0

FS
type: SiteQuality
SIO_000300: 1.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.258e0

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2874
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33567
bin: 6.25e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9035
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2997
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 966
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 23
allele frequency: 2.225232198142415e-3
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 105
allele frequency: 6.466313585416923e-3
allele num: 16238
num of homozygotes: 2

East Asian
type: Population
allele count: 431
allele frequency: 5.022139361454207e-2
allele num: 8582
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.582650894752805e-4
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.424778761061947e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 3.212363257509984e-3
allele num: 11518
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 299
allele frequency: 4.506541267257491e-3
allele num: 66348
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 2.548e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.91e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 1.825355e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.324e0

MQ
type: SiteQuality
SIO_000300: 5.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9261
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 741
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variant carriers: 0

GenotypeQuality
all individuals: 3053
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variant carriers: 0

GenotypeQuality
all individuals: 35503
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variant carriers: 0

GenotypeQuality
all individuals: 1837
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variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 381
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140997297961189e-5
allele num: 16284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.638e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

DP
type: SiteQuality
SIO_000300: 1.819986e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeQuality
all individuals: 883
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
all individuals: 173
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variant carriers: 0

GenotypeQuality
all individuals: 767
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3061
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variant carriers: 0

GenotypeQuality
all individuals: 35654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9312
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226993865030675e-4
allele num: 16300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.406e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.526e0

FS
type: SiteQuality
SIO_000300: 3.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.775e1

DP
type: SiteQuality
SIO_000300: 1.820713e6

QD
type: SiteQuality
SIO_000300: 2.226e1

GenotypeQuality
all individuals: 1826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007337904486948e-5
allele num: 66504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.413e-1

FS
type: SiteQuality
SIO_000300: 2.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.778e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.774e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

DP
type: SiteQuality
SIO_000300: 1.827825e6

GenotypeQuality
all individuals: 342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.832839e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.845e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
all individuals: 760
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9500
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.874e1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.836972e6

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.084e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3063
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.519e0

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

DP
type: SiteQuality
SIO_000300: 1.837307e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3620
bin: 9.75e1
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GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.783e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.73e0

QD
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SIO_000300: 9.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

DP
type: SiteQuality
SIO_000300: 1.839174e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.773e0

DP
type: SiteQuality
SIO_000300: 1.842202e6

MQ
type: SiteQuality
SIO_000300: 5.708e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.157e1

VQSLOD
type: SiteQuality
SIO_000300: -1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.613e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 8.154999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

DP
type: SiteQuality
SIO_000300: 1.842874e6

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 22

GenotypeQuality
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GenotypeQuality
all individuals: 16
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.454016721192294e-3
allele num: 16506
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.303e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.009e0

QD
type: SiteQuality
SIO_000300: 1.094e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 1.843841e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.77e-2

MQ
type: SiteQuality
SIO_000300: 5.757e1

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.601e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 1.843653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 3.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.843561e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

QD
type: SiteQuality
SIO_000300: 1.549e1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.011e0

VQSLOD
type: SiteQuality
SIO_000300: -2.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.637e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 69
allele frequency: 1.03448275862069e-3
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.322268326417704e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.026634382566586e-4
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

QD
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SIO_000300: 1.388e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.846216e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.333e0

MQ
type: SiteQuality
SIO_000300: 5.679e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

QD
type: SiteQuality
SIO_000300: 9.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.118e0

DP
type: SiteQuality
SIO_000300: 1.84281e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.997181324777355e-5
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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East Asian
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African
type: Population
allele count: 0
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South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.842844e6

ReadPosRankSum
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SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.876e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10402
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.685e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
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African
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allele frequency: 0.0e0
allele num: 10402
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East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.456e0

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.002e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.823e1

MQRankSum
type: SiteQuality
SIO_000300: -1.446e0

VQSLOD
type: SiteQuality
SIO_000300: -2.726e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16172
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.357e0

FS
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 1.833416e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.764e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.222e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.832547e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 2.766e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.161e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.919e0

DP
type: SiteQuality
SIO_000300: 1.815872e6

FS
type: SiteQuality
SIO_000300: 1.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
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South Asian
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allele count: 1
allele frequency: 6.397134083930399e-5
allele num: 15632
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.815098e6

QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 868
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South Asian
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allele frequency: 6.724045185583647e-5
allele num: 14872
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Latino
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65944
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European (Finnish)
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African
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East Asian
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VQSLOD
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10304
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65678
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East Asian
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Other
type: Population
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South Asian
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BaseQRankSum
type: SiteQuality
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.881e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
type: Population
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allele frequency: 1.529005229197884e-5
allele num: 65402
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Other
type: Population
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Latino
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allele frequency: 1.758087201125176e-4
allele num: 11376
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South Asian
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African
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

FS
type: SiteQuality
SIO_000300: 2.033e0

DP
type: SiteQuality
SIO_000300: 1.70634e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.525e0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29707
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529005229197884e-5
allele num: 65402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.248e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 2.033e0

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.70634e6

GenotypeQuality
all individuals: 4415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3565
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 19313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6847
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.542828931128116e-4
allele num: 64816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 1.475e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.773e0

DP
type: SiteQuality
SIO_000300: 1.572413e6

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.378e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
all individuals: 5461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554968123153475e-5
allele num: 64310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.688e1

VQSLOD
type: SiteQuality
SIO_000300: -1.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.842e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 1.516553e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
all individuals: 685
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5451
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554871412134217e-5
allele num: 64314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.253090435914119e-4
allele num: 12296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 4.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.515956e6

QD
type: SiteQuality
SIO_000300: 1.177e1

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.791e1

GenotypeQuality
all individuals: 3128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5880
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4914
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.365400702693659e-5
allele num: 11954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.63e0

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

DP
type: SiteQuality
SIO_000300: 1.504342e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.134e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64784
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.062589e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.883e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 7.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.621e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542400592281827e-5
allele num: 64834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.213e0

FS
type: SiteQuality
SIO_000300: 7.104e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

DP
type: SiteQuality
SIO_000300: 2.064526e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069179301454791e-5
allele num: 65164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11958
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 2.076509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.085e0

FS
type: SiteQuality
SIO_000300: 1.467e0

QD
type: SiteQuality
SIO_000300: 1.057e1

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 2.077882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.835e0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.069780236574258e-4
allele num: 65434
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.869058860560277e-5
allele num: 12708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.085683e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.455e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522718966987453e-5
allele num: 65672
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

DP
type: SiteQuality
SIO_000300: 2.095262e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.237e1

FS
type: SiteQuality
SIO_000300: 6.267e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.993e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

QD
type: SiteQuality
SIO_000300: 1.444e1

MQRankSum
type: SiteQuality
SIO_000300: -1.519e0

VQSLOD
type: SiteQuality
SIO_000300: -5.941e-1

DP
type: SiteQuality
SIO_000300: 2.133832e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.840716652349982e-4
allele num: 16298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.844e0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 2.137773e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513821187441339e-5
allele num: 66058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
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MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.772e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 2.099338e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14544
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.315886984715146e-4
allele num: 8636
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65904
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 2.072e0

DP
type: SiteQuality
SIO_000300: 2.088001e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.542e0

QD
type: SiteQuality
SIO_000300: 1.024e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 2.086482e6

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
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MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
SIO_000300: 2.077235e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.1163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.337e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.024e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.1163e1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

MQ
type: SiteQuality
SIO_000300: 6.024e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.077235e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.07e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.019e0

VQSLOD
type: SiteQuality
SIO_000300: -1.571e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 2.060613e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 13362
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MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.279e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.010807e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759633996128805e-4
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12930
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 1.957095e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.889e0

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552602161222208e-5
allele num: 64408
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.847e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.564e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.900056e6

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.047998323202683e-4
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11776
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

MQ
type: SiteQuality
SIO_000300: 6.077e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 1.825425e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.547554347826087e-4
allele num: 11776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

DP
type: SiteQuality
SIO_000300: 1.825425e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.077e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

QD
type: SiteQuality
SIO_000300: 1.136e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 57
allele frequency: 5.002632964718273e-3
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 1.805867e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
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DP
type: SiteQuality
SIO_000300: 1.805867e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
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FS
type: SiteQuality
SIO_000300: 6.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 1.274e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.95e0

DP
type: SiteQuality
SIO_000300: 1.676757e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03960606705371e-5
allele num: 65798
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -3.549e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

QD
type: SiteQuality
SIO_000300: 1.604e1

DP
type: SiteQuality
SIO_000300: 1.680723e6

FS
type: SiteQuality
SIO_000300: 2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.039698461912578e-5
allele num: 65796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.102e0

QD
type: SiteQuality
SIO_000300: 1.569e1

FS
type: SiteQuality
SIO_000300: 2.344e0

VQSLOD
type: SiteQuality
SIO_000300: -9.679e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 1.682548e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.692157e6

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 2.218e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66206
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.948269001193792e-5
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 1.595e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

QD
type: SiteQuality
SIO_000300: 1.592e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.706204e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.773e0

FS
type: SiteQuality
SIO_000300: 1.7038e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.602e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

DP
type: SiteQuality
SIO_000300: 1.706777e6

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1